© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g76.t1 |
| Gene name | |
| Location | scaffold_01:194530..196415 |
| Strand | + |
| Gene length (bp) | 1885 |
| Transcript length (bp) | 1719 |
| Coding sequence length (bp) | 1719 |
| Protein length (aa) | 573 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02515 | CoA_transf_3 | CoA-transferase family III | 5.2E-39 | 257 | 448 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 8.38 | 3.49 | 13.27 |
| 5d_25C | Five days - 25 degrees Celsius | 6.15 | 2.30 | 10.00 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.45 | 4.65 | 16.25 |
| 10d_25C | Ten days - 25 degrees Celsius | 16.90 | 8.45 | 25.35 |
| 7d_15C | Seven days - 15 degrees Celsius | 8.67 | 3.65 | 13.69 |
| 7d_30C | Seven days - 30 degrees Celsius | 8.03 | 3.29 | 12.77 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.407067 | no |
| 3d_25C | 7d_25C | 0.568930 | no |
| 3d_25C | 7d_15C | 0.947246 | no |
| 3d_25C | 7d_30C | 0.932636 | no |
| 3d_25C | 10d_25C | 0.016361 | yes |
| 5d_25C | 7d_25C | 0.094004 | no |
| 5d_25C | 7d_15C | 0.346597 | no |
| 5d_25C | 7d_30C | 0.481507 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.639973 | no |
| 7d_25C | 7d_30C | 0.470530 | no |
| 7d_25C | 10d_25C | 0.100869 | no |
| 7d_15C | 7d_30C | 0.874448 | no |
| 7d_15C | 10d_25C | 0.019090 | yes |
| 7d_30C | 10d_25C | 0.010735 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g76.t1 MPPSAYSPVLETSRIFSALCDQSERFDLPPEVLANKDRVSFSTSHNEIYFPIPFKETETLAALKGIEGSVAAAIA DLRFGAGEEPRGIQVNLEAATAFGCQAYMAKVDGLSKLDPAVKTKLKNTDLLAAQSNGYRRMSANLYKTKNPGEY FHIHGSLEATTTLNMIGLEGQRPDLTDYEEIIKVIESKVQQYTAAELEDMNKEKRQAGVTAYKHEDFIKTPHGKL NVQEPAWKVSKLPGDLPPTPFPARRNGSKKILEGIKVLELCRIIAGPTITRILAEYGADVLKITSPNLSDVPFFQ VDGNMGKIAADLDLKSEAGRKEFEKLLDDVDVIVDGYRPGALDKLGYGAEAMAALAKKRGKGIVYVNENCFGYEG EWAGRAGWQQIADCVTGIAWAQGQFMGLSTPVVPPYPISDYGTGCMGAIAALTGLYHRAKTGGSYHGKASLMHYD LLLFAMGQYPADVQEELRKVQPPEFFKLRHCDSVDRISSTVLKGMQERFPHLYKPAGSESEGRKPLTELWTSRAY GADIEIVKPVVVIGGVDNQFVRSSRPNGFDRASWEEFSVKETDVKKC* |
| Coding | >Pro_DTO377G3_2|g76.t1 ATGCCACCCAGCGCGTACTCCCCGGTCCTTGAGACCAGTCGCATCTTCTCTGCGCTGTGTGACCAGTCGGAACGC TTCGACTTACCACCCGAGGTTCTTGCGAACAAAGACCGCGTTTCGTTCTCTACCAGTCATAATGAAATCTACTTC CCAATTCCCTTTAAAGAGACCGAGACTCTCGCTGCCCTGAAGGGTATCGAAGGTTCCGTGGCTGCGGCCATTGCC GACCTGCGCTTCGGTGCTGGTGAGGAACCTCGGGGCATTCAAGTCAACCTCGAAGCTGCCACTGCCTTTGGATGC CAAGCGTACATGGCAAAGGTTGATGGTCTGTCAAAATTGGACCCAGCTGTGAAAACAAAGCTGAAGAACACGGAT TTGCTGGCTGCCCAATCCAACGGCTACCGACGTATGTCGGCGAATCTTTACAAGACTAAGAACCCAGGCGAATAC TTCCATATCCATGGCTCTCTGGAGGCTACAACCACCTTGAACATGATTGGGCTCGAGGGCCAACGACCAGACCTG ACTGATTATGAAGAAATCATCAAGGTCATCGAGAGCAAAGTACAGCAATACACAGCTGCGGAGCTTGAAGATATG AACAAAGAGAAACGCCAGGCCGGTGTGACTGCTTACAAACATGAGGACTTTATCAAGACTCCCCATGGAAAACTT AATGTCCAAGAGCCTGCATGGAAAGTCAGCAAATTGCCTGGTGATCTTCCTCCAACTCCTTTCCCAGCTAGACGC AACGGCAGCAAGAAGATCCTCGAGGGCATCAAAGTACTGGAGCTCTGCCGTATCATCGCAGGCCCGACTATTACC CGCATTCTAGCCGAATATGGTGCCGATGTTTTGAAGATAACCAGCCCAAACCTTTCCGATGTGCCGTTTTTCCAA GTCGATGGTAACATGGGCAAGATTGCAGCAGATCTTGATTTGAAGAGCGAGGCTGGACGAAAGGAGTTTGAGAAG CTCCTGGATGACGTGGATGTCATCGTAGACGGCTACCGTCCCGGAGCACTAGATAAGCTTGGCTACGGAGCAGAG GCCATGGCTGCGTTGGCCAAGAAGCGCGGCAAAGGCATTGTTTACGTGAATGAGAACTGCTTCGGATACGAGGGC GAGTGGGCTGGCCGCGCTGGATGGCAGCAGATCGCAGATTGCGTGACTGGAATCGCCTGGGCCCAAGGCCAGTTC ATGGGCCTCTCAACACCCGTTGTACCTCCTTACCCCATCTCCGACTACGGCACAGGCTGCATGGGCGCCATCGCC GCGCTGACTGGTCTCTATCACCGCGCGAAGACCGGTGGCTCCTACCACGGCAAAGCTTCGCTCATGCACTACGAC CTTCTCCTCTTTGCAATGGGCCAATACCCCGCTGATGTGCAGGAGGAGCTTCGTAAGGTGCAACCGCCTGAGTTC TTCAAGTTGCGTCACTGCGACAGTGTTGACCGCATCTCGTCGACCGTGCTGAAGGGCATGCAGGAGCGATTCCCG CACTTGTACAAGCCTGCCGGTTCTGAGTCGGAAGGTCGCAAGCCATTGACAGAGTTATGGACATCGCGCGCATAT GGTGCGGATATCGAGATTGTGAAGCCAGTGGTAGTAATTGGCGGGGTGGATAATCAGTTTGTGCGGTCTAGTCGT CCGAACGGATTTGACCGAGCTTCATGGGAGGAGTTTAGCGTCAAGGAGACAGATGTGAAGAAATGCTAG |
| Transcript | >Pro_DTO377G3_2|g76.t1 ATGCCACCCAGCGCGTACTCCCCGGTCCTTGAGACCAGTCGCATCTTCTCTGCGCTGTGTGACCAGTCGGAACGC TTCGACTTACCACCCGAGGTTCTTGCGAACAAAGACCGCGTTTCGTTCTCTACCAGTCATAATGAAATCTACTTC CCAATTCCCTTTAAAGAGACCGAGACTCTCGCTGCCCTGAAGGGTATCGAAGGTTCCGTGGCTGCGGCCATTGCC GACCTGCGCTTCGGTGCTGGTGAGGAACCTCGGGGCATTCAAGTCAACCTCGAAGCTGCCACTGCCTTTGGATGC CAAGCGTACATGGCAAAGGTTGATGGTCTGTCAAAATTGGACCCAGCTGTGAAAACAAAGCTGAAGAACACGGAT TTGCTGGCTGCCCAATCCAACGGCTACCGACGTATGTCGGCGAATCTTTACAAGACTAAGAACCCAGGCGAATAC TTCCATATCCATGGCTCTCTGGAGGCTACAACCACCTTGAACATGATTGGGCTCGAGGGCCAACGACCAGACCTG ACTGATTATGAAGAAATCATCAAGGTCATCGAGAGCAAAGTACAGCAATACACAGCTGCGGAGCTTGAAGATATG AACAAAGAGAAACGCCAGGCCGGTGTGACTGCTTACAAACATGAGGACTTTATCAAGACTCCCCATGGAAAACTT AATGTCCAAGAGCCTGCATGGAAAGTCAGCAAATTGCCTGGTGATCTTCCTCCAACTCCTTTCCCAGCTAGACGC AACGGCAGCAAGAAGATCCTCGAGGGCATCAAAGTACTGGAGCTCTGCCGTATCATCGCAGGCCCGACTATTACC CGCATTCTAGCCGAATATGGTGCCGATGTTTTGAAGATAACCAGCCCAAACCTTTCCGATGTGCCGTTTTTCCAA GTCGATGGTAACATGGGCAAGATTGCAGCAGATCTTGATTTGAAGAGCGAGGCTGGACGAAAGGAGTTTGAGAAG CTCCTGGATGACGTGGATGTCATCGTAGACGGCTACCGTCCCGGAGCACTAGATAAGCTTGGCTACGGAGCAGAG GCCATGGCTGCGTTGGCCAAGAAGCGCGGCAAAGGCATTGTTTACGTGAATGAGAACTGCTTCGGATACGAGGGC GAGTGGGCTGGCCGCGCTGGATGGCAGCAGATCGCAGATTGCGTGACTGGAATCGCCTGGGCCCAAGGCCAGTTC ATGGGCCTCTCAACACCCGTTGTACCTCCTTACCCCATCTCCGACTACGGCACAGGCTGCATGGGCGCCATCGCC GCGCTGACTGGTCTCTATCACCGCGCGAAGACCGGTGGCTCCTACCACGGCAAAGCTTCGCTCATGCACTACGAC CTTCTCCTCTTTGCAATGGGCCAATACCCCGCTGATGTGCAGGAGGAGCTTCGTAAGGTGCAACCGCCTGAGTTC TTCAAGTTGCGTCACTGCGACAGTGTTGACCGCATCTCGTCGACCGTGCTGAAGGGCATGCAGGAGCGATTCCCG CACTTGTACAAGCCTGCCGGTTCTGAGTCGGAAGGTCGCAAGCCATTGACAGAGTTATGGACATCGCGCGCATAT GGTGCGGATATCGAGATTGTGAAGCCAGTGGTAGTAATTGGCGGGGTGGATAATCAGTTTGTGCGGTCTAGTCGT CCGAACGGATTTGACCGAGCTTCATGGGAGGAGTTTAGCGTCAAGGAGACAGATGTGAAGAAATGCTAG |
| Gene | >Pro_DTO377G3_2|g76.t1 ATGCCACCCAGCGCGTACTCCCCGGTCCTTGAGACCAGTCGCATCTTCTCTGCGCTGTGTGACCAGTCGGAACGC TTCGACTTACCACCCGAGGTTCTTGCGAACAAAGACCGCGTTTCGTTCTCTACCAGTCATAATGAAATCTACTTC CCAATTCCCTTTAAAGAGACCGAGACTCTCGCTGCCCTGAAGGGTATCGAAGGTTCCGTGGCTGCGGCCATTGCC GACCTGCGCTTCGGTGCTGGTGAGGAACCTCGGGGCATTCAAGTCAACCTCGAAGCTGCCACTGCCTTTGGATGC CAAGCGTACATGGCAAAGGTTGATGGTCTGTCAAAATTGGACCCAGCTGTGAAAACAAAGCTGAAGAGTATGTAT TTCTGTAGAGACTGATATATGGGATGACAAAACAATATTGACTGTAACAGACACGGATTTGCTGGCTGCCCAATC CAACGGCTACCGACGTATGTCGGCGAATCTTTACAAGACTAAGAACCCAGGCGAATACTTCCATATCCATGGCTC TCTGGAGGCTACAACCACCTTGAACATGATTGGGCTCGAGGGCCAACGACCAGACCTGACTGATTATGAAGAAAT CATCAAGGTCATCGAGAGCAAAGTACAGCAATACACAGCTGCGGAGCTTGAAGATATGAACAAAGAGAAACGCCA GGCCGGTGTGACTGCTTACAAACATGAGGACTTTATCAAGACTCCCCATGTAAGTGTTGCATGCTGTATCCGACC GCAACAAGCAAGCTGATCATTCGACAGGGAAAACTTAATGTCCAAGAGCCTGCATGGAAAGTCAGCAAATTGCCT GGTGATCTTCCTCCAACTCCTTTCCCAGCTAGACGCAACGGCAGCAAGAAGATCCTCGAGGGCATCAAAGTACTG GAGCTCTGCCGTATCATCGCAGGCCCGACTATTACCCGCATTCTAGCCGAATATGGTGCCGATGTTTTGAAGATA ACCAGCCCAAACCTTTCCGATGTGCCGTTTTTCCAAGTCGATGGTAACATGGGCAAGATTGCAGCAGATCTTGAT TTGAAGAGCGAGGCTGGACGAAAGGAGTTTGAGAAGCTCCTGGATGACGTGGATGTCATCGTAGACGGCTACCGT CCCGGAGCACTAGATAAGCTTGGCTACGGAGCAGAGGCCATGGCTGCGTTGGCCAAGAAGCGCGGCAAAGGCATT GTTTACGTGAATGAGAACTGCTTCGGATACGAGGGCGAGTGGGCTGGCCGCGCTGGATGGCAGCAGATCGCAGAT TGCGTAAGTTATCACATACTGTCTCTACTGTCCAGATCAAAACTGACCTCGGCTACAGGTGACTGGAATCGCCTG GGCCCAAGGCCAGTTCATGGGCCTCTCAACACCCGTTGTACCTCCTTACCCCATCTCCGACTACGGCACAGGCTG CATGGGCGCCATCGCCGCGCTGACTGGTCTCTATCACCGCGCGAAGACCGGTGGCTCCTACCACGGCAAAGCTTC GCTCATGCACTACGACCTTCTCCTCTTTGCAATGGGCCAATACCCCGCTGATGTGCAGGAGGAGCTTCGTAAGGT GCAACCGCCTGAGTTCTTCAAGTTGCGTCACTGCGACAGTGTTGACCGCATCTCGTCGACCGTGCTGAAGGGCAT GCAGGAGCGATTCCCGCACTTGTACAAGCCTGCCGGTTCTGAGTCGGAAGGTCGCAAGCCATTGACAGAGTTATG GACATCGCGCGCATATGGTGCGGATATCGAGATTGTGAAGCCAGTGGTAGTAATTGGCGGGGTGGATAATCAGTT TGTGCGGTCTAGTCGTCCGAACGGATTTGACCGAGCTTCATGGGAGGAGTTTAGCGTCAAGGAGACAGATGTGAA GAAATGCTAG |