© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7588.t1 |
| Gene name | |
| Location | scaffold_24:246309..248556 |
| Strand | - |
| Gene length (bp) | 2247 |
| Transcript length (bp) | 2247 |
| Coding sequence length (bp) | 2247 |
| Protein length (aa) | 749 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF06011 | TRP | Transient receptor potential (TRP) ion channel | 3.5E-167 | 166 | 612 |
| PF14558 | TRP_N | ML-like domain | 1.3E-36 | 24 | 161 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 333 | 355 | 22 |
| 2 | 382 | 401 | 19 |
| 3 | 416 | 433 | 17 |
| 4 | 474 | 496 | 22 |
| 5 | 506 | 525 | 19 |
| 6 | 532 | 551 | 19 |
| 7 | 561 | 594 | 33 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 125.32 | 75.54 | 175.11 |
| 5d_25C | Five days - 25 degrees Celsius | 56.96 | 32.76 | 81.16 |
| 7d_25C | Seven days - 25 degrees Celsius | 63.04 | 34.65 | 91.43 |
| 10d_25C | Ten days - 25 degrees Celsius | 27.80 | 14.70 | 40.90 |
| 7d_15C | Seven days - 15 degrees Celsius | 72.22 | 37.64 | 106.80 |
| 7d_30C | Seven days - 30 degrees Celsius | 63.82 | 35.43 | 92.22 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.002297 | yes |
| 3d_25C | 7d_15C | 0.017762 | yes |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.763961 | no |
| 5d_25C | 7d_15C | 0.393457 | no |
| 5d_25C | 7d_30C | 0.730170 | no |
| 5d_25C | 10d_25C | 0.002761 | yes |
| 7d_25C | 7d_15C | 0.685751 | no |
| 7d_25C | 7d_30C | 0.976137 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.717322 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7588.t1 MRVISLLTCFVAFLAPLASAVQLLESNALSVCMESSNFTATYFSVIFYPGNNSLVVGFDGVSYIEGKVIAEMTFT AYGYQAYQSTLNPCKISGMGMCPMSAGPMDLGPLSLDLPAGTSANIPGIAFSVPDLDAKVRIVIRTADTEEKIAC VEASLSNGKTVNQSGVSWTTAVISGLGLAASAITSGLGHSNTAAHVAANALSLFGFMQSQAIIGMTSVDMPPIVE AWTQNFQWSMGIIRVGFIQTIATWYQRSTGGTPSTVLSQLSDTSVEVLRRRKRALVDPAMNLMRRAVGPMIVKRG SGIVKRAETSQKLLVIRGIDRVGFRADMEDTNIFLTGLIFFAVFTCIVVIIVALFKGITELLVKHGKMKSDRFQD FRNGWKIVLRGILFRLTLIGFPQMSILCLWEFTQRDSPAEIVLAAVMLLSMLVSLGWASQKVIRLAKRSVTMHKN PAYILYSDPTCLNKWGFLYVQYRATAYYFVVPFLVYTLIKGMFIGLSQEAPVVQTVALVVLELGMLVAVCILRPW MDKKTNVFNISIAVINFINSIFLLVFSDVFDPPGMMIGVMGVIFFVYNAVFSLVLLILVLLASIYAVVSKNPDTR YQPMRDDRGSFIKSQTQLTTELDALGATARGDMKPGQYNNNNPFDDDSASISSGNGATVGRPMESTYSLHGSAAQ APRSPVDPSVPLFPSNASGHHNPPPGYDHYGRSPSPAPRSFDNTSPVGQSALSTTYRAQNSASPWQRGAGYDH* |
| Coding | >Pro_DTO377G3_2|g7588.t1 ATGCGGGTAATATCTCTTCTCACCTGCTTCGTCGCCTTTCTGGCGCCGCTAGCCTCTGCCGTCCAACTCCTTGAA TCCAATGCACTCAGCGTGTGCATGGAAAGTAGCAACTTCACGGCAACATATTTCAGCGTCATCTTCTACCCAGGA AATAACTCCCTCGTGGTCGGCTTCGATGGCGTCTCATACATCGAGGGTAAGGTTATTGCGGAGATGACCTTCACC GCATATGGCTACCAGGCATATCAGAGCACCCTTAATCCTTGTAAAATTAGTGGCATGGGTATGTGTCCCATGTCC GCTGGACCCATGGATTTGGGTCCACTTTCTCTCGACCTCCCAGCAGGCACTTCAGCCAATATCCCTGGTATCGCC TTCAGTGTGCCTGATCTCGACGCAAAAGTGCGGATTGTCATCAGGACAGCCGACACCGAAGAAAAGATTGCTTGT GTCGAGGCCTCACTTTCCAACGGCAAGACCGTTAATCAATCCGGAGTCTCGTGGACAACTGCTGTTATATCCGGG TTAGGTCTCGCTGCATCCGCTATCACCTCCGGCCTAGGGCATTCCAACACCGCAGCCCACGTTGCGGCAAATGCG CTCTCTCTTTTCGGATTCATGCAGTCCCAAGCGATTATTGGCATGACCTCCGTTGATATGCCCCCGATCGTGGAA GCTTGGACCCAGAACTTCCAATGGAGCATGGGTATCATCCGCGTGGGATTCATCCAGACGATTGCTACCTGGTAT CAGCGATCAACCGGTGGAACTCCATCGACAGTCCTATCACAGCTTTCGGATACTTCTGTGGAAGTCCTCAGGCGC CGTAAGCGTGCCTTGGTTGACCCGGCCATGAACCTCATGAGGAGAGCCGTGGGACCAATGATTGTCAAGCGAGGA AGTGGTATAGTCAAGAGAGCCGAGACAAGCCAGAAACTTCTTGTCATCCGAGGAATTGATCGTGTTGGATTCCGT GCGGACATGGAGGATACCAACATTTTCCTCACTGGCCTGATTTTCTTTGCGGTATTCACCTGCATTGTCGTCATC ATCGTTGCACTCTTCAAGGGAATTACTGAGTTACTTGTCAAGCATGGCAAAATGAAGAGCGACCGGTTCCAGGAC TTCCGCAATGGGTGGAAGATCGTACTGCGTGGTATCTTGTTCCGATTGACTCTCATCGGGTTTCCCCAGATGTCT ATCCTTTGCCTCTGGGAGTTCACCCAGCGTGACTCGCCGGCCGAGATTGTTTTGGCAGCGGTCATGCTCCTTTCC ATGCTCGTCTCTCTTGGTTGGGCCTCTCAGAAGGTCATCCGTTTGGCAAAGCGTTCAGTTACCATGCACAAGAAC CCGGCATATATTCTTTACTCCGACCCAACCTGTCTGAACAAGTGGGGTTTTTTGTATGTGCAGTACCGAGCAACG GCATACTACTTTGTCGTTCCGTTCCTCGTCTACACCTTGATCAAGGGTATGTTCATCGGTCTGAGCCAGGAAGCA CCGGTCGTTCAAACAGTGGCTTTGGTGGTCCTTGAGCTAGGCATGCTTGTTGCGGTCTGCATTCTCCGTCCTTGG ATGGATAAGAAGACCAACGTTTTCAACATCTCCATTGCGGTGATCAATTTCATCAACTCCATCTTCCTGCTCGTG TTCTCGGATGTGTTCGACCCACCCGGAATGATGATCGGTGTTATGGGTGTCATTTTCTTCGTTTACAATGCCGTG TTTTCTTTGGTCCTCTTGATCTTGGTCCTGCTCGCCTCGATATATGCCGTTGTGTCAAAGAATCCCGACACTCGT TACCAGCCTATGCGCGACGATCGTGGCTCGTTCATCAAGTCCCAAACCCAGCTCACCACTGAATTGGATGCCTTG GGTGCTACCGCACGTGGTGATATGAAGCCTGGACAATATAATAATAACAACCCATTCGACGACGATAGCGCTTCT ATCTCCAGTGGAAACGGTGCTACCGTCGGCCGCCCAATGGAATCGACCTACTCCCTGCACGGGTCTGCCGCCCAA GCGCCTCGGTCACCCGTTGACCCATCCGTGCCACTGTTCCCCAGCAACGCGTCAGGTCATCACAATCCTCCCCCC GGATACGACCATTACGGCCGGTCCCCTTCACCCGCGCCAAGGAGCTTTGATAACACCTCTCCTGTTGGCCAATCT GCTTTGTCAACGACATATCGAGCCCAGAACAGTGCCAGTCCTTGGCAACGAGGCGCTGGCTATGATCATTAA |
| Transcript | >Pro_DTO377G3_2|g7588.t1 ATGCGGGTAATATCTCTTCTCACCTGCTTCGTCGCCTTTCTGGCGCCGCTAGCCTCTGCCGTCCAACTCCTTGAA TCCAATGCACTCAGCGTGTGCATGGAAAGTAGCAACTTCACGGCAACATATTTCAGCGTCATCTTCTACCCAGGA AATAACTCCCTCGTGGTCGGCTTCGATGGCGTCTCATACATCGAGGGTAAGGTTATTGCGGAGATGACCTTCACC GCATATGGCTACCAGGCATATCAGAGCACCCTTAATCCTTGTAAAATTAGTGGCATGGGTATGTGTCCCATGTCC GCTGGACCCATGGATTTGGGTCCACTTTCTCTCGACCTCCCAGCAGGCACTTCAGCCAATATCCCTGGTATCGCC TTCAGTGTGCCTGATCTCGACGCAAAAGTGCGGATTGTCATCAGGACAGCCGACACCGAAGAAAAGATTGCTTGT GTCGAGGCCTCACTTTCCAACGGCAAGACCGTTAATCAATCCGGAGTCTCGTGGACAACTGCTGTTATATCCGGG TTAGGTCTCGCTGCATCCGCTATCACCTCCGGCCTAGGGCATTCCAACACCGCAGCCCACGTTGCGGCAAATGCG CTCTCTCTTTTCGGATTCATGCAGTCCCAAGCGATTATTGGCATGACCTCCGTTGATATGCCCCCGATCGTGGAA GCTTGGACCCAGAACTTCCAATGGAGCATGGGTATCATCCGCGTGGGATTCATCCAGACGATTGCTACCTGGTAT CAGCGATCAACCGGTGGAACTCCATCGACAGTCCTATCACAGCTTTCGGATACTTCTGTGGAAGTCCTCAGGCGC CGTAAGCGTGCCTTGGTTGACCCGGCCATGAACCTCATGAGGAGAGCCGTGGGACCAATGATTGTCAAGCGAGGA AGTGGTATAGTCAAGAGAGCCGAGACAAGCCAGAAACTTCTTGTCATCCGAGGAATTGATCGTGTTGGATTCCGT GCGGACATGGAGGATACCAACATTTTCCTCACTGGCCTGATTTTCTTTGCGGTATTCACCTGCATTGTCGTCATC ATCGTTGCACTCTTCAAGGGAATTACTGAGTTACTTGTCAAGCATGGCAAAATGAAGAGCGACCGGTTCCAGGAC TTCCGCAATGGGTGGAAGATCGTACTGCGTGGTATCTTGTTCCGATTGACTCTCATCGGGTTTCCCCAGATGTCT ATCCTTTGCCTCTGGGAGTTCACCCAGCGTGACTCGCCGGCCGAGATTGTTTTGGCAGCGGTCATGCTCCTTTCC ATGCTCGTCTCTCTTGGTTGGGCCTCTCAGAAGGTCATCCGTTTGGCAAAGCGTTCAGTTACCATGCACAAGAAC CCGGCATATATTCTTTACTCCGACCCAACCTGTCTGAACAAGTGGGGTTTTTTGTATGTGCAGTACCGAGCAACG GCATACTACTTTGTCGTTCCGTTCCTCGTCTACACCTTGATCAAGGGTATGTTCATCGGTCTGAGCCAGGAAGCA CCGGTCGTTCAAACAGTGGCTTTGGTGGTCCTTGAGCTAGGCATGCTTGTTGCGGTCTGCATTCTCCGTCCTTGG ATGGATAAGAAGACCAACGTTTTCAACATCTCCATTGCGGTGATCAATTTCATCAACTCCATCTTCCTGCTCGTG TTCTCGGATGTGTTCGACCCACCCGGAATGATGATCGGTGTTATGGGTGTCATTTTCTTCGTTTACAATGCCGTG TTTTCTTTGGTCCTCTTGATCTTGGTCCTGCTCGCCTCGATATATGCCGTTGTGTCAAAGAATCCCGACACTCGT TACCAGCCTATGCGCGACGATCGTGGCTCGTTCATCAAGTCCCAAACCCAGCTCACCACTGAATTGGATGCCTTG GGTGCTACCGCACGTGGTGATATGAAGCCTGGACAATATAATAATAACAACCCATTCGACGACGATAGCGCTTCT ATCTCCAGTGGAAACGGTGCTACCGTCGGCCGCCCAATGGAATCGACCTACTCCCTGCACGGGTCTGCCGCCCAA GCGCCTCGGTCACCCGTTGACCCATCCGTGCCACTGTTCCCCAGCAACGCGTCAGGTCATCACAATCCTCCCCCC GGATACGACCATTACGGCCGGTCCCCTTCACCCGCGCCAAGGAGCTTTGATAACACCTCTCCTGTTGGCCAATCT GCTTTGTCAACGACATATCGAGCCCAGAACAGTGCCAGTCCTTGGCAACGAGGCGCTGGCTATGATCATTAA |
| Gene | >Pro_DTO377G3_2|g7588.t1 ATGCGGGTAATATCTCTTCTCACCTGCTTCGTCGCCTTTCTGGCGCCGCTAGCCTCTGCCGTCCAACTCCTTGAA TCCAATGCACTCAGCGTGTGCATGGAAAGTAGCAACTTCACGGCAACATATTTCAGCGTCATCTTCTACCCAGGA AATAACTCCCTCGTGGTCGGCTTCGATGGCGTCTCATACATCGAGGGTAAGGTTATTGCGGAGATGACCTTCACC GCATATGGCTACCAGGCATATCAGAGCACCCTTAATCCTTGTAAAATTAGTGGCATGGGTATGTGTCCCATGTCC GCTGGACCCATGGATTTGGGTCCACTTTCTCTCGACCTCCCAGCAGGCACTTCAGCCAATATCCCTGGTATCGCC TTCAGTGTGCCTGATCTCGACGCAAAAGTGCGGATTGTCATCAGGACAGCCGACACCGAAGAAAAGATTGCTTGT GTCGAGGCCTCACTTTCCAACGGCAAGACCGTTAATCAATCCGGAGTCTCGTGGACAACTGCTGTTATATCCGGG TTAGGTCTCGCTGCATCCGCTATCACCTCCGGCCTAGGGCATTCCAACACCGCAGCCCACGTTGCGGCAAATGCG CTCTCTCTTTTCGGATTCATGCAGTCCCAAGCGATTATTGGCATGACCTCCGTTGATATGCCCCCGATCGTGGAA GCTTGGACCCAGAACTTCCAATGGAGCATGGGTATCATCCGCGTGGGATTCATCCAGACGATTGCTACCTGGTAT CAGCGATCAACCGGTGGAACTCCATCGACAGTCCTATCACAGCTTTCGGATACTTCTGTGGAAGTCCTCAGGCGC CGTAAGCGTGCCTTGGTTGACCCGGCCATGAACCTCATGAGGAGAGCCGTGGGACCAATGATTGTCAAGCGAGGA AGTGGTATAGTCAAGAGAGCCGAGACAAGCCAGAAACTTCTTGTCATCCGAGGAATTGATCGTGTTGGATTCCGT GCGGACATGGAGGATACCAACATTTTCCTCACTGGCCTGATTTTCTTTGCGGTATTCACCTGCATTGTCGTCATC ATCGTTGCACTCTTCAAGGGAATTACTGAGTTACTTGTCAAGCATGGCAAAATGAAGAGCGACCGGTTCCAGGAC TTCCGCAATGGGTGGAAGATCGTACTGCGTGGTATCTTGTTCCGATTGACTCTCATCGGGTTTCCCCAGATGTCT ATCCTTTGCCTCTGGGAGTTCACCCAGCGTGACTCGCCGGCCGAGATTGTTTTGGCAGCGGTCATGCTCCTTTCC ATGCTCGTCTCTCTTGGTTGGGCCTCTCAGAAGGTCATCCGTTTGGCAAAGCGTTCAGTTACCATGCACAAGAAC CCGGCATATATTCTTTACTCCGACCCAACCTGTCTGAACAAGTGGGGTTTTTTGTATGTGCAGTACCGAGCAACG GCATACTACTTTGTCGTTCCGTTCCTCGTCTACACCTTGATCAAGGGTATGTTCATCGGTCTGAGCCAGGAAGCA CCGGTCGTTCAAACAGTGGCTTTGGTGGTCCTTGAGCTAGGCATGCTTGTTGCGGTCTGCATTCTCCGTCCTTGG ATGGATAAGAAGACCAACGTTTTCAACATCTCCATTGCGGTGATCAATTTCATCAACTCCATCTTCCTGCTCGTG TTCTCGGATGTGTTCGACCCACCCGGAATGATGATCGGTGTTATGGGTGTCATTTTCTTCGTTTACAATGCCGTG TTTTCTTTGGTCCTCTTGATCTTGGTCCTGCTCGCCTCGATATATGCCGTTGTGTCAAAGAATCCCGACACTCGT TACCAGCCTATGCGCGACGATCGTGGCTCGTTCATCAAGTCCCAAACCCAGCTCACCACTGAATTGGATGCCTTG GGTGCTACCGCACGTGGTGATATGAAGCCTGGACAATATAATAATAACAACCCATTCGACGACGATAGCGCTTCT ATCTCCAGTGGAAACGGTGCTACCGTCGGCCGCCCAATGGAATCGACCTACTCCCTGCACGGGTCTGCCGCCCAA GCGCCTCGGTCACCCGTTGACCCATCCGTGCCACTGTTCCCCAGCAACGCGTCAGGTCATCACAATCCTCCCCCC GGATACGACCATTACGGCCGGTCCCCTTCACCCGCGCCAAGGAGCTTTGATAACACCTCTCCTGTTGGCCAATCT GCTTTGTCAACGACATATCGAGCCCAGAACAGTGCCAGTCCTTGGCAACGAGGCGCTGGCTATGATCATTAA |