© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7550.t1 |
| Gene name | |
| Location | scaffold_24:125776..127017 |
| Strand | + |
| Gene length (bp) | 1241 |
| Transcript length (bp) | 1092 |
| Coding sequence length (bp) | 1092 |
| Protein length (aa) | 364 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF10176 | DUF2370 | Protein of unknown function (DUF2370) | 5.8E-92 | 145 | 346 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0030001 | metal ion transport | Yes |
| GO:0007034 | vacuolar transport | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051649 | establishment of localization in cell | No |
| GO:0051641 | cellular localization | No |
| GO:0046907 | intracellular transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0051234 | establishment of localization | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 70 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 210 | 232 | 22 |
| 2 | 302 | 324 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 137.96 | 84.59 | 191.34 |
| 5d_25C | Five days - 25 degrees Celsius | 190.97 | 116.50 | 265.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 235.68 | 142.05 | 329.30 |
| 10d_25C | Ten days - 25 degrees Celsius | 416.05 | 242.72 | 589.39 |
| 7d_15C | Seven days - 15 degrees Celsius | 159.36 | 97.68 | 221.04 |
| 7d_30C | Seven days - 30 degrees Celsius | 196.66 | 119.70 | 273.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.131638 | no |
| 3d_25C | 7d_25C | 0.009446 | yes |
| 3d_25C | 7d_15C | 0.573334 | no |
| 3d_25C | 7d_30C | 0.092792 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.395460 | no |
| 5d_25C | 7d_15C | 0.470181 | no |
| 5d_25C | 7d_30C | 0.932814 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.065810 | no |
| 7d_25C | 7d_30C | 0.478789 | no |
| 7d_25C | 10d_25C | 0.004450 | yes |
| 7d_15C | 7d_30C | 0.385380 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7550.t1 MSSQRYSRVNAQDEEEGPHSYPLNARPEHSNSSPSSFRSGSRSSSRSSRRLLHHDPQHDDDEQTLADAFGDEDGS DDDNEPDDRQRLMRADSDFRAPPDNGPTTTASSSDSRGDPQDQIQSGLLRRPTLLPSFTTPASGGSRQIASSNDG VFANLAAKPERGEKNDDLPPSYEEAAADATPPYWETTIVAPGISSDEVYVDGLPVGSVFSFIWNAMISMSFQLVG FLLTYLLHTTHAAKNGSRAGLGLTLVQYGFYMKGGSSDSSGSEGGGSEYVPPPDPNSHNFDPNSVGEGGGNGGNG AISGISTSEWISYILMIVGWFILIRAVSDFLRARRHEQLVLQSPDRGLGVPVIAEGERSETVV* |
| Coding | >Pro_DTO377G3_2|g7550.t1 ATGAGCTCGCAGCGCTATTCACGGGTGAATGCCCAGGATGAAGAGGAAGGACCACATTCCTATCCGCTGAACGCG CGACCTGAACATAGCAACTCTTCACCTTCGTCTTTCCGTTCCGGATCCCGCTCGTCGTCACGATCGTCAAGGCGG CTATTACACCACGATCCGCAACACGACGATGACGAACAGACACTCGCCGATGCTTTTGGCGACGAAGACGGGTCC GATGATGATAATGAGCCGGATGACCGACAGCGCTTGATGCGAGCAGACTCCGACTTCCGTGCTCCCCCGGATAAC GGCCCTACCACCACGGCCTCTTCGTCGGACTCGAGAGGCGATCCGCAGGATCAGATTCAATCAGGGCTTCTCAGG CGACCGACGCTATTACCAAGTTTTACGACCCCGGCTTCGGGAGGGAGTCGGCAGATCGCCTCATCGAATGATGGA GTCTTTGCCAATCTTGCTGCCAAGCCTGAACGGGGTGAGAAGAATGATGATCTTCCTCCTTCATACGAAGAAGCC GCAGCTGATGCGACACCGCCATATTGGGAGACCACCATTGTAGCTCCTGGTATCTCGTCAGACGAGGTCTATGTC GATGGATTGCCTGTTGGATCTGTTTTCTCATTTATTTGGAACGCCATGATTTCAATGTCATTCCAGCTCGTTGGC TTCTTGCTGACCTATCTTCTTCACACCACCCATGCCGCAAAGAACGGCAGCCGAGCGGGTCTCGGTCTTACTCTT GTTCAATACGGCTTCTACATGAAAGGTGGCAGCAGCGACAGTTCCGGCTCCGAGGGTGGAGGCTCCGAATATGTC CCTCCACCTGACCCCAACAGCCACAACTTCGACCCTAATTCGGTTGGTGAGGGTGGGGGTAATGGAGGGAACGGC GCCATCTCTGGCATCAGCACCAGTGAATGGATTTCATATATTCTTATGATTGTTGGCTGGTTCATCTTAATCCGT GCGGTCAGTGATTTCCTGCGGGCACGACGTCATGAACAGCTTGTTTTGCAGAGCCCGGATCGTGGCTTGGGTGTA CCAGTCATTGCAGAGGGCGAACGATCCGAGACTGTTGTCTAA |
| Transcript | >Pro_DTO377G3_2|g7550.t1 ATGAGCTCGCAGCGCTATTCACGGGTGAATGCCCAGGATGAAGAGGAAGGACCACATTCCTATCCGCTGAACGCG CGACCTGAACATAGCAACTCTTCACCTTCGTCTTTCCGTTCCGGATCCCGCTCGTCGTCACGATCGTCAAGGCGG CTATTACACCACGATCCGCAACACGACGATGACGAACAGACACTCGCCGATGCTTTTGGCGACGAAGACGGGTCC GATGATGATAATGAGCCGGATGACCGACAGCGCTTGATGCGAGCAGACTCCGACTTCCGTGCTCCCCCGGATAAC GGCCCTACCACCACGGCCTCTTCGTCGGACTCGAGAGGCGATCCGCAGGATCAGATTCAATCAGGGCTTCTCAGG CGACCGACGCTATTACCAAGTTTTACGACCCCGGCTTCGGGAGGGAGTCGGCAGATCGCCTCATCGAATGATGGA GTCTTTGCCAATCTTGCTGCCAAGCCTGAACGGGGTGAGAAGAATGATGATCTTCCTCCTTCATACGAAGAAGCC GCAGCTGATGCGACACCGCCATATTGGGAGACCACCATTGTAGCTCCTGGTATCTCGTCAGACGAGGTCTATGTC GATGGATTGCCTGTTGGATCTGTTTTCTCATTTATTTGGAACGCCATGATTTCAATGTCATTCCAGCTCGTTGGC TTCTTGCTGACCTATCTTCTTCACACCACCCATGCCGCAAAGAACGGCAGCCGAGCGGGTCTCGGTCTTACTCTT GTTCAATACGGCTTCTACATGAAAGGTGGCAGCAGCGACAGTTCCGGCTCCGAGGGTGGAGGCTCCGAATATGTC CCTCCACCTGACCCCAACAGCCACAACTTCGACCCTAATTCGGTTGGTGAGGGTGGGGGTAATGGAGGGAACGGC GCCATCTCTGGCATCAGCACCAGTGAATGGATTTCATATATTCTTATGATTGTTGGCTGGTTCATCTTAATCCGT GCGGTCAGTGATTTCCTGCGGGCACGACGTCATGAACAGCTTGTTTTGCAGAGCCCGGATCGTGGCTTGGGTGTA CCAGTCATTGCAGAGGGCGAACGATCCGAGACTGTTGTCTAA |
| Gene | >Pro_DTO377G3_2|g7550.t1 ATGAGCTCGCAGCGCTATTCACGGGTACCCAATCCCCCTCCCCGCTGATCCCCTATCAGAACAAGCCCCTTGGAT GGGATCCCTCGGCAACATACTGACCGCGACTGTCTAGGTGAATGCCCAGGATGAAGAGGAAGGACCACATTCCTA TCCGCTGAACGCGCGACCTGAACATAGCAACTCTTCACCTTCGTCTTTCCGTTCCGGATCCCGCTCGTCGTCACG ATCGTCAAGGCGGCTATTACACCACGATCCGCAACACGACGATGACGAACAGACACTCGCCGATGCTTTTGGCGA CGAAGACGGGTCCGATGATGATAATGAGCCGGATGACCGACAGCGCTTGATGCGAGCAGACTCCGACTTCCGTGC TCCCCCGGATAACGGCCCTACCACCACGGCCTCTTCGTCGGACTCGAGAGGCGATCCGCAGGATCAGATTCAATC AGGGCTTCTCAGGCGACCGACGCTATTACCAAGTTTTACGACCCCGGCTTCGGGAGGGAGTCGGCAGATCGCCTC ATCGAATGATGGAGTCTTTGCCAATCTTGCTGCCAAGCCTGAACGGGGTGAGAAGAATGATGATCTTCCTCCTGT AAGTTGATCATTGATATTTTTGACCCAAAAAGAAAGACTTATTTACTGATATCTTATAGTCATACGAAGAAGCCG CAGCTGATGCGACACCGCCATATTGGGAGACCACCATTGTAGCTCCTGGTATCTCGTCAGACGAGGTCTATGTCG ATGGATTGCCTGTTGGATCTGTTTTCTCATTTATTTGGAACGCCATGATTTCAATGTCATTCCAGCTCGTTGGCT TCTTGCTGACCTATCTTCTTCACACCACCCATGCCGCAAAGAACGGCAGCCGAGCGGGTCTCGGTCTTACTCTTG TTCAATACGGCTTCTACATGAAAGGTGGCAGCAGCGACAGTTCCGGCTCCGAGGGTGGAGGCTCCGAATATGTCC CTCCACCTGACCCCAACAGCCACAACTTCGACCCTAATTCGGTTGGTGAGGGTGGGGGTAATGGAGGGAACGGCG CCATCTCTGGCATCAGCACCAGTGAATGGATTTCATATATTCTTATGATTGTTGGCTGGTTCATCTTAATCCGTG CGGTCAGTGATTTCCTGCGGGCACGACGTCATGAACAGCTTGTTTTGCAGAGCCCGGATCGTGGCTTGGGTGTAC CAGTCATTGCAGAGGGCGAACGATCCGAGACTGTTGTCTAA |