© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7630.t1 |
| Gene name | |
| Location | scaffold_24:364500..366085 |
| Strand | + |
| Gene length (bp) | 1585 |
| Transcript length (bp) | 1530 |
| Coding sequence length (bp) | 1530 |
| Protein length (aa) | 510 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01494 | FAD_binding_3 | FAD binding domain | 8.8E-16 | 215 | 455 |
| PF08491 | SE | Squalene epoxidase | 2.1E-04 | 374 | 435 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004506 | squalene monooxygenase activity | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:0071949 | FAD binding | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0036094 | small molecule binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen | No |
| GO:0043167 | ion binding | No |
| GO:0005575 | cellular_component | No |
| GO:0004497 | monooxygenase activity | No |
| GO:0000166 | nucleotide binding | No |
| GO:0005488 | binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | No |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 39.47 | 22.94 | 55.99 |
| 5d_25C | Five days - 25 degrees Celsius | 33.90 | 19.15 | 48.64 |
| 7d_25C | Seven days - 25 degrees Celsius | 27.21 | 14.76 | 39.67 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.69 | 13.79 | 37.60 |
| 7d_15C | Seven days - 15 degrees Celsius | 33.27 | 18.63 | 47.92 |
| 7d_30C | Seven days - 30 degrees Celsius | 30.84 | 17.14 | 44.55 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.609205 | no |
| 3d_25C | 7d_25C | 0.135934 | no |
| 3d_25C | 7d_15C | 0.553273 | no |
| 3d_25C | 7d_30C | 0.344361 | no |
| 3d_25C | 10d_25C | 0.075794 | no |
| 5d_25C | 7d_25C | 0.443748 | no |
| 5d_25C | 7d_15C | 0.962434 | no |
| 5d_25C | 7d_30C | 0.774717 | no |
| 5d_25C | 10d_25C | 0.303781 | no |
| 7d_25C | 7d_15C | 0.494797 | no |
| 7d_25C | 7d_30C | 0.704981 | no |
| 7d_25C | 10d_25C | 0.882819 | no |
| 7d_15C | 7d_30C | 0.823899 | no |
| 7d_15C | 10d_25C | 0.346313 | no |
| 7d_30C | 10d_25C | 0.537252 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 7043 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7630.t1 MRPISRAVLRPYVCPTCRHGITAGRRQFASKSDSPDLYDVVCVGGGPAGLGLLAALRASPITSKLKVALIETQDL RKAKAWDLEPNQFSNRCSSLTPSTVAFLRSIGAYDKLDVSRVQEYQDMQVWDGQTGSRISFDWSMETSPFEDMRT VATMTENANLVRALLRRIADSGDENLSLFSNSTVASIENGSDLKPDGPDLSAWPIVTVKPTGPAAETEPPKRIAA RLLVGADGINSPVRTFADIPTQGWDYGRHGIVATLALAEPATAPFPASKRTAYQRFLPALGGPIALLPLPNNHAT LVWSTTPEHAAYLKSLPTPAFLAMVNAAFRLDMTDLTYMMGMQSSSSDSTPSHQDELAWRVQHTPLPAQVPPPAT GVQTGTVASFPLRFRHAAQYVSPRVALVGDAAHVIHPLAGQGLNLGQADVASLSKTIQYAVSHGMDIGDLLALER YSSERYLPNAKIGGACDLLHKMYNVPGEGPVAWARSLGLGVVDRLPFVKSFLMKNAEGY* |
| Coding | >Pro_DTO377G3_2|g7630.t1 ATGCGTCCAATCTCCAGAGCTGTCCTTCGGCCGTATGTCTGCCCAACCTGCCGGCATGGCATTACCGCCGGTCGG CGGCAATTTGCATCTAAATCGGATTCCCCCGACCTATATGACGTGGTTTGTGTTGGAGGCGGGCCGGCAGGCCTA GGGCTATTGGCCGCACTTCGAGCATCACCTATCACCTCAAAGCTCAAAGTCGCCCTCATTGAGACCCAAGATCTC CGCAAAGCCAAAGCCTGGGACCTCGAACCGAACCAGTTCTCCAACCGGTGCAGCAGCTTGACCCCCTCGACCGTG GCGTTCCTGCGTAGCATTGGCGCCTACGATAAGCTCGATGTTAGTCGCGTGCAGGAATACCAGGACATGCAGGTC TGGGACGGCCAAACCGGGTCCCGAATATCATTCGATTGGTCAATGGAGACATCCCCATTCGAGGACATGCGCACT GTAGCAACCATGACCGAGAACGCGAACCTGGTGCGCGCCCTGCTCCGCCGCATCGCCGACTCAGGTGACGAGAAC CTCTCCCTCTTCTCAAACTCGACAGTCGCCTCCATCGAGAACGGCTCAGACCTCAAACCCGACGGTCCCGACCTC TCAGCCTGGCCCATCGTCACCGTCAAGCCCACAGGCCCCGCCGCGGAAACAGAGCCACCCAAGCGCATCGCGGCC CGCCTCCTCGTCGGTGCAGACGGTATCAACAGCCCCGTCCGCACCTTCGCCGACATCCCCACCCAAGGCTGGGAC TACGGCCGCCACGGCATCGTCGCAACCCTCGCTCTCGCCGAGCCAGCCACCGCGCCCTTCCCGGCCTCCAAGCGC ACAGCCTACCAGCGCTTCCTCCCCGCTCTCGGCGGCCCCATCGCCCTCCTCCCGCTGCCAAACAACCACGCCACC CTCGTCTGGTCAACGACCCCCGAGCACGCAGCCTACCTAAAGTCCCTCCCCACCCCGGCCTTCCTCGCCATGGTC AACGCCGCCTTCCGTCTCGACATGACAGACCTCACCTACATGATGGGCATGCAATCCTCCTCCTCCGATTCCACC CCATCCCACCAAGACGAACTCGCCTGGCGCGTCCAGCACACCCCCCTCCCAGCCCAAGTCCCTCCCCCAGCAACA GGTGTGCAGACAGGAACAGTCGCTTCCTTCCCGCTGCGCTTCCGACACGCCGCGCAGTACGTCTCGCCGCGCGTT GCGCTCGTCGGCGACGCCGCACACGTCATTCACCCCCTCGCTGGTCAGGGCCTGAACCTCGGCCAGGCGGATGTT GCGTCGCTCTCCAAGACGATCCAGTATGCTGTCTCGCATGGCATGGATATCGGTGATTTGCTTGCTCTTGAGCGG TACTCGTCTGAGCGGTACTTGCCTAATGCGAAGATCGGCGGCGCTTGCGATCTCCTGCATAAGATGTATAATGTT CCTGGTGAAGGGCCGGTTGCTTGGGCGCGTAGTCTTGGACTCGGCGTCGTTGATCGCTTGCCTTTTGTTAAGTCG TTCTTGATGAAGAATGCGGAGGGATATTAG |
| Transcript | >Pro_DTO377G3_2|g7630.t1 ATGCGTCCAATCTCCAGAGCTGTCCTTCGGCCGTATGTCTGCCCAACCTGCCGGCATGGCATTACCGCCGGTCGG CGGCAATTTGCATCTAAATCGGATTCCCCCGACCTATATGACGTGGTTTGTGTTGGAGGCGGGCCGGCAGGCCTA GGGCTATTGGCCGCACTTCGAGCATCACCTATCACCTCAAAGCTCAAAGTCGCCCTCATTGAGACCCAAGATCTC CGCAAAGCCAAAGCCTGGGACCTCGAACCGAACCAGTTCTCCAACCGGTGCAGCAGCTTGACCCCCTCGACCGTG GCGTTCCTGCGTAGCATTGGCGCCTACGATAAGCTCGATGTTAGTCGCGTGCAGGAATACCAGGACATGCAGGTC TGGGACGGCCAAACCGGGTCCCGAATATCATTCGATTGGTCAATGGAGACATCCCCATTCGAGGACATGCGCACT GTAGCAACCATGACCGAGAACGCGAACCTGGTGCGCGCCCTGCTCCGCCGCATCGCCGACTCAGGTGACGAGAAC CTCTCCCTCTTCTCAAACTCGACAGTCGCCTCCATCGAGAACGGCTCAGACCTCAAACCCGACGGTCCCGACCTC TCAGCCTGGCCCATCGTCACCGTCAAGCCCACAGGCCCCGCCGCGGAAACAGAGCCACCCAAGCGCATCGCGGCC CGCCTCCTCGTCGGTGCAGACGGTATCAACAGCCCCGTCCGCACCTTCGCCGACATCCCCACCCAAGGCTGGGAC TACGGCCGCCACGGCATCGTCGCAACCCTCGCTCTCGCCGAGCCAGCCACCGCGCCCTTCCCGGCCTCCAAGCGC ACAGCCTACCAGCGCTTCCTCCCCGCTCTCGGCGGCCCCATCGCCCTCCTCCCGCTGCCAAACAACCACGCCACC CTCGTCTGGTCAACGACCCCCGAGCACGCAGCCTACCTAAAGTCCCTCCCCACCCCGGCCTTCCTCGCCATGGTC AACGCCGCCTTCCGTCTCGACATGACAGACCTCACCTACATGATGGGCATGCAATCCTCCTCCTCCGATTCCACC CCATCCCACCAAGACGAACTCGCCTGGCGCGTCCAGCACACCCCCCTCCCAGCCCAAGTCCCTCCCCCAGCAACA GGTGTGCAGACAGGAACAGTCGCTTCCTTCCCGCTGCGCTTCCGACACGCCGCGCAGTACGTCTCGCCGCGCGTT GCGCTCGTCGGCGACGCCGCACACGTCATTCACCCCCTCGCTGGTCAGGGCCTGAACCTCGGCCAGGCGGATGTT GCGTCGCTCTCCAAGACGATCCAGTATGCTGTCTCGCATGGCATGGATATCGGTGATTTGCTTGCTCTTGAGCGG TACTCGTCTGAGCGGTACTTGCCTAATGCGAAGATCGGCGGCGCTTGCGATCTCCTGCATAAGATGTATAATGTT CCTGGTGAAGGGCCGGTTGCTTGGGCGCGTAGTCTTGGACTCGGCGTCGTTGATCGCTTGCCTTTTGTTAAGTCG TTCTTGATGAAGAATGCGGAGGGATATTAG |
| Gene | >Pro_DTO377G3_2|g7630.t1 ATGCGTCCAATCTCCAGAGCTGTCCTTCGGCCGTATGTCTGCCCAACCTGCCGGCATGGCATTACCGCCGGTCGG CGGCAATTTGCATCTAAATCGGATTCCCCCGACCTATATGACGTGGTTTGTGTTGGAGGCGGGCCGGCAGGCCTA GGGCTATTGGCCGCACTTCGTATGTATACCATACGCAGATAAGCAGGGCATATACTGATACAATGCTACTACAGG AGCATCACCTATCACCTCAAAGCTCAAAGTCGCCCTCATTGAGACCCAAGATCTCCGCAAAGCCAAAGCCTGGGA CCTCGAACCGAACCAGTTCTCCAACCGGTGCAGCAGCTTGACCCCCTCGACCGTGGCGTTCCTGCGTAGCATTGG CGCCTACGATAAGCTCGATGTTAGTCGCGTGCAGGAATACCAGGACATGCAGGTCTGGGACGGCCAAACCGGGTC CCGAATATCATTCGATTGGTCAATGGAGACATCCCCATTCGAGGACATGCGCACTGTAGCAACCATGACCGAGAA CGCGAACCTGGTGCGCGCCCTGCTCCGCCGCATCGCCGACTCAGGTGACGAGAACCTCTCCCTCTTCTCAAACTC GACAGTCGCCTCCATCGAGAACGGCTCAGACCTCAAACCCGACGGTCCCGACCTCTCAGCCTGGCCCATCGTCAC CGTCAAGCCCACAGGCCCCGCCGCGGAAACAGAGCCACCCAAGCGCATCGCGGCCCGCCTCCTCGTCGGTGCAGA CGGTATCAACAGCCCCGTCCGCACCTTCGCCGACATCCCCACCCAAGGCTGGGACTACGGCCGCCACGGCATCGT CGCAACCCTCGCTCTCGCCGAGCCAGCCACCGCGCCCTTCCCGGCCTCCAAGCGCACAGCCTACCAGCGCTTCCT CCCCGCTCTCGGCGGCCCCATCGCCCTCCTCCCGCTGCCAAACAACCACGCCACCCTCGTCTGGTCAACGACCCC CGAGCACGCAGCCTACCTAAAGTCCCTCCCCACCCCGGCCTTCCTCGCCATGGTCAACGCCGCCTTCCGTCTCGA CATGACAGACCTCACCTACATGATGGGCATGCAATCCTCCTCCTCCGATTCCACCCCATCCCACCAAGACGAACT CGCCTGGCGCGTCCAGCACACCCCCCTCCCAGCCCAAGTCCCTCCCCCAGCAACAGGTGTGCAGACAGGAACAGT CGCTTCCTTCCCGCTGCGCTTCCGACACGCCGCGCAGTACGTCTCGCCGCGCGTTGCGCTCGTCGGCGACGCCGC ACACGTCATTCACCCCCTCGCTGGTCAGGGCCTGAACCTCGGCCAGGCGGATGTTGCGTCGCTCTCCAAGACGAT CCAGTATGCTGTCTCGCATGGCATGGATATCGGTGATTTGCTTGCTCTTGAGCGGTACTCGTCTGAGCGGTACTT GCCTAATGCGAAGATCGGCGGCGCTTGCGATCTCCTGCATAAGATGTATAATGTTCCTGGTGAAGGGCCGGTTGC TTGGGCGCGTAGTCTTGGACTCGGCGTCGTTGATCGCTTGCCTTTTGTTAAGTCGTTCTTGATGAAGAATGCGGA GGGATATTAG |