© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7597.t1 |
| Gene name | |
| Location | scaffold_24:271139..271867 |
| Strand | + |
| Gene length (bp) | 728 |
| Transcript length (bp) | 579 |
| Coding sequence length (bp) | 579 |
| Protein length (aa) | 193 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00702 | Hydrolase | haloacid dehalogenase-like hydrolase | 4.4E-12 | 18 | 143 |
| PF13419 | HAD_2 | Haloacid dehalogenase-like hydrolase | 5.1E-10 | 30 | 147 |
| PF13242 | Hydrolase_like | HAD-hyrolase-like | 2.4E-05 | 105 | 156 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 17.25 | 5.56 | 28.95 |
| 5d_25C | Five days - 25 degrees Celsius | 17.23 | 5.51 | 28.96 |
| 7d_25C | Seven days - 25 degrees Celsius | 19.67 | 6.34 | 33.00 |
| 10d_25C | Ten days - 25 degrees Celsius | 12.63 | 3.39 | 21.86 |
| 7d_15C | Seven days - 15 degrees Celsius | 34.83 | 14.51 | 55.14 |
| 7d_30C | Seven days - 30 degrees Celsius | 25.82 | 9.79 | 41.84 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.997772 | no |
| 3d_25C | 7d_25C | 0.807151 | no |
| 3d_25C | 7d_15C | 0.046757 | yes |
| 3d_25C | 7d_30C | 0.304983 | no |
| 3d_25C | 10d_25C | 0.504569 | no |
| 5d_25C | 7d_25C | 0.803667 | no |
| 5d_25C | 7d_15C | 0.047876 | yes |
| 5d_25C | 7d_30C | 0.297205 | no |
| 5d_25C | 10d_25C | 0.502019 | no |
| 7d_25C | 7d_15C | 0.108295 | no |
| 7d_25C | 7d_30C | 0.525076 | no |
| 7d_25C | 10d_25C | 0.304520 | no |
| 7d_15C | 7d_30C | 0.426301 | no |
| 7d_15C | 10d_25C | 0.003197 | yes |
| 7d_30C | 10d_25C | 0.051079 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7597.t1 MFRQMREALGIDSSVDILHHIRQLPTEEQPTAVSKVQAVERRAMADQQPQPGLVLLMDYLESRGVRRALCTRNFE APVQNLIDNHLNGHVFLPIITRDTPNLLPKPDPAGILHIASEWGLDDGRNLIMVGDSIDDMTAGHMAGAATVLLL NEHNVHLKEHPHTDLCIKQLSDLIDVLEAGFVGTRENDEHGA* |
| Coding | >Pro_DTO377G3_2|g7597.t1 ATGTTCCGTCAGATGAGAGAAGCACTAGGAATCGACAGCTCCGTCGATATCCTCCACCACATCCGCCAACTCCCC ACCGAAGAACAACCCACAGCCGTATCGAAGGTGCAAGCAGTAGAGCGCCGAGCCATGGCCGACCAGCAGCCGCAG CCCGGCCTGGTTCTCCTAATGGACTACCTTGAATCCCGCGGCGTACGACGAGCGCTCTGCACACGGAACTTCGAA GCACCAGTCCAGAACCTGATTGACAATCATCTCAACGGTCATGTCTTCCTACCAATCATCACGCGGGACACGCCA AATCTCCTGCCCAAGCCTGATCCCGCCGGCATTCTGCATATTGCGAGTGAATGGGGTCTTGATGATGGTCGGAAT TTGATCATGGTTGGTGATAGCATTGATGATATGACGGCTGGGCATATGGCTGGCGCTGCGACGGTGTTGCTTTTG AATGAGCATAATGTGCATTTGAAGGAACATCCGCATACGGATCTTTGCATTAAGCAGCTATCTGATTTGATCGAT GTTCTGGAGGCAGGATTTGTCGGGACTAGAGAGAACGATGAGCATGGCGCGTGA |
| Transcript | >Pro_DTO377G3_2|g7597.t1 ATGTTCCGTCAGATGAGAGAAGCACTAGGAATCGACAGCTCCGTCGATATCCTCCACCACATCCGCCAACTCCCC ACCGAAGAACAACCCACAGCCGTATCGAAGGTGCAAGCAGTAGAGCGCCGAGCCATGGCCGACCAGCAGCCGCAG CCCGGCCTGGTTCTCCTAATGGACTACCTTGAATCCCGCGGCGTACGACGAGCGCTCTGCACACGGAACTTCGAA GCACCAGTCCAGAACCTGATTGACAATCATCTCAACGGTCATGTCTTCCTACCAATCATCACGCGGGACACGCCA AATCTCCTGCCCAAGCCTGATCCCGCCGGCATTCTGCATATTGCGAGTGAATGGGGTCTTGATGATGGTCGGAAT TTGATCATGGTTGGTGATAGCATTGATGATATGACGGCTGGGCATATGGCTGGCGCTGCGACGGTGTTGCTTTTG AATGAGCATAATGTGCATTTGAAGGAACATCCGCATACGGATCTTTGCATTAAGCAGCTATCTGATTTGATCGAT GTTCTGGAGGCAGGATTTGTCGGGACTAGAGAGAACGATGAGCATGGCGCGTGA |
| Gene | >Pro_DTO377G3_2|g7597.t1 ATGTTCCGTCAGATGAGGTATGCTCTACTGCCTGCGAGCCATTCAAACCCCTCTGTAACAAATATTCCACTATAG AGAAGCACTAGGAATCGACAGCTCCGTCGATATCCTCCACCACATCCGCCAACTCCCCACCGAAGAACAACCCAC AGCCGTATCGAAGGTGCAAGCAGTAGAGCGCCGAGCCATGGCCGACCAGCAGCCGCAGCCCGGCCTGGTTCTCCT AATGGACTACCTTGAATCCCGCGGCGTACGACGAGCGCTCTGCACACGGAACTTCGAGTACGTTGTAGTTATCAA CGCAACCTTCCACATGCATTCTAGATACGTACTGTAATGTGCACACAACGCTAACCTATATTCGCATCTTTAGAG CACCAGTCCAGAACCTGATTGACAATCATCTCAACGGTCATGTCTTCCTACCAATCATCACGCGGGACACGCCAA ATCTCCTGCCCAAGCCTGATCCCGCCGGCATTCTGCATATTGCGAGTGAATGGGGTCTTGATGATGGTCGGAATT TGATCATGGTTGGTGATAGCATTGATGATATGACGGCTGGGCATATGGCTGGCGCTGCGACGGTGTTGCTTTTGA ATGAGCATAATGTGCATTTGAAGGAACATCCGCATACGGATCTTTGCATTAAGCAGCTATCTGATTTGATCGATG TTCTGGAGGCAGGATTTGTCGGGACTAGAGAGAACGATGAGCATGGCGCGTGA |