© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7574.t1 |
| Gene name | |
| Location | scaffold_24:204833..206246 |
| Strand | + |
| Gene length (bp) | 1413 |
| Transcript length (bp) | 1302 |
| Coding sequence length (bp) | 1302 |
| Protein length (aa) | 434 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00026 | Asp | Eukaryotic aspartyl protease | 6.1E-70 | 89 | 415 |
| PF14543 | TAXi_N | Xylanase inhibitor N-terminal | 2.0E-07 | 89 | 144 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 66 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 1.12 | 0.01 | 2.24 |
| 5d_25C | Five days - 25 degrees Celsius | 0.50 | 0.00 | 1.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.71 | 0.00 | 1.49 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.44 | 0.00 | 0.99 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.93 | 0.00 | 2.07 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.96 | 0.31 | 3.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.235533 | no |
| 3d_25C | 7d_25C | 0.522593 | no |
| 3d_25C | 7d_15C | 0.838282 | no |
| 3d_25C | 7d_30C | 0.349186 | no |
| 3d_25C | 10d_25C | 0.150086 | no |
| 5d_25C | 7d_25C | 0.672079 | no |
| 5d_25C | 7d_15C | 0.441600 | no |
| 5d_25C | 7d_30C | 0.032181 | yes |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 0.770693 | no |
| 7d_25C | 7d_30C | 0.076091 | no |
| 7d_25C | 10d_25C | 0.542284 | no |
| 7d_15C | 7d_30C | 0.260031 | no |
| 7d_15C | 10d_25C | 0.330330 | no |
| 7d_30C | 10d_25C | 0.016634 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7574.t1 MPRINLIANPHYQKSGTKSYLYAMRKYHFTPTKEGPYFLGTRMVQSGRQYTNKPVGGRARLQQVLQKKDATSDQV GQVSANDVQNDSMYLAQVAIGTPAQTLSLDFDTGSADLWVWSTELPSKTLSAYKNHTIFDPTKSSTYKEKEGSSW QIKYGDGSSASGSVGNDNVNIGGLVVKGQAVEIADLLSEQFEQGAGDGLLGLAFGNINTVKPEPVSTPVENMISQ TDIPKSAELFTAKLGSWRDSDEPDKGESFYTFGYIDQDTVKAAEAEIYYTPVDNSQGFWMFDSASATVNGKSIAR AGNKAIADTGTTLALVDDETCQAIYDAIPGAEYDNESQGWIFPSNTPANKLPVISFAVGDTQFVVQKEDLGFAEA KSGYVYGGIQSRGTMTMDILGDTFLKAIYAVFDAGNLRFGAVQRKELHQNLSVPPESS* |
| Coding | >Pro_DTO377G3_2|g7574.t1 ATGCCTAGAATCAACCTCATCGCGAACCCGCACTACCAGAAGTCCGGCACGAAGTCGTACTTGTACGCTATGCGC AAGTATCACTTCACGCCGACTAAGGAAGGCCCGTATTTTCTCGGTACCAGGATGGTGCAAAGTGGCCGACAGTAC ACCAATAAGCCCGTGGGAGGCCGTGCTCGGTTGCAGCAGGTGCTGCAGAAGAAGGATGCTACTAGCGATCAGGTT GGGCAAGTGAGTGCCAACGACGTGCAGAATGACTCGATGTATCTTGCACAAGTTGCTATTGGCACACCTGCCCAG ACGCTCAGTTTGGACTTCGATACCGGATCTGCGGATCTGTGGGTCTGGTCCACGGAGTTGCCGTCTAAGACTTTG TCGGCGTACAAAAACCATACAATCTTCGATCCGACCAAGTCCAGCACGTATAAAGAGAAAGAAGGCTCATCGTGG CAGATCAAGTACGGTGATGGCTCTTCTGCCTCTGGCTCGGTCGGCAACGATAATGTCAACATCGGTGGGCTGGTG GTCAAAGGCCAGGCCGTTGAGATCGCTGATTTATTGTCCGAGCAATTTGAGCAAGGTGCTGGGGATGGGTTGCTG GGACTTGCGTTCGGTAATATCAATACCGTCAAGCCCGAGCCCGTCAGCACGCCTGTGGAGAATATGATTTCGCAG ACCGATATCCCGAAGTCAGCCGAGCTCTTCACCGCGAAATTAGGGTCGTGGAGAGACTCTGATGAGCCGGATAAG GGCGAGTCATTCTATACTTTTGGTTATATTGATCAGGACACGGTGAAGGCCGCCGAGGCAGAGATCTACTACACT CCCGTCGATAACAGCCAGGGATTCTGGATGTTCGATTCTGCCTCGGCGACAGTGAATGGGAAGTCGATTGCCCGG GCTGGAAACAAGGCTATTGCGGATACAGGGACTACCTTGGCGTTGGTGGATGATGAGACTTGTCAGGCCATTTAT GATGCTATCCCGGGGGCAGAGTATGACAATGAGAGCCAGGGATGGATCTTCCCATCCAACACACCGGCTAATAAG TTGCCTGTTATATCTTTTGCTGTTGGTGATACGCAGTTTGTTGTGCAAAAGGAAGATCTTGGATTTGCTGAGGCT AAGTCTGGTTATGTCTATGGAGGCATCCAGAGTCGTGGTACTATGACCATGGACATCCTGGGAGATACCTTCCTG AAGGCTATCTATGCAGTCTTCGATGCCGGCAATCTTCGCTTCGGTGCTGTGCAGCGAAAGGAGCTGCATCAGAAT CTCTCTGTGCCTCCGGAGTCAAGCTAG |
| Transcript | >Pro_DTO377G3_2|g7574.t1 ATGCCTAGAATCAACCTCATCGCGAACCCGCACTACCAGAAGTCCGGCACGAAGTCGTACTTGTACGCTATGCGC AAGTATCACTTCACGCCGACTAAGGAAGGCCCGTATTTTCTCGGTACCAGGATGGTGCAAAGTGGCCGACAGTAC ACCAATAAGCCCGTGGGAGGCCGTGCTCGGTTGCAGCAGGTGCTGCAGAAGAAGGATGCTACTAGCGATCAGGTT GGGCAAGTGAGTGCCAACGACGTGCAGAATGACTCGATGTATCTTGCACAAGTTGCTATTGGCACACCTGCCCAG ACGCTCAGTTTGGACTTCGATACCGGATCTGCGGATCTGTGGGTCTGGTCCACGGAGTTGCCGTCTAAGACTTTG TCGGCGTACAAAAACCATACAATCTTCGATCCGACCAAGTCCAGCACGTATAAAGAGAAAGAAGGCTCATCGTGG CAGATCAAGTACGGTGATGGCTCTTCTGCCTCTGGCTCGGTCGGCAACGATAATGTCAACATCGGTGGGCTGGTG GTCAAAGGCCAGGCCGTTGAGATCGCTGATTTATTGTCCGAGCAATTTGAGCAAGGTGCTGGGGATGGGTTGCTG GGACTTGCGTTCGGTAATATCAATACCGTCAAGCCCGAGCCCGTCAGCACGCCTGTGGAGAATATGATTTCGCAG ACCGATATCCCGAAGTCAGCCGAGCTCTTCACCGCGAAATTAGGGTCGTGGAGAGACTCTGATGAGCCGGATAAG GGCGAGTCATTCTATACTTTTGGTTATATTGATCAGGACACGGTGAAGGCCGCCGAGGCAGAGATCTACTACACT CCCGTCGATAACAGCCAGGGATTCTGGATGTTCGATTCTGCCTCGGCGACAGTGAATGGGAAGTCGATTGCCCGG GCTGGAAACAAGGCTATTGCGGATACAGGGACTACCTTGGCGTTGGTGGATGATGAGACTTGTCAGGCCATTTAT GATGCTATCCCGGGGGCAGAGTATGACAATGAGAGCCAGGGATGGATCTTCCCATCCAACACACCGGCTAATAAG TTGCCTGTTATATCTTTTGCTGTTGGTGATACGCAGTTTGTTGTGCAAAAGGAAGATCTTGGATTTGCTGAGGCT AAGTCTGGTTATGTCTATGGAGGCATCCAGAGTCGTGGTACTATGACCATGGACATCCTGGGAGATACCTTCCTG AAGGCTATCTATGCAGTCTTCGATGCCGGCAATCTTCGCTTCGGTGCTGTGCAGCGAAAGGAGCTGCATCAGAAT CTCTCTGTGCCTCCGGAGTCAAGCTAG |
| Gene | >Pro_DTO377G3_2|g7574.t1 ATGCCTAGAATCAACCTCATCGCGAACCCGCACTACCAGAAGTCCGGCACGAAGTCGTACTTGTACGCTATGCGC AAGTATCACTTCACGCCGACTAAGGAAGGCCCGTATTTTCTCGGTACCAGGATGGTGCAAAGTGGCCGACAGTAC ACCAATAAGCCCGTGGGAGGCCGTGCTCGGTTGCAGCAGGTGCTGCAGAAGAAGGATGCTACTAGCGATCAGGTT GGGCAAGTGAGTGCCAACGACGTGCAGAATGACTCGATGTATCTTGCACAAGTTGCTATTGGCACACCTGCCCAG ACGCTCAGTTTGGACTTCGATACCGGATCTGCGGATCTGTGGGTAAGTGGATTTCTTTCGCTCTTCTCCGTGCGA TATGAACGTTGCTAAGATTGTCTAGGTCTGGTCCACGGAGTTGCCGTCTAAGACTTTGTCGGCGTACAAAAACCA TACAATCTTCGATCCGACCAAGTCCAGCACGTATAAAGAGAAAGAAGGCTCATCGTGGCAGATCAAGTACGGTGA TGGCTCTTCTGCCTCTGGCTCGGTCGGCAACGATAATGTCAACATCGGTGGGCTGGTGGTCAAAGGCCAGGCCGT TGAGATCGCTGATTTATTGTCCGAGCAATTTGAGCAAGGTGCTGGGGATGGGTTGCTGGGACTTGCGTTCGGTAA TATCAATACCGTCAAGCCCGAGCCCGTCAGCACGCCTGTGGAGAATATGATTTCGCAGACCGATATCCCGAAGTC AGCCGAGCTCTTCACCGCGAAATTAGGGTCGTGGAGAGACTCTGATGAGCCGGATAAGGGCGAGTCATTCTATAC TTTTGGTTATATTGATCAGGACACGGTGAAGGCCGCCGAGGCAGAGATCTACTACACTCCCGTCGATAACAGCCA GGGATTCTGGATGTTCGATTCTGCCTCGGCGACAGTGAATGGGAAGTCGATTGCCCGGGCTGGAAACAAGGCTAT TGCGGATACAGGGACTACCTTGGCGTTGGTGGATGATGAGACTTGTCAGGCCATTTATGATGCTATCCCGGGGGC AGAGTATGACAATGAGAGCCAGGGATGGATCTTCCCATCCAACACACCGGCTAATAAGTTGCCTGTTATATCTTT TGCTGTTGGTGATACGCAGTTTGTTGTGCAAAAGGAAGATCTTGGATTTGCTGAGGCTAAGTCTGGTTATGTCTA TGGAGGCATCCAGAGTCGTGGTACTATGACCATGGACATCCTGGGAGATACCTTCCTGAAGGCTATCTATGCAGT GAGTGATATATTCTTGGAGTTCACAATCGCACAAGCTAACGATAATTACAGGTCTTCGATGCCGGCAATCTTCGC TTCGGTGCTGTGCAGCGAAAGGAGCTGCATCAGAATCTCTCTGTGCCTCCGGAGTCAAGCTAG |