© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7628.t1 |
| Gene name | |
| Location | scaffold_24:359535..362097 |
| Strand | + |
| Gene length (bp) | 2562 |
| Transcript length (bp) | 2511 |
| Coding sequence length (bp) | 2511 |
| Protein length (aa) | 837 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00082 | Peptidase_S8 | Subtilase family | 1.7E-40 | 187 | 440 |
| PF01483 | P_proprotein | Proprotein convertase P-domain | 3.9E-25 | 525 | 611 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006508 | proteolysis | Yes |
| GO:0004252 | serine-type endopeptidase activity | Yes |
| GO:0008236 | serine-type peptidase activity | Yes |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008233 | peptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0017171 | serine hydrolase activity | No |
| GO:0004175 | endopeptidase activity | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 724 | 746 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 39.03 | 23.72 | 54.34 |
| 5d_25C | Five days - 25 degrees Celsius | 40.29 | 24.51 | 56.06 |
| 7d_25C | Seven days - 25 degrees Celsius | 43.37 | 26.38 | 60.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 44.12 | 26.80 | 61.43 |
| 7d_15C | Seven days - 15 degrees Celsius | 36.82 | 22.24 | 51.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 37.53 | 22.77 | 52.30 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.924402 | no |
| 3d_25C | 7d_25C | 0.718255 | no |
| 3d_25C | 7d_15C | 0.855659 | no |
| 3d_25C | 7d_30C | 0.908394 | no |
| 3d_25C | 10d_25C | 0.662223 | no |
| 5d_25C | 7d_25C | 0.810833 | no |
| 5d_25C | 7d_15C | 0.762718 | no |
| 5d_25C | 7d_30C | 0.818806 | no |
| 5d_25C | 10d_25C | 0.755800 | no |
| 7d_25C | 7d_15C | 0.530648 | no |
| 7d_25C | 7d_30C | 0.594429 | no |
| 7d_25C | 10d_25C | 0.962951 | no |
| 7d_15C | 7d_30C | 0.958751 | no |
| 7d_15C | 10d_25C | 0.478328 | no |
| 7d_30C | 10d_25C | 0.535952 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7628.t1 MRIVSGITATLGLAGAVSANLHPRSQETRDFFALQLDDTTSPSHIAQILGARHEGQIGQLDGHHTFSLPREQTPQ FDTLLNDLRTRRKLRRRSGAIGSSDDPLDKILWSHKIAPARQRLQKRLPPVSVPYKSLDKREDAQAVAFRKDAMS TLGITDPIFKEQWHLINTKQPGHDLNVTGLWLEGITGKGVATAVVDDGLDMDSYDLKPNYLPEGSWDFNEGLPEP RPLLLDDKHGTRCCGEIAAAKNDVCGVGVAYDSKIAGIRILSKPIDDVDEAAAINYAYQKNDIYSCSWGPIDDGA TMDAPGILIKRAMVNGIQKGRGGKGSVYVFAAGNGASYGDNCNFDGYTNSIYSITVGAIDREGNHPPYSESCSAQ LVVAYSSGSGAYIHTTDVGARECSAGHGGTSAAGPLAAGSVALALSARPELTWRDLQYLMVETAVPVSEDDGSWQ NLPSGRKFSHDWGFGKVDTYTMVQLAKTWDLVKPQAWFNSPWLRVHQEIPQGDRGLLSHYTVTADQLKEANFAKL EHVTVTMNANHTRRGDISVELRSPAGIISYLSVAREKDVMPVGYEDWTFMSVAHWGESPIGDWSIIVKDSNVNEF TGAFIDWRLNLWGEAADGAKQELHPLPDDHDDDHPYEDAPVATTSVTAAPTKTPAPNPDDHHDRPVNAKPKPKPT TTNPTPIEDVKLPTSTTSNEAETPSASSAGSGYISSWLPTFGASKRTQIWIYASMAMIVTFFIGLGVYFQLQRVK RRRTTAHDDYEFEMIEDEDEMQPMTGASGRTQRRGGELYNAFAGESDEEMFSDDDDDQPYRDGLANIPEKDNGDG TSHGGPHLPKP* |
| Coding | >Pro_DTO377G3_2|g7628.t1 ATGCGCATTGTCAGCGGCATCACCGCCACCCTAGGTCTTGCTGGTGCGGTGTCCGCGAACCTACACCCTCGCTCT CAAGAAACCCGCGACTTCTTCGCCCTCCAGCTCGACGATACCACCTCTCCTTCCCACATCGCACAGATCCTAGGC GCACGCCACGAGGGCCAGATTGGCCAACTGGATGGCCACCACACTTTTTCATTACCGCGGGAACAGACCCCTCAG TTTGACACCTTGTTGAATGATTTACGGACCAGGCGAAAGCTCCGGCGGCGCTCCGGCGCAATCGGGTCAAGTGAT GACCCCTTAGACAAGATCCTGTGGTCGCATAAGATTGCTCCAGCGAGACAACGATTGCAGAAACGACTTCCGCCG GTCTCCGTACCATATAAATCGCTGGACAAGAGGGAAGATGCGCAGGCCGTTGCTTTCCGGAAGGATGCCATGTCA ACTCTAGGGATCACTGACCCGATCTTCAAAGAACAATGGCATCTTATCAACACAAAACAGCCCGGACACGATCTC AATGTGACAGGACTGTGGTTGGAGGGGATAACCGGCAAGGGCGTGGCCACTGCAGTTGTCGACGATGGGCTGGAC ATGGATAGCTATGACCTCAAGCCTAACTACCTTCCAGAGGGCTCCTGGGATTTCAACGAGGGCCTCCCCGAACCC CGCCCTCTTCTGCTTGACGATAAGCATGGTACTCGATGCTGCGGCGAGATCGCGGCGGCAAAGAACGACGTTTGT GGAGTCGGTGTTGCGTACGATAGCAAGATAGCCGGCATTCGGATCTTGTCCAAGCCTATCGATGATGTCGATGAA GCGGCGGCTATTAACTACGCCTACCAGAAGAATGACATATATTCATGTTCATGGGGGCCTATCGACGATGGTGCT ACTATGGATGCGCCTGGAATCTTGATCAAGCGCGCCATGGTCAACGGTATCCAAAAGGGCAGAGGGGGTAAAGGC TCTGTCTATGTCTTTGCCGCCGGTAACGGTGCGTCCTACGGGGACAACTGCAACTTCGATGGGTATACCAACAGT ATCTACAGTATTACAGTCGGTGCCATAGACCGGGAAGGGAATCACCCGCCTTACTCCGAGTCATGCTCGGCCCAA CTTGTGGTCGCATACAGTAGCGGCTCCGGTGCTTATATTCACACTACCGACGTCGGTGCAAGAGAGTGCTCCGCT GGACATGGTGGCACCTCTGCGGCTGGTCCGCTGGCCGCAGGCAGCGTGGCGCTCGCGCTCAGTGCACGCCCGGAG CTGACCTGGCGTGATTTACAGTACTTGATGGTGGAGACGGCGGTCCCCGTGAGCGAAGACGACGGTAGCTGGCAG AACCTGCCCTCTGGCCGCAAGTTCAGCCACGACTGGGGTTTCGGAAAGGTCGATACATATACCATGGTCCAGCTT GCTAAGACTTGGGATCTCGTGAAGCCTCAAGCGTGGTTCAACTCGCCATGGCTGCGAGTGCACCAAGAGATCCCC CAGGGTGATCGGGGTCTGCTCAGTCACTATACGGTAACTGCTGATCAATTGAAAGAGGCCAACTTCGCTAAATTG GAACATGTCACTGTGACTATGAATGCCAATCACACCCGCCGCGGCGACATCAGCGTTGAGCTGCGCAGCCCCGCT GGAATCATCAGCTATCTGAGTGTTGCCCGCGAAAAGGATGTCATGCCGGTTGGGTATGAGGATTGGACTTTCATG TCTGTTGCTCATTGGGGTGAATCACCTATTGGCGATTGGTCCATCATCGTGAAAGACTCCAATGTCAATGAATTC ACCGGCGCATTCATTGATTGGCGACTCAATCTGTGGGGTGAGGCCGCCGATGGAGCTAAACAAGAGCTCCACCCC CTGCCCGATGACCACGACGACGACCATCCTTACGAGGATGCTCCTGTAGCCACGACTAGTGTTACGGCGGCCCCA ACAAAGACCCCAGCTCCTAACCCGGATGACCATCATGACCGGCCTGTGAACGCAAAGCCAAAGCCAAAACCAACA ACCACAAACCCCACGCCAATTGAAGATGTGAAGCTGCCCACGAGTACTACTAGCAATGAGGCTGAAACGCCCTCT GCTTCGTCCGCCGGATCAGGCTACATATCCTCTTGGCTTCCCACTTTCGGTGCTTCGAAGCGTACACAGATTTGG ATTTATGCATCCATGGCCATGATCGTTACCTTCTTCATTGGATTGGGTGTCTACTTCCAGCTGCAGAGGGTCAAG CGTCGTCGCACCACTGCTCACGATGACTACGAGTTTGAAATGATTGAGGATGAAGATGAGATGCAACCGATGACT GGAGCATCTGGTCGAACACAGCGTCGTGGCGGTGAGCTGTATAATGCATTTGCTGGGGAGAGTGACGAGGAAATG TTCAGTGATGATGATGATGATCAGCCGTATCGCGATGGGTTGGCCAATATCCCGGAAAAAGACAATGGAGATGGA ACGTCTCACGGTGGCCCCCATCTACCAAAACCTTAA |
| Transcript | >Pro_DTO377G3_2|g7628.t1 ATGCGCATTGTCAGCGGCATCACCGCCACCCTAGGTCTTGCTGGTGCGGTGTCCGCGAACCTACACCCTCGCTCT CAAGAAACCCGCGACTTCTTCGCCCTCCAGCTCGACGATACCACCTCTCCTTCCCACATCGCACAGATCCTAGGC GCACGCCACGAGGGCCAGATTGGCCAACTGGATGGCCACCACACTTTTTCATTACCGCGGGAACAGACCCCTCAG TTTGACACCTTGTTGAATGATTTACGGACCAGGCGAAAGCTCCGGCGGCGCTCCGGCGCAATCGGGTCAAGTGAT GACCCCTTAGACAAGATCCTGTGGTCGCATAAGATTGCTCCAGCGAGACAACGATTGCAGAAACGACTTCCGCCG GTCTCCGTACCATATAAATCGCTGGACAAGAGGGAAGATGCGCAGGCCGTTGCTTTCCGGAAGGATGCCATGTCA ACTCTAGGGATCACTGACCCGATCTTCAAAGAACAATGGCATCTTATCAACACAAAACAGCCCGGACACGATCTC AATGTGACAGGACTGTGGTTGGAGGGGATAACCGGCAAGGGCGTGGCCACTGCAGTTGTCGACGATGGGCTGGAC ATGGATAGCTATGACCTCAAGCCTAACTACCTTCCAGAGGGCTCCTGGGATTTCAACGAGGGCCTCCCCGAACCC CGCCCTCTTCTGCTTGACGATAAGCATGGTACTCGATGCTGCGGCGAGATCGCGGCGGCAAAGAACGACGTTTGT GGAGTCGGTGTTGCGTACGATAGCAAGATAGCCGGCATTCGGATCTTGTCCAAGCCTATCGATGATGTCGATGAA GCGGCGGCTATTAACTACGCCTACCAGAAGAATGACATATATTCATGTTCATGGGGGCCTATCGACGATGGTGCT ACTATGGATGCGCCTGGAATCTTGATCAAGCGCGCCATGGTCAACGGTATCCAAAAGGGCAGAGGGGGTAAAGGC TCTGTCTATGTCTTTGCCGCCGGTAACGGTGCGTCCTACGGGGACAACTGCAACTTCGATGGGTATACCAACAGT ATCTACAGTATTACAGTCGGTGCCATAGACCGGGAAGGGAATCACCCGCCTTACTCCGAGTCATGCTCGGCCCAA CTTGTGGTCGCATACAGTAGCGGCTCCGGTGCTTATATTCACACTACCGACGTCGGTGCAAGAGAGTGCTCCGCT GGACATGGTGGCACCTCTGCGGCTGGTCCGCTGGCCGCAGGCAGCGTGGCGCTCGCGCTCAGTGCACGCCCGGAG CTGACCTGGCGTGATTTACAGTACTTGATGGTGGAGACGGCGGTCCCCGTGAGCGAAGACGACGGTAGCTGGCAG AACCTGCCCTCTGGCCGCAAGTTCAGCCACGACTGGGGTTTCGGAAAGGTCGATACATATACCATGGTCCAGCTT GCTAAGACTTGGGATCTCGTGAAGCCTCAAGCGTGGTTCAACTCGCCATGGCTGCGAGTGCACCAAGAGATCCCC CAGGGTGATCGGGGTCTGCTCAGTCACTATACGGTAACTGCTGATCAATTGAAAGAGGCCAACTTCGCTAAATTG GAACATGTCACTGTGACTATGAATGCCAATCACACCCGCCGCGGCGACATCAGCGTTGAGCTGCGCAGCCCCGCT GGAATCATCAGCTATCTGAGTGTTGCCCGCGAAAAGGATGTCATGCCGGTTGGGTATGAGGATTGGACTTTCATG TCTGTTGCTCATTGGGGTGAATCACCTATTGGCGATTGGTCCATCATCGTGAAAGACTCCAATGTCAATGAATTC ACCGGCGCATTCATTGATTGGCGACTCAATCTGTGGGGTGAGGCCGCCGATGGAGCTAAACAAGAGCTCCACCCC CTGCCCGATGACCACGACGACGACCATCCTTACGAGGATGCTCCTGTAGCCACGACTAGTGTTACGGCGGCCCCA ACAAAGACCCCAGCTCCTAACCCGGATGACCATCATGACCGGCCTGTGAACGCAAAGCCAAAGCCAAAACCAACA ACCACAAACCCCACGCCAATTGAAGATGTGAAGCTGCCCACGAGTACTACTAGCAATGAGGCTGAAACGCCCTCT GCTTCGTCCGCCGGATCAGGCTACATATCCTCTTGGCTTCCCACTTTCGGTGCTTCGAAGCGTACACAGATTTGG ATTTATGCATCCATGGCCATGATCGTTACCTTCTTCATTGGATTGGGTGTCTACTTCCAGCTGCAGAGGGTCAAG CGTCGTCGCACCACTGCTCACGATGACTACGAGTTTGAAATGATTGAGGATGAAGATGAGATGCAACCGATGACT GGAGCATCTGGTCGAACACAGCGTCGTGGCGGTGAGCTGTATAATGCATTTGCTGGGGAGAGTGACGAGGAAATG TTCAGTGATGATGATGATGATCAGCCGTATCGCGATGGGTTGGCCAATATCCCGGAAAAAGACAATGGAGATGGA ACGTCTCACGGTGGCCCCCATCTACCAAAACCTTAA |
| Gene | >Pro_DTO377G3_2|g7628.t1 ATGCGCATTGTCAGCGGCATCACCGCCACCCTAGGTCTTGCTGGTGCGGTGTCCGCGAACCTACACCCTCGCTCT CAAGAAACCCGCGACTTCTTCGCCCTCCAGCTCGACGATACCACCTCTCCTTCCCACATCGCACAGATCCTAGGC GCACGCCACGAGGGCCAGATTGGCCAACTGGATGGCCACCACACTTTTTCATTACCGCGGGAACAGACCCCTCAG TTTGACACCTTGTTGAATGATTTACGGACCAGGCGAAAGCTCCGGCGGCGCTCCGGCGCAATCGGGTCAAGTGAT GACCCCTTAGACAAGATCCTGTGGTCGCATAAGATTGCTCCAGCGAGACAACGATTGCAGAAACGACTTCCGCCG GTCTCCGTACCATATAAATCGCTGGACAAGAGGGAAGATGCGCAGGCCGTTGCTTTCCGGAAGGATGCCATGTCA ACTCTAGGGATCACTGACCCGATCTTCAAAGAACAATGGCATCTTATCAACACAAAACAGCCCGGACACGATCTC AATGTGACAGGACTGTGGTTGGAGGGGATAACCGGCAAGGGCGTGGCCACTGCAGTTGTCGACGATGGGCTGGAC ATGGATAGCTATGACCTCAAGCCTAACTACCTTCCAGAGGGCTCCTGGGATTTCAACGAGGGCCTCCCCGAACCC CGCCCTCTTCTGCTTGACGATAAGCATGGTACTCGATGCTGCGGCGAGATCGCGGCGGCAAAGAACGACGTTTGT GGAGTCGGTGTTGCGTACGATAGCAAGATAGCCGGCATTCGGATCTTGTCCAAGCCTATCGATGATGTCGATGAA GCGGCGGCTATTAACTACGCCTACCAGAAGAATGACATATATTCATGTTCATGGGGGCCTATCGACGATGGTGCT ACTATGGATGCGCCTGGAATCTTGATCAAGCGCGCCATGGTCAACGGTATCCAAAAGGGCAGAGGGGGTAAAGGC TCTGTCTATGTCTTTGCCGCCGGTAACGGTGCGTCCTACGGGGACAACTGCAACTTCGATGGGTATACCAACAGT ATCTACAGTATTACAGTCGGTGCCATAGACCGGGAAGGGAATCACCCGCCTTACTCCGAGTCATGCTCGGCCCAA CTTGTGGTCGCATACAGTAGCGGCTCCGGTGCTTATATTCACACTACCGACGTCGGTGCAAGAGAGTGCTCCGCT GGACATGGTGGCACCTCTGCGGCTGGTCCGCTGGCCGCAGGCAGCGTGGCGCTCGCGCTCAGTGCACGCCCGGAG CTGACCTGGCGTGATTTACAGTACTTGATGGTGGAGACGGCGGTCCCCGTGAGCGAAGACGACGGTAGCTGGCAG AACCTGCCCTCTGGCCGCAAGTTCAGCCACGACTGGGGTTTCGGAAAGGTCGATACATATACCATGGTCCAGCTT GCTAAGACTTGGGATCTCGTGAAGCCTCAAGCGTGGTTCAACTCGCCATGGCTGCGAGTGCACCAAGAGATCCCC CAGGGTGATCGGGGTCTGCTCAGTCACTATACGGTAACTGCTGATCAATTGAAAGAGGCCAACTTCGCTAAATTG GAACATGTCACTGTGACTATGAATGCCAATCACACCCGCCGCGGCGACATCAGCGTTGAGCTGCGCAGCCCCGCT GGAATCATCAGCTATCTGAGTGTTGCCCGCGAAAAGGATGTCATGCCGGTTGGGTATGAGGATTGGACTTTCATG TCTGTTGCTCATTGGTATGTGTTGCTGCCAATTCCATGATATACGCTTTGCTAATTTATTCTTAGGGGTGAATCA CCTATTGGCGATTGGTCCATCATCGTGAAAGACTCCAATGTCAATGAATTCACCGGCGCATTCATTGATTGGCGA CTCAATCTGTGGGGTGAGGCCGCCGATGGAGCTAAACAAGAGCTCCACCCCCTGCCCGATGACCACGACGACGAC CATCCTTACGAGGATGCTCCTGTAGCCACGACTAGTGTTACGGCGGCCCCAACAAAGACCCCAGCTCCTAACCCG GATGACCATCATGACCGGCCTGTGAACGCAAAGCCAAAGCCAAAACCAACAACCACAAACCCCACGCCAATTGAA GATGTGAAGCTGCCCACGAGTACTACTAGCAATGAGGCTGAAACGCCCTCTGCTTCGTCCGCCGGATCAGGCTAC ATATCCTCTTGGCTTCCCACTTTCGGTGCTTCGAAGCGTACACAGATTTGGATTTATGCATCCATGGCCATGATC GTTACCTTCTTCATTGGATTGGGTGTCTACTTCCAGCTGCAGAGGGTCAAGCGTCGTCGCACCACTGCTCACGAT GACTACGAGTTTGAAATGATTGAGGATGAAGATGAGATGCAACCGATGACTGGAGCATCTGGTCGAACACAGCGT CGTGGCGGTGAGCTGTATAATGCATTTGCTGGGGAGAGTGACGAGGAAATGTTCAGTGATGATGATGATGATCAG CCGTATCGCGATGGGTTGGCCAATATCCCGGAAAAAGACAATGGAGATGGAACGTCTCACGGTGGCCCCCATCTA CCAAAACCTTAA |