© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7621.t1 |
| Gene name | |
| Location | scaffold_24:339049..339797 |
| Strand | - |
| Gene length (bp) | 748 |
| Transcript length (bp) | 573 |
| Coding sequence length (bp) | 573 |
| Protein length (aa) | 191 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05832 | DUF846 | Eukaryotic protein of unknown function (DUF846) | 1.8E-47 | 18 | 158 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016021 | integral component of membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| GO:0031224 | intrinsic component of membrane | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 21 | 43 | 22 |
| 2 | 47 | 64 | 17 |
| 3 | 110 | 129 | 19 |
| 4 | 133 | 155 | 22 |
| 5 | 167 | 189 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 88.64 | 47.21 | 130.08 |
| 5d_25C | Five days - 25 degrees Celsius | 87.37 | 46.40 | 128.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 86.27 | 45.70 | 126.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 69.33 | 35.02 | 103.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 93.58 | 49.02 | 138.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 80.34 | 41.76 | 118.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.971971 | no |
| 3d_25C | 7d_25C | 0.949397 | no |
| 3d_25C | 7d_15C | 0.890770 | no |
| 3d_25C | 7d_30C | 0.782003 | no |
| 3d_25C | 10d_25C | 0.408324 | no |
| 5d_25C | 7d_25C | 0.976897 | no |
| 5d_25C | 7d_15C | 0.856525 | no |
| 5d_25C | 7d_30C | 0.817904 | no |
| 5d_25C | 10d_25C | 0.442550 | no |
| 7d_25C | 7d_15C | 0.831601 | no |
| 7d_25C | 7d_30C | 0.854589 | no |
| 7d_25C | 10d_25C | 0.487578 | no |
| 7d_15C | 7d_30C | 0.645022 | no |
| 7d_15C | 10d_25C | 0.297965 | no |
| 7d_30C | 10d_25C | 0.663230 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7621.t1 MDQGQGGQGELNWRLSAHPITLLVFLSIRIGALLMYLFGVLFINNFILVFIFTLLLLSADFYYLKNIAGRRLVGL RWWNEVDTSTGDSQWVFESADPNVRTITATDKRFFWLSLYVTPALWVALAILAIVRLVGVIWLSLIVIALILTIT NTMAFSRCDKFGQASTYANSALGGGIVNNIAGGLLGRLFR* |
| Coding | >Pro_DTO377G3_2|g7621.t1 ATGGACCAAGGACAAGGAGGCCAAGGCGAGCTCAACTGGCGCCTCAGCGCGCACCCGATCACGCTACTTGTCTTC TTAAGTATTCGGATCGGCGCGCTACTGATGTATCTATTTGGTGTACTCTTCATCAACAACTTTATCCTCGTCTTC ATTTTCACCCTTCTCCTCCTCTCCGCGGATTTCTATTACCTCAAAAACATCGCGGGACGCCGGCTGGTCGGCCTA CGTTGGTGGAACGAGGTCGACACCTCAACCGGCGACTCACAGTGGGTCTTCGAATCAGCCGACCCTAACGTTCGC ACTATAACCGCCACCGACAAGCGGTTCTTCTGGCTGAGCTTATATGTCACACCAGCTCTGTGGGTAGCCCTTGCC ATATTGGCTATTGTGAGACTTGTCGGTGTCATTTGGCTTAGTTTGATTGTTATTGCACTCATCTTGACTATCACG AATACCATGGCCTTCTCTCGCTGTGATAAATTTGGTCAGGCCTCGACATATGCCAACTCGGCTCTGGGTGGTGGT ATTGTGAACAACATCGCTGGTGGCCTGCTGGGCAGGCTATTCCGGTAA |
| Transcript | >Pro_DTO377G3_2|g7621.t1 ATGGACCAAGGACAAGGAGGCCAAGGCGAGCTCAACTGGCGCCTCAGCGCGCACCCGATCACGCTACTTGTCTTC TTAAGTATTCGGATCGGCGCGCTACTGATGTATCTATTTGGTGTACTCTTCATCAACAACTTTATCCTCGTCTTC ATTTTCACCCTTCTCCTCCTCTCCGCGGATTTCTATTACCTCAAAAACATCGCGGGACGCCGGCTGGTCGGCCTA CGTTGGTGGAACGAGGTCGACACCTCAACCGGCGACTCACAGTGGGTCTTCGAATCAGCCGACCCTAACGTTCGC ACTATAACCGCCACCGACAAGCGGTTCTTCTGGCTGAGCTTATATGTCACACCAGCTCTGTGGGTAGCCCTTGCC ATATTGGCTATTGTGAGACTTGTCGGTGTCATTTGGCTTAGTTTGATTGTTATTGCACTCATCTTGACTATCACG AATACCATGGCCTTCTCTCGCTGTGATAAATTTGGTCAGGCCTCGACATATGCCAACTCGGCTCTGGGTGGTGGT ATTGTGAACAACATCGCTGGTGGCCTGCTGGGCAGGCTATTCCGGTAA |
| Gene | >Pro_DTO377G3_2|g7621.t1 ATGGACCAAGGACAAGGAGGCCAAGGCGAGCTCAACTGGCGCCTCAGCGCGCACCCGATCACGCTACTTGTCTTC TTAAGTATTCGGATCGGTCCGTATTCCCCCACCCCGAGTAAAAGCAGCAAGAATGATTTGGCTAACTTCATGATT AGGCGCGCTACTGATGTATCTATTTGGTGTACTCTTCATCAACAACTTGTACGGAACCTGCGAACTACCCGCCTG TCAACCTGCGATGCTAACGTTCATGTAGTATCCTCGTCTTCATTTTCACCCTTCTCCTCCTCTCCGCGGATTTCT ATTACCTCAAAAACATCGCGGGACGCCGGCTGGTCGGCCTACGTTGGTGGAACGAGGTCGACACCTCAACCGGCG ACTCACAGTGGGTCTTCGAATCAGCCGACCCTAACGTTCGCACTATAACCGCCACCGACAAGCGGTTCTTCTGGC TGAGCTTATATGTCACACCAGCTCTGTGGGTAGCCCTTGCCATATTGGCTATTGTGAGACTTGTCGGTGTCATTT GGCTTAGTTTGATTGGTAAGTTACTCCCAAGATACTTTGATATATGCCGGCAGTAGATATTGACTTTGGTTTAGT TATTGCACTCATCTTGACTATCACGAATACCATGGCCTTCTCTCGCTGTGATAAATTTGGTCAGGCCTCGACATA TGCCAACTCGGCTCTGGGTGGTGGTATTGTGAACAACATCGCTGGTGGCCTGCTGGGCAGGCTATTCCGGTAA |