Protein ID | Pro_DTO377G3_2|g7539.t1 |
Gene name | |
Location | scaffold_24:94612..97506 |
Strand | + |
Gene length (bp) | 2894 |
Transcript length (bp) | 2835 |
Coding sequence length (bp) | 2835 |
Protein length (aa) | 945 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04109 | ATG9 | Autophagy protein ATG9 | 1.7E-211 | 206 | 695 |
GO Term | Description | Terminal node |
---|---|---|
GO:0006914 | autophagy | Yes |
GO:0008150 | biological_process | No |
GO:0061919 | process utilizing autophagic mechanism | No |
GO:0009056 | catabolic process | No |
GO:0009987 | cellular process | No |
GO:0008152 | metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0044248 | cellular catabolic process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 17 | 0.45 |
Domain # | Start | End | Length |
---|---|---|---|
1 | 233 | 255 | 22 |
2 | 286 | 305 | 19 |
3 | 456 | 478 | 22 |
4 | 543 | 561 | 18 |
5 | 576 | 595 | 19 |
6 | 643 | 665 | 22 |
Expression values
Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
---|---|---|---|---|
3d_25C | Three days - 25 degrees Celsius | 47.33 | 29.04 | 65.62 |
5d_25C | Five days - 25 degrees Celsius | 74.79 | 45.31 | 104.28 |
7d_25C | Seven days - 25 degrees Celsius | 81.20 | 48.94 | 113.46 |
10d_25C | Ten days - 25 degrees Celsius | 125.84 | 73.93 | 177.75 |
7d_15C | Seven days - 15 degrees Celsius | 87.64 | 52.24 | 123.03 |
7d_30C | Seven days - 30 degrees Celsius | 71.75 | 43.66 | 99.85 |
Differential expression
Label1 | Label2 | Q-value | Significant difference |
---|---|---|---|
3d_25C | 5d_25C | 0.023188 | yes |
3d_25C | 7d_25C | 0.004450 | yes |
3d_25C | 7d_15C | 0.001804 | yes |
3d_25C | 7d_30C | 0.044390 | yes |
3d_25C | 10d_25C | 0.000700 | yes |
5d_25C | 7d_25C | 0.782638 | no |
5d_25C | 7d_15C | 0.546715 | no |
5d_25C | 7d_30C | 0.898437 | no |
5d_25C | 10d_25C | 0.010411 | yes |
7d_25C | 7d_15C | 0.804485 | no |
7d_25C | 7d_30C | 0.655107 | no |
7d_25C | 10d_25C | 0.043201 | yes |
7d_15C | 7d_30C | 0.429801 | no |
7d_15C | 10d_25C | 0.105675 | no |
7d_30C | 10d_25C | 0.005235 | yes |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g7539.t1 MMSSNILSRFLPPTGSRSVYETIRQHDVGSEYSDLEERAGLVIEDQQEQFSDRELEDALADAQDSEIISPSTALL GQARSGKAPEERASPSGTRRRKSSRPRWMPQESPLGYELDDHDEDVPQSLLVEGHHEDLKSQLPPPPRLHGRPDR RRTPSPGPSSQHTGTRWNEQAAHQTLPSESGHPIGRWFTGQHPGLANVDPKKKAMWRWANVEDLDNFLKDVYIYF LGNGIWSILLTRVLNLLTFAFVVGFSTFLTNCIDYSKVRRSKTLDDILVPQCTANMSGSSTFLLWLFSFFWIGKL FQYLLDIRRLKHLHDFYFYLLGVSDAEVQTISWQEVVSRLMALRDSNPSTAAAVSAKHRRFLGSQSKQRMDAHDI ANRLMRKENYMIALVNKDILDLTLPIPFLKNRQLFSRTMEWNLNLCVMDYVFNEQGQLRTLFLKDTHRRALSDGL RRRFIFAGVMNIFVAPFIVVYFMMHYFFRYFNEFKKNPGQIGSRQYTPMAEWKFREFNELWHLFERRINMSYPFA SRYVDQFPKDKTIQVARFVAFISGALASVLALASVIDPELFLGFEITPDRTVLFYLGIFGTVWAFARGLAPEETD VFDPEYALLELIDFTHYFPSGWKGRLHSDDVRKEFAILYQMKVVIFLEEILSMIFTPFVLWFSLPKCSDRLIDFF REFTVHVDGVGYLCSFAVFDFKKGTNVLSQAGPGRRDPGKQDLRTDYFSTKDGKMLASYYGFLDNYGTTHQPNSR RQFHPPPTLPTLNSPTAAEFGALPDRPDHLHARTGPTAGVPFGAQSMMGDSKLRQMGGFDHRSPAPSILLDPHHQ PSTTGFRAARTSPQQHHRSRLGHPSTDTIDDEEEPLSQDGRESTIRQSGARTGNSSAGAGTSDGNLGGSWRMNPL SKDEDDPDEGDEGENIDAIAGGGGVLGLIQQFQKVNTEGRRTGI* |
Coding | >Pro_DTO377G3_2|g7539.t1 ATGATGTCCTCTAACATATTATCACGGTTCCTACCTCCAACGGGCTCACGATCGGTCTATGAGACCATTCGCCAA CATGACGTCGGGTCCGAATACTCTGATCTCGAAGAACGTGCGGGCTTGGTCATAGAAGACCAACAGGAACAATTT AGTGACCGGGAACTGGAGGATGCACTAGCGGATGCACAGGATAGTGAAATAATCAGCCCCAGCACTGCATTGCTT GGGCAGGCACGGTCGGGCAAAGCACCTGAAGAGCGAGCTTCTCCATCTGGCACCCGCCGTCGCAAGTCGTCCCGG CCTCGGTGGATGCCACAAGAATCACCACTCGGATATGAGCTCGATGATCATGATGAGGACGTCCCTCAGTCTCTG CTGGTGGAAGGTCATCACGAAGATCTGAAATCACAGTTACCTCCTCCTCCCCGACTTCATGGTCGTCCGGACCGA CGAAGAACCCCTAGCCCTGGTCCATCCTCACAACACACCGGAACACGTTGGAATGAACAAGCAGCCCATCAAACA CTGCCCAGTGAAAGCGGTCATCCAATAGGGAGATGGTTCACCGGCCAACACCCTGGTCTTGCCAATGTTGACCCC AAGAAGAAGGCAATGTGGCGGTGGGCGAACGTCGAGGATCTGGATAACTTCTTAAAGGACGTCTACATATACTTC TTAGGGAACGGAATTTGGTCTATTCTGCTGACTCGGGTGCTGAACCTCTTGACATTTGCATTCGTTGTTGGTTTC TCTACATTCTTAACCAACTGCATTGATTATTCTAAGGTTCGGCGAAGTAAAACTCTGGATGACATCCTCGTGCCT CAATGTACAGCAAATATGTCCGGGTCGTCCACATTTTTGCTGTGGCTTTTTAGCTTCTTCTGGATTGGGAAGCTT TTCCAGTACCTACTAGACATTCGCAGGCTCAAACACCTGCATGACTTCTATTTCTACCTTCTCGGCGTCTCGGAT GCCGAGGTGCAGACGATTTCATGGCAAGAAGTGGTCAGTCGACTGATGGCGTTGAGAGATTCGAATCCATCTACT GCGGCTGCGGTTTCTGCCAAACATCGAAGATTCCTGGGCAGCCAGTCAAAGCAGAGAATGGACGCTCACGACATT GCCAACCGCCTAATGCGCAAGGAGAACTACATGATCGCATTAGTGAACAAGGATATTCTGGACCTTACTCTCCCT ATCCCGTTCCTCAAAAATCGACAACTCTTCTCCCGAACCATGGAATGGAATCTCAATCTTTGTGTCATGGACTAT GTCTTTAATGAGCAAGGCCAACTGCGAACCCTGTTCCTCAAGGACACGCATCGGAGAGCCCTGAGTGATGGCTTA CGTCGGCGCTTTATTTTCGCTGGCGTCATGAATATTTTCGTAGCGCCCTTTATTGTGGTCTATTTTATGATGCAC TACTTCTTCCGGTACTTCAATGAGTTCAAGAAGAATCCGGGCCAAATCGGTTCCCGTCAATATACACCTATGGCG GAGTGGAAATTCCGCGAGTTCAATGAGCTTTGGCATCTCTTTGAGCGTCGAATCAATATGTCTTATCCATTCGCT AGTCGCTATGTGGACCAATTTCCCAAGGATAAGACTATTCAAGTGGCACGGTTCGTTGCTTTCATCTCTGGCGCT CTTGCCTCGGTGTTGGCCCTTGCCTCGGTGATAGACCCGGAGCTCTTCCTTGGATTTGAAATTACTCCTGACCGG ACTGTGCTATTCTATCTTGGTATTTTCGGTACAGTCTGGGCCTTTGCGCGAGGGCTGGCACCCGAAGAGACCGAT GTCTTCGACCCCGAGTATGCACTTCTCGAGCTGATCGATTTTACTCATTACTTCCCGTCCGGATGGAAGGGGCGT TTGCATAGCGACGACGTGCGGAAAGAATTTGCAATCCTCTATCAAATGAAAGTTGTGATATTCTTAGAGGAGATC TTGAGCATGATTTTCACTCCTTTCGTCCTATGGTTCAGCTTGCCCAAGTGCAGTGACCGCCTCATTGACTTCTTC CGGGAGTTCACCGTGCACGTCGACGGGGTAGGCTATCTCTGCTCTTTTGCCGTATTCGACTTCAAGAAGGGCACA AATGTGCTTTCCCAAGCCGGGCCCGGGCGTCGAGACCCTGGCAAACAGGACCTGCGCACTGATTACTTCTCAACT AAAGATGGCAAGATGCTAGCTTCCTACTATGGCTTCTTGGACAACTACGGTACCACTCATCAACCTAACAGCCGA CGACAATTCCACCCACCGCCAACCTTGCCAACCCTCAACTCACCCACTGCAGCCGAGTTCGGTGCTCTTCCTGAT CGCCCTGACCATCTCCATGCACGCACTGGGCCGACCGCCGGTGTGCCATTTGGCGCTCAATCAATGATGGGAGAC TCTAAACTAAGGCAAATGGGAGGATTCGATCACCGATCTCCTGCTCCATCCATCCTGCTTGACCCGCACCACCAA CCCTCAACCACTGGGTTCCGCGCCGCCCGAACCAGCCCCCAGCAGCACCATCGCTCCCGGCTCGGACACCCGTCT ACGGATACTATCGACGACGAAGAAGAACCATTATCCCAAGACGGTCGTGAATCAACAATACGGCAGTCGGGTGCT CGTACCGGTAATTCCAGTGCAGGTGCAGGCACTAGTGACGGTAACCTCGGCGGTTCTTGGCGCATGAACCCACTC AGCAAGGACGAGGATGATCCTGATGAGGGCGATGAAGGTGAAAATATCGACGCCATTGCTGGTGGGGGCGGTGTT TTGGGGTTGATTCAGCAGTTCCAGAAAGTTAATACCGAAGGCAGACGGACGGGGATTTAG |
Transcript | >Pro_DTO377G3_2|g7539.t1 ATGATGTCCTCTAACATATTATCACGGTTCCTACCTCCAACGGGCTCACGATCGGTCTATGAGACCATTCGCCAA CATGACGTCGGGTCCGAATACTCTGATCTCGAAGAACGTGCGGGCTTGGTCATAGAAGACCAACAGGAACAATTT AGTGACCGGGAACTGGAGGATGCACTAGCGGATGCACAGGATAGTGAAATAATCAGCCCCAGCACTGCATTGCTT GGGCAGGCACGGTCGGGCAAAGCACCTGAAGAGCGAGCTTCTCCATCTGGCACCCGCCGTCGCAAGTCGTCCCGG CCTCGGTGGATGCCACAAGAATCACCACTCGGATATGAGCTCGATGATCATGATGAGGACGTCCCTCAGTCTCTG CTGGTGGAAGGTCATCACGAAGATCTGAAATCACAGTTACCTCCTCCTCCCCGACTTCATGGTCGTCCGGACCGA CGAAGAACCCCTAGCCCTGGTCCATCCTCACAACACACCGGAACACGTTGGAATGAACAAGCAGCCCATCAAACA CTGCCCAGTGAAAGCGGTCATCCAATAGGGAGATGGTTCACCGGCCAACACCCTGGTCTTGCCAATGTTGACCCC AAGAAGAAGGCAATGTGGCGGTGGGCGAACGTCGAGGATCTGGATAACTTCTTAAAGGACGTCTACATATACTTC TTAGGGAACGGAATTTGGTCTATTCTGCTGACTCGGGTGCTGAACCTCTTGACATTTGCATTCGTTGTTGGTTTC TCTACATTCTTAACCAACTGCATTGATTATTCTAAGGTTCGGCGAAGTAAAACTCTGGATGACATCCTCGTGCCT CAATGTACAGCAAATATGTCCGGGTCGTCCACATTTTTGCTGTGGCTTTTTAGCTTCTTCTGGATTGGGAAGCTT TTCCAGTACCTACTAGACATTCGCAGGCTCAAACACCTGCATGACTTCTATTTCTACCTTCTCGGCGTCTCGGAT GCCGAGGTGCAGACGATTTCATGGCAAGAAGTGGTCAGTCGACTGATGGCGTTGAGAGATTCGAATCCATCTACT GCGGCTGCGGTTTCTGCCAAACATCGAAGATTCCTGGGCAGCCAGTCAAAGCAGAGAATGGACGCTCACGACATT GCCAACCGCCTAATGCGCAAGGAGAACTACATGATCGCATTAGTGAACAAGGATATTCTGGACCTTACTCTCCCT ATCCCGTTCCTCAAAAATCGACAACTCTTCTCCCGAACCATGGAATGGAATCTCAATCTTTGTGTCATGGACTAT GTCTTTAATGAGCAAGGCCAACTGCGAACCCTGTTCCTCAAGGACACGCATCGGAGAGCCCTGAGTGATGGCTTA CGTCGGCGCTTTATTTTCGCTGGCGTCATGAATATTTTCGTAGCGCCCTTTATTGTGGTCTATTTTATGATGCAC TACTTCTTCCGGTACTTCAATGAGTTCAAGAAGAATCCGGGCCAAATCGGTTCCCGTCAATATACACCTATGGCG GAGTGGAAATTCCGCGAGTTCAATGAGCTTTGGCATCTCTTTGAGCGTCGAATCAATATGTCTTATCCATTCGCT AGTCGCTATGTGGACCAATTTCCCAAGGATAAGACTATTCAAGTGGCACGGTTCGTTGCTTTCATCTCTGGCGCT CTTGCCTCGGTGTTGGCCCTTGCCTCGGTGATAGACCCGGAGCTCTTCCTTGGATTTGAAATTACTCCTGACCGG ACTGTGCTATTCTATCTTGGTATTTTCGGTACAGTCTGGGCCTTTGCGCGAGGGCTGGCACCCGAAGAGACCGAT GTCTTCGACCCCGAGTATGCACTTCTCGAGCTGATCGATTTTACTCATTACTTCCCGTCCGGATGGAAGGGGCGT TTGCATAGCGACGACGTGCGGAAAGAATTTGCAATCCTCTATCAAATGAAAGTTGTGATATTCTTAGAGGAGATC TTGAGCATGATTTTCACTCCTTTCGTCCTATGGTTCAGCTTGCCCAAGTGCAGTGACCGCCTCATTGACTTCTTC CGGGAGTTCACCGTGCACGTCGACGGGGTAGGCTATCTCTGCTCTTTTGCCGTATTCGACTTCAAGAAGGGCACA AATGTGCTTTCCCAAGCCGGGCCCGGGCGTCGAGACCCTGGCAAACAGGACCTGCGCACTGATTACTTCTCAACT AAAGATGGCAAGATGCTAGCTTCCTACTATGGCTTCTTGGACAACTACGGTACCACTCATCAACCTAACAGCCGA CGACAATTCCACCCACCGCCAACCTTGCCAACCCTCAACTCACCCACTGCAGCCGAGTTCGGTGCTCTTCCTGAT CGCCCTGACCATCTCCATGCACGCACTGGGCCGACCGCCGGTGTGCCATTTGGCGCTCAATCAATGATGGGAGAC TCTAAACTAAGGCAAATGGGAGGATTCGATCACCGATCTCCTGCTCCATCCATCCTGCTTGACCCGCACCACCAA CCCTCAACCACTGGGTTCCGCGCCGCCCGAACCAGCCCCCAGCAGCACCATCGCTCCCGGCTCGGACACCCGTCT ACGGATACTATCGACGACGAAGAAGAACCATTATCCCAAGACGGTCGTGAATCAACAATACGGCAGTCGGGTGCT CGTACCGGTAATTCCAGTGCAGGTGCAGGCACTAGTGACGGTAACCTCGGCGGTTCTTGGCGCATGAACCCACTC AGCAAGGACGAGGATGATCCTGATGAGGGCGATGAAGGTGAAAATATCGACGCCATTGCTGGTGGGGGCGGTGTT TTGGGGTTGATTCAGCAGTTCCAGAAAGTTAATACCGAAGGCAGACGGACGGGGATTTAG |
Gene | >Pro_DTO377G3_2|g7539.t1 ATGATGTCCTCTAACATATTATCACGGTTCCTACCTCCAACGGGCTCACGATCGGTCTATGAGACCATTCGCCAA CATGACGTCGGGTCCGAATACTCTGATCTCGAAGAACGTGCGGGCTTGGTCATAGAAGACCAACAGGAACAATTT AGTGACCGGGAACTGGAGGATGCACTAGCGGATGCACAGGATAGTGAAATAATCAGCCCCAGCACTGCATTGCTT GGGCAGGCACGGTCGGGCAAAGCACCTGAAGAGCGAGCTTCTCCATCTGGCACCCGCCGTCGCAAGTCGTCCCGG CCTCGGTGGATGCCACAAGAATCACCACTCGGATATGAGCTCGATGATCATGATGAGGACGTCCCTCAGTCTCTG CTGGTGGAAGGTCATCACGAAGATCTGAAATCACAGTTACCTCCTCCTCCCCGACTTCATGGTCGTCCGGACCGA CGAAGAACCCCTAGCCCTGGTCCATCCTCACAACACACCGGAACACGTTGGAATGAACAAGCAGCCCATCAAACA CTGCCCAGTGAAAGCGGTCATCCAATAGGGAGATGGTTCACCGGCCAACACCCTGGTCTTGCCAATGTTGACCCC AAGAAGAAGGCAATGTGGCGGTGGGCGAACGTCGAGGATCTGGATAACTTCTTAAAGGACGTCTACATATACTTC TTAGGGAACGGAATTTGGTCTATTCTGCTGACTCGGGTGCTGAACCTCTTGTAAGTTCACGATGAAACCCTTTCC AAAGCATCCTAGGAGAAGCTGACAGTACACACAGGACATTTGCATTCGTTGTTGGTTTCTCTACATTCTTAACCA ACTGCATTGATTATTCTAAGGTTCGGCGAAGTAAAACTCTGGATGACATCCTCGTGCCTCAATGTACAGCAAATA TGTCCGGGTCGTCCACATTTTTGCTGTGGCTTTTTAGCTTCTTCTGGATTGGGAAGCTTTTCCAGTACCTACTAG ACATTCGCAGGCTCAAACACCTGCATGACTTCTATTTCTACCTTCTCGGCGTCTCGGATGCCGAGGTGCAGACGA TTTCATGGCAAGAAGTGGTCAGTCGACTGATGGCGTTGAGAGATTCGAATCCATCTACTGCGGCTGCGGTTTCTG CCAAACATCGAAGATTCCTGGGCAGCCAGTCAAAGCAGAGAATGGACGCTCACGACATTGCCAACCGCCTAATGC GCAAGGAGAACTACATGATCGCATTAGTGAACAAGGATATTCTGGACCTTACTCTCCCTATCCCGTTCCTCAAAA ATCGACAACTCTTCTCCCGAACCATGGAATGGAATCTCAATCTTTGTGTCATGGACTATGTCTTTAATGAGCAAG GCCAACTGCGAACCCTGTTCCTCAAGGACACGCATCGGAGAGCCCTGAGTGATGGCTTACGTCGGCGCTTTATTT TCGCTGGCGTCATGAATATTTTCGTAGCGCCCTTTATTGTGGTCTATTTTATGATGCACTACTTCTTCCGGTACT TCAATGAGTTCAAGAAGAATCCGGGCCAAATCGGTTCCCGTCAATATACACCTATGGCGGAGTGGAAATTCCGCG AGTTCAATGAGCTTTGGCATCTCTTTGAGCGTCGAATCAATATGTCTTATCCATTCGCTAGTCGCTATGTGGACC AATTTCCCAAGGATAAGACTATTCAAGTGGCACGGTTCGTTGCTTTCATCTCTGGCGCTCTTGCCTCGGTGTTGG CCCTTGCCTCGGTGATAGACCCGGAGCTCTTCCTTGGATTTGAAATTACTCCTGACCGGACTGTGCTATTCTATC TTGGTATTTTCGGTACAGTCTGGGCCTTTGCGCGAGGGCTGGCACCCGAAGAGACCGATGTCTTCGACCCCGAGT ATGCACTTCTCGAGCTGATCGATTTTACTCATTACTTCCCGTCCGGATGGAAGGGGCGTTTGCATAGCGACGACG TGCGGAAAGAATTTGCAATCCTCTATCAAATGAAAGTTGTGATATTCTTAGAGGAGATCTTGAGCATGATTTTCA CTCCTTTCGTCCTATGGTTCAGCTTGCCCAAGTGCAGTGACCGCCTCATTGACTTCTTCCGGGAGTTCACCGTGC ACGTCGACGGGGTAGGCTATCTCTGCTCTTTTGCCGTATTCGACTTCAAGAAGGGCACAAATGTGCTTTCCCAAG CCGGGCCCGGGCGTCGAGACCCTGGCAAACAGGACCTGCGCACTGATTACTTCTCAACTAAAGATGGCAAGATGC TAGCTTCCTACTATGGCTTCTTGGACAACTACGGTACCACTCATCAACCTAACAGCCGACGACAATTCCACCCAC CGCCAACCTTGCCAACCCTCAACTCACCCACTGCAGCCGAGTTCGGTGCTCTTCCTGATCGCCCTGACCATCTCC ATGCACGCACTGGGCCGACCGCCGGTGTGCCATTTGGCGCTCAATCAATGATGGGAGACTCTAAACTAAGGCAAA TGGGAGGATTCGATCACCGATCTCCTGCTCCATCCATCCTGCTTGACCCGCACCACCAACCCTCAACCACTGGGT TCCGCGCCGCCCGAACCAGCCCCCAGCAGCACCATCGCTCCCGGCTCGGACACCCGTCTACGGATACTATCGACG ACGAAGAAGAACCATTATCCCAAGACGGTCGTGAATCAACAATACGGCAGTCGGGTGCTCGTACCGGTAATTCCA GTGCAGGTGCAGGCACTAGTGACGGTAACCTCGGCGGTTCTTGGCGCATGAACCCACTCAGCAAGGACGAGGATG ATCCTGATGAGGGCGATGAAGGTGAAAATATCGACGCCATTGCTGGTGGGGGCGGTGTTTTGGGGTTGATTCAGC AGTTCCAGAAAGTTAATACCGAAGGCAGACGGACGGGGATTTAG |