Protein ID | Pro_DTO377G3_2|g760.t1 |
Gene name | |
Location | scaffold_01:1970416..1974225 |
Strand | + |
Gene length (bp) | 3809 |
Transcript length (bp) | 2568 |
Coding sequence length (bp) | 2568 |
Protein length (aa) | 856 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF01476 | LysM | LysM domain | 2.7E-07 | 230 | 274 |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
Yes | 1 - 24 | 0.45 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 4.29 | 1.66 | 6.91 |
5d_25C | Five days - 25 degrees Celsius | 8.58 | 4.12 | 13.05 |
7d_25C | Seven days - 25 degrees Celsius | 11.94 | 6.22 | 17.65 |
10d_25C | Ten days - 25 degrees Celsius | 15.84 | 8.75 | 22.93 |
7d_15C | Seven days - 15 degrees Celsius | 3.54 | 1.24 | 5.84 |
7d_30C | Seven days - 30 degrees Celsius | 8.75 | 4.17 | 13.34 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.024417 | yes |
3d_25C | 7d_25C | 0.000700 | yes |
3d_25C | 7d_15C | 0.663439 | no |
3d_25C | 7d_30C | 0.019624 | yes |
3d_25C | 10d_25C | 0.000700 | yes |
5d_25C | 7d_25C | 0.262882 | no |
5d_25C | 7d_15C | 0.007091 | yes |
5d_25C | 7d_30C | 0.966695 | no |
5d_25C | 10d_25C | 0.018560 | yes |
7d_25C | 7d_15C | 0.000700 | yes |
7d_25C | 7d_30C | 0.296486 | no |
7d_25C | 10d_25C | 0.306203 | no |
7d_15C | 7d_30C | 0.002761 | yes |
7d_15C | 10d_25C | 0.000700 | yes |
7d_30C | 10d_25C | 0.022681 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g760.t1 MALLRASAALAVVLMLQSHHAAAWGNSDTLYIYNSDTLADISASEACVNAMSSNVSCYAGLSQAVTQTTSWSANA LSEMCTSGCSSALSSYVSSVDEACGTSTQYNISGISQTASDRGKEMKWRYDATCLTDSASGTYCNTLFQNAISNG TTNIKCSACYLEYLSTLVNSKWGQDILLSPSALTSQVSSCSTSGYSVTYTPTSTASSTASASATVAASRCNTTDP DQTVYKVESGDTCLSISAAQNVSTSALINLNSLDTGCTHIVAGAEICLPDVCEIYRVQETDTIDKIVASLSRQVS VPQFVAWNANLNSAQSSQNLTAVSGKYICVSPPGTLTLPDTLALRPASTAVSLPTDAVTSSNTDCGHWYQVQDGD TCESVCDKFSISQYNFNFLNPQAALNATSSCGSLWKGNSYCVQAVGNINTYTSYISNTTRTRTSLASTMNLNATR TANHSTTNLFWSFPSDLTTASTWTPDSAYLASLATYTLCDQVNSVYNITDDDLTDEMYHDEVWLSEYERVCYPPV NGSFPTTGFNFSITLTDDPSMGSSTNFDAASRAWRHFVREQWVGGDGADQQKRALIERWATADQQFRDSYQSRAP EDEPSFFEGPELTDKTFGANDVQSSCMVYFYTTELTPEKEALLAKCILGLFPWEDGWDFLADEMIVFVPPEDNKG NVLETFKFYQSVARPNFLDMHMALDGTVLFRDCSPKLIIDDRTLETGLGLWVDFTTNGIYEIARRGQIMMEEFAY FYREIGPGNRVPIDQALNYIEDREIYIDRDEDADPREILEDEPVDMRRPLVEIYKGNEVDLVDDYAPGFREAEEQ GDGLAIGFDLERILANDGNPLIVRDHGSDH* |
Coding | >Pro_DTO377G3_2|g760.t1 ATGGCACTCTTGAGGGCAAGTGCTGCATTGGCAGTAGTTCTGATGCTACAGTCTCATCATGCCGCTGCTTGGGGA AATTCAGACACTCTCTACATTTACAACTCTGATACTCTGGCTGATATATCAGCTTCAGAAGCATGCGTGAATGCC ATGTCCAGCAATGTTTCATGCTATGCCGGCTTGAGCCAGGCAGTCACCCAGACGACATCATGGTCAGCCAATGCA CTGTCGGAAATGTGTACCAGCGGTTGCTCTTCCGCTTTGTCAAGCTATGTCTCCTCTGTGGACGAAGCCTGCGGC ACAAGTACGCAGTACAACATCTCCGGTATCTCACAAACTGCCTCGGATAGAGGCAAAGAAATGAAATGGCGTTAC GATGCAACCTGCTTGACTGATTCGGCTTCGGGCACCTATTGCAACACCCTATTCCAAAATGCAATTTCGAATGGC ACAACAAACATCAAATGCAGCGCATGCTATTTGGAGTATTTGTCAACCCTAGTGAATTCCAAATGGGGTCAGGAT ATTTTGCTCAGTCCGTCGGCCTTAACGAGTCAAGTATCTTCTTGCTCGACCAGCGGATACTCTGTGACTTATACA CCAACCTCGACTGCCTCTTCCACGGCCTCTGCCTCGGCCACTGTTGCCGCTAGTCGCTGCAACACGACTGACCCC GATCAAACTGTTTACAAGGTTGAATCCGGAGATACCTGTCTTTCTATCTCAGCAGCTCAAAATGTCTCAACCTCA GCCTTGATAAACTTGAACAGCCTTGATACGGGGTGTACGCATATAGTTGCTGGGGCAGAGATTTGCCTTCCCGAT GTTTGTGAGATCTATCGCGTTCAGGAGACGGATACCATTGACAAAATCGTTGCGAGCCTATCGCGTCAAGTCTCT GTGCCTCAGTTTGTTGCATGGAATGCCAATCTCAACTCAGCGCAAAGCTCGCAGAATCTGACGGCTGTTTCGGGG AAGTACATCTGCGTCAGTCCTCCGGGTACTCTCACACTCCCCGATACCCTGGCTCTTAGGCCCGCAAGCACCGCT GTGTCTCTTCCTACCGACGCAGTCACTAGCTCCAACACCGACTGTGGTCACTGGTATCAGGTCCAAGATGGTGAT ACCTGTGAATCCGTGTGCGACAAATTCAGCATCTCTCAATATAATTTCAATTTCTTAAATCCCCAGGCCGCATTG AATGCAACCTCCAGTTGCGGCAGCCTCTGGAAAGGGAACAGCTACTGCGTTCAAGCAGTGGGTAACATCAACACC TATACAAGCTACATATCCAACACCACAAGAACACGCACATCACTTGCTAGCACCATGAATCTCAACGCAACCCGA ACAGCAAACCATAGCACCACCAATCTGTTCTGGTCATTCCCTTCCGACCTAACCACGGCCTCAACCTGGACCCCT GATTCAGCATACCTCGCATCTCTCGCGACCTACACTCTCTGCGACCAGGTCAACTCAGTGTACAACATCACCGAT GACGATCTAACAGACGAGATGTACCACGATGAAGTCTGGCTAAGTGAATACGAGCGCGTGTGCTATCCTCCCGTG AACGGTTCTTTCCCGACCACCGGGTTCAACTTCAGCATTACATTGACCGATGATCCAAGTATGGGAAGCTCGACG AATTTTGATGCCGCCTCTCGTGCATGGAGGCATTTTGTTCGTGAGCAGTGGGTCGGTGGCGACGGCGCGGATCAA CAGAAACGAGCGTTGATCGAACGCTGGGCAACAGCAGACCAACAATTCCGCGATAGCTATCAATCACGAGCCCCA GAGGACGAGCCTAGTTTTTTTGAAGGTCCTGAACTTACGGATAAAACTTTCGGAGCCAATGACGTTCAAAGTTCC TGCATGGTCTACTTCTACACCACCGAATTAACCCCCGAGAAAGAAGCCCTGCTCGCCAAGTGTATCCTGGGATTA TTCCCATGGGAAGACGGCTGGGACTTTCTAGCAGACGAAATGATAGTATTTGTTCCCCCTGAAGACAATAAGGGG AATGTTCTCGAGACATTTAAATTCTATCAAAGTGTCGCGCGACCCAACTTCCTCGATATGCACATGGCGCTTGAT GGAACTGTACTTTTCAGAGACTGCTCCCCCAAGCTTATTATCGATGACCGGACCCTTGAGACCGGACTAGGTCTC TGGGTTGATTTTACAACCAACGGTATCTACGAGATAGCCCGTCGGGGTCAAATTATGATGGAGGAATTCGCCTAC TTTTATCGGGAAATCGGTCCGGGAAATCGAGTCCCAATAGACCAGGCGCTCAATTACATTGAGGACCGGGAAATT TACATAGACCGCGACGAAGATGCAGATCCAAGAGAGATTTTGGAGGATGAACCAGTCGATATGCGACGGCCGCTT GTGGAAATCTACAAAGGGAATGAAGTCGATCTGGTGGATGACTATGCGCCAGGATTTCGCGAGGCGGAGGAGCAG GGTGACGGTTTAGCGATCGGATTTGATTTGGAAAGGATACTTGCGAACGATGGAAATCCCCTGATTGTCAGAGAT CATGGAAGTGACCATTAG |
Transcript | >Pro_DTO377G3_2|g760.t1 ATGGCACTCTTGAGGGCAAGTGCTGCATTGGCAGTAGTTCTGATGCTACAGTCTCATCATGCCGCTGCTTGGGGA AATTCAGACACTCTCTACATTTACAACTCTGATACTCTGGCTGATATATCAGCTTCAGAAGCATGCGTGAATGCC ATGTCCAGCAATGTTTCATGCTATGCCGGCTTGAGCCAGGCAGTCACCCAGACGACATCATGGTCAGCCAATGCA CTGTCGGAAATGTGTACCAGCGGTTGCTCTTCCGCTTTGTCAAGCTATGTCTCCTCTGTGGACGAAGCCTGCGGC ACAAGTACGCAGTACAACATCTCCGGTATCTCACAAACTGCCTCGGATAGAGGCAAAGAAATGAAATGGCGTTAC GATGCAACCTGCTTGACTGATTCGGCTTCGGGCACCTATTGCAACACCCTATTCCAAAATGCAATTTCGAATGGC ACAACAAACATCAAATGCAGCGCATGCTATTTGGAGTATTTGTCAACCCTAGTGAATTCCAAATGGGGTCAGGAT ATTTTGCTCAGTCCGTCGGCCTTAACGAGTCAAGTATCTTCTTGCTCGACCAGCGGATACTCTGTGACTTATACA CCAACCTCGACTGCCTCTTCCACGGCCTCTGCCTCGGCCACTGTTGCCGCTAGTCGCTGCAACACGACTGACCCC GATCAAACTGTTTACAAGGTTGAATCCGGAGATACCTGTCTTTCTATCTCAGCAGCTCAAAATGTCTCAACCTCA GCCTTGATAAACTTGAACAGCCTTGATACGGGGTGTACGCATATAGTTGCTGGGGCAGAGATTTGCCTTCCCGAT GTTTGTGAGATCTATCGCGTTCAGGAGACGGATACCATTGACAAAATCGTTGCGAGCCTATCGCGTCAAGTCTCT GTGCCTCAGTTTGTTGCATGGAATGCCAATCTCAACTCAGCGCAAAGCTCGCAGAATCTGACGGCTGTTTCGGGG AAGTACATCTGCGTCAGTCCTCCGGGTACTCTCACACTCCCCGATACCCTGGCTCTTAGGCCCGCAAGCACCGCT GTGTCTCTTCCTACCGACGCAGTCACTAGCTCCAACACCGACTGTGGTCACTGGTATCAGGTCCAAGATGGTGAT ACCTGTGAATCCGTGTGCGACAAATTCAGCATCTCTCAATATAATTTCAATTTCTTAAATCCCCAGGCCGCATTG AATGCAACCTCCAGTTGCGGCAGCCTCTGGAAAGGGAACAGCTACTGCGTTCAAGCAGTGGGTAACATCAACACC TATACAAGCTACATATCCAACACCACAAGAACACGCACATCACTTGCTAGCACCATGAATCTCAACGCAACCCGA ACAGCAAACCATAGCACCACCAATCTGTTCTGGTCATTCCCTTCCGACCTAACCACGGCCTCAACCTGGACCCCT GATTCAGCATACCTCGCATCTCTCGCGACCTACACTCTCTGCGACCAGGTCAACTCAGTGTACAACATCACCGAT GACGATCTAACAGACGAGATGTACCACGATGAAGTCTGGCTAAGTGAATACGAGCGCGTGTGCTATCCTCCCGTG AACGGTTCTTTCCCGACCACCGGGTTCAACTTCAGCATTACATTGACCGATGATCCAAGTATGGGAAGCTCGACG AATTTTGATGCCGCCTCTCGTGCATGGAGGCATTTTGTTCGTGAGCAGTGGGTCGGTGGCGACGGCGCGGATCAA CAGAAACGAGCGTTGATCGAACGCTGGGCAACAGCAGACCAACAATTCCGCGATAGCTATCAATCACGAGCCCCA GAGGACGAGCCTAGTTTTTTTGAAGGTCCTGAACTTACGGATAAAACTTTCGGAGCCAATGACGTTCAAAGTTCC TGCATGGTCTACTTCTACACCACCGAATTAACCCCCGAGAAAGAAGCCCTGCTCGCCAAGTGTATCCTGGGATTA TTCCCATGGGAAGACGGCTGGGACTTTCTAGCAGACGAAATGATAGTATTTGTTCCCCCTGAAGACAATAAGGGG AATGTTCTCGAGACATTTAAATTCTATCAAAGTGTCGCGCGACCCAACTTCCTCGATATGCACATGGCGCTTGAT GGAACTGTACTTTTCAGAGACTGCTCCCCCAAGCTTATTATCGATGACCGGACCCTTGAGACCGGACTAGGTCTC TGGGTTGATTTTACAACCAACGGTATCTACGAGATAGCCCGTCGGGGTCAAATTATGATGGAGGAATTCGCCTAC TTTTATCGGGAAATCGGTCCGGGAAATCGAGTCCCAATAGACCAGGCGCTCAATTACATTGAGGACCGGGAAATT TACATAGACCGCGACGAAGATGCAGATCCAAGAGAGATTTTGGAGGATGAACCAGTCGATATGCGACGGCCGCTT GTGGAAATCTACAAAGGGAATGAAGTCGATCTGGTGGATGACTATGCGCCAGGATTTCGCGAGGCGGAGGAGCAG GGTGACGGTTTAGCGATCGGATTTGATTTGGAAAGGATACTTGCGAACGATGGAAATCCCCTGATTGTCAGAGAT CATGGAAGTGACCATTAG |
Gene | >Pro_DTO377G3_2|g760.t1 ATGGCACTCTTGAGGGCAAGTGCTGCATTGGCAGTAGTTCTGATGCTACAGTCTCATCATGCCGCTGCTTGGGGA AATTCAGACACTCTCTACATTTACAACTCTGATACTCTGGCTGATATATCAGCTTCAGAAGCATGCGTGAATGCC ATGTCCAGCAATGTTTCATGCTATGCCGGCTTGAGCCAGGCAGTCACCCAGACGACATCATGGTCAGCCAATGCA CTGTCGGAAATGTGTACCAGCGGTTGCTCTTCCGCTTTGTCAAGCTATGTCTCCTCTGTGGACGAAGCCTGCGGC ACAAGTACGCAGTACAACATCTCCGGTATCTCACAAACTGCCTCGGATAGAGGCAAAGAAATGAAATGGCGTTAC GATGCAACCTGCTTGACTGATTCGGCTTCGGGCACCTATTGCAACACCCTATTCCAAAATGCAATTTCGAATGGC ACAACAAACATCAAATGCAGCGCATGCTATTTGGAGTATTTGTCAACCCTAGTGAATTCCAAATGGGGTCAGGAT ATTTTGCTCAGTCCGTCGGCCTTAACGAGTCAAGTATCTTCTTGCTCGACCAGCGGATACTCTGTGACTTATACA CCAACCTCGACTGCCTCTTCCACGGCCTCTGCCTCGGCCACTGTTGCCGCTAGTCGCTGCAACACGACTGACCCC GATCAAACTGTTTACAAGGTTGAATCCGGAGATACCTGTCTTTCTATCTCAGCAGCTCAAAATGTCTCAACCTCA GCCTTGATAAACTTGAACAGCCTTGATACGGGGTGTACGCATATAGTTGCTGGGGCAGAGATTTGCCTTCCCGAT GTTTGTGAGATCTATCGCGTTCAGGAGACGGATACCATTGACAAAATCGTTGCGAGCCTATCGCGTCAAGTCTCT GTGCCTCAGTTTGTTGCATGGAATGCCAATCTCAACTCAGCGCAAAGCTCGCAGAATCTGACGGCTGTTTCGGGG AAGTACATCTGCGTCAGTCCTCCGGGTACTCTCACACTCCCCGATACCCTGGCTCTTAGGCCCGCAAGCACCGCT GTGTATGTTGTCTGCTATTTTGTTTCGCTCGGTTGTTCGGAAAGTGAAAATGCTAATCAAATATACAGGTCTCTT CCTACCGACGCAGTCACTAGCTCCAACACCGACTGTGGTCACTGGTATCAGGTCCAAGATGGTGATACCTGTGAA TCCGTGTGCGACAAATTCAGCATCTCTCAATATAATTTCAATTTCTTAAATCCCCAGGCCGCATTGAATGCAACC TCCAGTTGCGGCAGCCTCTGGAAAGGGAACAGCTACGTACGTCTCTCTACACGAGAAAATAACCAAGACATATCG TTCTTTTCAGGCTAACCCATCCACTCCACAGTGCGTTCAAGCAGTGGGTAACATCAACACCTATACAAGCTACAT ATCCAACACCACAAGAACACGCACATCACTTGCTAGCACCATGAATCTCAACGCAACCCGAACAGCAAACCATAG CACCACCAATCTGTTCTGGTCATTCCCTTCCGACCTAACCACGGCCTCAACCTGGACCCCTGATTCAGCATACCT CGCATCTCTCGCGACCTACACTCTCTGCGACCAGGTCAACTCAGTGTACAACATCACCGATGACGATCTAACAGA CGAGATGTACCACGATGAAGTCTGGCTAAGTGAATACGAGCGCGTGTGCTATCCTCCCGTGAACGGTTCTTTCCC GACCACCGGGTTCAACTTCAGCATTACATTGACCGATGATCCAAGTATGGGAAGCTCGACGGTATTCACTTCTAG CCAAACAGCTAGCCCTCACGCATCATCTACGGTCACTACGGCGACCTCTACCACAGTTGCGACTCCTACGAGTAC GATTTCGGAGAACGGTCTCTGTGGCCCGTCTAATTCGGACTGGACTTGTTTGGGATCTCAATTTGGTGACTGCTG TAGTAACTACGGTTATTGTGGTAGTTCGTCGGAGTATTGTTCCAGCGCCAATTGTAATGCTAAGTATGGCTCGTG TGGTTGATCTTGGTTTGGGGGTGGGACACTCAATGCCCTAGAGTTCTAAAGTTCACTGTCGGACAAAATTCGGCT ATGGTCTTCAAGGCATGTCAAATGTTTATATATGCCATATTTTCTTCTAGTTTTAATTACTGGAATATAGAACTG GGATTTACCAGCTGGCTGTTAACTGGCACATAGTAGTGCATGGAAACCTGGAATTTATGAATATCAAACTTTCGC TTACATTTCAATGATTTTGGCACAAATTTACAACTTTACAACCAGAATTTTGAAAGCAAGCGGCTAGGCCGGAAA AGACGCTACTTAGTGCACACCAAGTTTGTGATCGATCCACTTCAACGAAAACCCTTTAAGCCAAAGACCCACTCC AGGGGTGTATATCCGAGCTCGCAACCACTTAATCTCCCCTATCAAAGCTTAGTCGTAAAGATTCCAAGGTCGCAT AATACAGGTTTAGTGTGTTTGAGATGAGTTTGTACAGGAACTTTTGAAAATATAACTAGATTTGATGCCTTAGTG CAAACTTGGGGCGGGCATGTATCAAACTCCGTTAAATACATTCCCGCCCCCCACGTTCCTCACTAAACTTCTTTT CAACCCCCGGAACTACCACCATTCGATCATGTCCTTAACAAGATCACATAGCCAGTGGCCTAGAGGCATCCCCTC TTTCATTCGCCGACATGAGGAACCCGTGGCCCGGAAGAATTTTGATGCCGCCTCTCGTGCATGGAGGCATTTTGT TCGTGAGCAGTGGGTCGGTGGCGACGGCGCGGATCAACAGAAACGAGCGTTGATCGAACGCTGGGCAACAGCAGA CCAACAATTCCGCGATGTATGTCTTTTGGATAAGAATTTTTATTTTTCACTGACACCATGACAGAGCTATCAATC ACGAGCCCCAGAGGACGAGCCTAGTTTTTTTGAAGGTCCTGAACTTACGGTATGAAACAATTAAATATATCCTAC TACCTGACTTATCCTAATCCAAGTATAGGATAAAACTTTCGGAGCCAATGACGTTCAAAGTTCCTGCATGGTCTA CTTCTACACCACCGAATTAACCCCCGAGAAAGAAGCCCTGCTCGCCAAGTGTATCCTGGGATTATTCCCATGGGA AGACGGCTGGGACTTTCTAGCAGACGAAATGATAGTATTTGTTCCCCCTGAAGACAATAAGGGGAATGTTCTCGA GACATTTAAATTCTATCAAAGTGTCGCGCGACCCAACTTCCTCGATATGCACATGGCGCTTGATGGAACTGTACT TTTCAGAGACTGCTCCCCCAAGCTTATTATCGATGACCGGACCCTTGAGACCGGACTAGGTCTCTGGGTTGATTT TACAACCAACGGTATCTACGAGATAGCCCGTCGGGGTCAAATTATGATGGAGGAATTCGCCTACTTTTATCGGGA AATCGGTCCGGGAAATCGAGTCCCAATAGACCAGGCGCTCAATTACATTGAGGACCGGGAAATTTACATAGACCG CGACGAAGATGCAGATCCAAGAGAGATTTTGGAGGATGAACCGTGAGTCTGTCCATTCTTGGTTACGAGATGGTT TATGTTAATTGGTGCTTAGAGTCGATATGCGACGGCCGCTTGTGGAAATCTACAAAGGGAATGAAGTCGATCTGG TGGATGACTATGCGCCAGGATTTCGCGAGGCGGAGGAGCAGGGTGACGGTTTAGCGATCGGATTTGATTTGGAAA GGATACTTGCGAACGATGGAAATCCCCTGATTGTCAGAGATCATGGAAGTGACCATTAG |