© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7522.t1 |
| Gene name | |
| Location | scaffold_24:37760..39491 |
| Strand | + |
| Gene length (bp) | 1731 |
| Transcript length (bp) | 1533 |
| Coding sequence length (bp) | 1533 |
| Protein length (aa) | 511 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01485 | IBR | IBR domain, a half RING-finger domain | 2.1E-12 | 206 | 272 |
| PF01485 | IBR | IBR domain, a half RING-finger domain | 2.6E-07 | 290 | 336 |
| PF19422 | Ariadne | Ariadne domain | 4.9E-13 | 357 | 475 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 63 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 87.91 | 54.02 | 121.80 |
| 5d_25C | Five days - 25 degrees Celsius | 133.95 | 81.43 | 186.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 159.29 | 96.11 | 222.47 |
| 10d_25C | Ten days - 25 degrees Celsius | 232.74 | 137.69 | 327.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 102.35 | 62.43 | 142.26 |
| 7d_30C | Seven days - 30 degrees Celsius | 154.52 | 93.63 | 215.41 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.040411 | yes |
| 3d_25C | 7d_25C | 0.002761 | yes |
| 3d_25C | 7d_15C | 0.555050 | no |
| 3d_25C | 7d_30C | 0.004840 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.504110 | no |
| 5d_25C | 7d_15C | 0.239596 | no |
| 5d_25C | 7d_30C | 0.589764 | no |
| 5d_25C | 10d_25C | 0.007437 | yes |
| 7d_25C | 7d_15C | 0.035014 | yes |
| 7d_25C | 7d_30C | 0.929274 | no |
| 7d_25C | 10d_25C | 0.078790 | no |
| 7d_15C | 7d_30C | 0.052179 | no |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.049955 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7522.t1 MDSDDDFMSDVSSQDDFLGTQGSDDESLGEDFDDLDAGFSDDKDLIKHKKKPYEVEFKVLAPADIDHEQLGQVNE VCAILGLPPESAAILLRFGRWNKEKLIESYMEHPEQTLEEAGLGSNFEGTAKTECIPGFMCDICCEDGDDLETYA MRCGHRYCVGCYRHYLAQKIKEEGEASRIQCPGDRCNRIVDSKSLDLLVTKELQGRYRELLTRTYVDDNENLKWC PAPNCQYAIDCGVKQRDLRRIVPTVRCFCKNEFCFGCSLSDHQPAPCTLVKMWLQKCEDDSETANWISANTKECT KCNSTIEKNGGCNHMTCRKCKYEFCWMCMGLWSEHGTSWYNCNRYEEKSGADARSAQAKSRSSLERYLHYYNRYA NHEQSAKLDKDLYLKTEKKMTSLQSQSGLSWIEVQFLDTASQALQQCRQTLKWTYAFAFYLARNNLTEIFEDNQK DLEMAVESLSEMFEKPVAELAGLKVDILDKTTYCNNRRVILLSVTAENLKNGEWTFNIDW* |
| Coding | >Pro_DTO377G3_2|g7522.t1 ATGGACTCTGACGATGATTTCATGAGCGACGTCTCCAGCCAGGATGATTTCTTGGGTACCCAGGGCTCTGACGAT GAGAGCTTGGGTGAAGACTTCGATGATCTCGACGCCGGATTCTCGGACGATAAAGACCTCATTAAACATAAAAAG AAGCCATACGAAGTCGAGTTCAAGGTTCTTGCTCCTGCAGATATCGATCACGAACAGCTTGGCCAGGTCAACGAG GTTTGCGCCATTCTCGGACTGCCGCCTGAGTCGGCGGCGATTTTGTTACGGTTCGGCCGGTGGAACAAAGAAAAG TTGATCGAGTCTTATATGGAGCATCCGGAGCAGACGCTGGAGGAGGCTGGTCTTGGATCGAACTTTGAGGGGACC GCGAAGACCGAGTGCATCCCGGGCTTCATGTGTGATATCTGCTGCGAGGACGGTGATGACCTCGAGACGTATGCC ATGCGTTGTGGTCACCGATATTGTGTCGGCTGCTATCGGCACTACCTGGCGCAGAAAATCAAGGAAGAAGGAGAG GCTAGTCGAATCCAGTGTCCAGGCGACCGCTGTAATCGCATCGTGGACTCTAAGTCGCTGGATCTGCTCGTGACA AAAGAGCTTCAAGGAAGATACCGTGAACTTCTAACTCGAACATACGTTGACGACAATGAGAACCTAAAATGGTGT CCCGCGCCAAACTGCCAATACGCCATTGACTGTGGGGTAAAGCAACGTGATCTCCGTCGCATAGTTCCCACAGTG CGATGTTTCTGTAAGAATGAGTTCTGCTTCGGCTGTTCCCTCAGCGACCACCAGCCCGCTCCATGCACCCTGGTC AAGATGTGGCTACAGAAATGTGAAGATGACTCCGAGACGGCCAACTGGATCTCGGCAAACACCAAGGAGTGTACC AAATGTAACTCGACGATCGAGAAGAACGGTGGCTGTAACCACATGACGTGCCGCAAGTGCAAGTACGAGTTCTGC TGGATGTGTATGGGTCTGTGGTCCGAGCATGGCACGAGCTGGTATAACTGCAACCGCTACGAAGAAAAGTCAGGC GCGGATGCTCGCAGTGCTCAAGCCAAATCACGTTCCTCCCTGGAGCGCTATCTGCATTACTATAATCGCTATGCG AACCATGAACAGTCTGCCAAGCTCGACAAGGACTTGTACCTGAAGACCGAGAAGAAAATGACTAGCCTTCAGTCA CAGTCTGGTCTGTCCTGGATTGAGGTGCAGTTCCTGGACACCGCGTCGCAGGCCCTGCAGCAGTGTCGCCAGACC TTGAAGTGGACCTACGCCTTTGCATTTTACCTTGCGCGCAACAATCTGACCGAGATATTTGAGGATAACCAGAAG GATTTGGAAATGGCCGTTGAGAGTCTCAGTGAGATGTTCGAGAAACCAGTTGCCGAGTTGGCAGGACTCAAGGTC GATATCCTGGATAAGACTACTTACTGCAACAACCGCCGGGTGATTCTATTGAGTGTCACTGCTGAAAACTTGAAG AATGGAGAGTGGACATTTAACATTGATTGGTAA |
| Transcript | >Pro_DTO377G3_2|g7522.t1 ATGGACTCTGACGATGATTTCATGAGCGACGTCTCCAGCCAGGATGATTTCTTGGGTACCCAGGGCTCTGACGAT GAGAGCTTGGGTGAAGACTTCGATGATCTCGACGCCGGATTCTCGGACGATAAAGACCTCATTAAACATAAAAAG AAGCCATACGAAGTCGAGTTCAAGGTTCTTGCTCCTGCAGATATCGATCACGAACAGCTTGGCCAGGTCAACGAG GTTTGCGCCATTCTCGGACTGCCGCCTGAGTCGGCGGCGATTTTGTTACGGTTCGGCCGGTGGAACAAAGAAAAG TTGATCGAGTCTTATATGGAGCATCCGGAGCAGACGCTGGAGGAGGCTGGTCTTGGATCGAACTTTGAGGGGACC GCGAAGACCGAGTGCATCCCGGGCTTCATGTGTGATATCTGCTGCGAGGACGGTGATGACCTCGAGACGTATGCC ATGCGTTGTGGTCACCGATATTGTGTCGGCTGCTATCGGCACTACCTGGCGCAGAAAATCAAGGAAGAAGGAGAG GCTAGTCGAATCCAGTGTCCAGGCGACCGCTGTAATCGCATCGTGGACTCTAAGTCGCTGGATCTGCTCGTGACA AAAGAGCTTCAAGGAAGATACCGTGAACTTCTAACTCGAACATACGTTGACGACAATGAGAACCTAAAATGGTGT CCCGCGCCAAACTGCCAATACGCCATTGACTGTGGGGTAAAGCAACGTGATCTCCGTCGCATAGTTCCCACAGTG CGATGTTTCTGTAAGAATGAGTTCTGCTTCGGCTGTTCCCTCAGCGACCACCAGCCCGCTCCATGCACCCTGGTC AAGATGTGGCTACAGAAATGTGAAGATGACTCCGAGACGGCCAACTGGATCTCGGCAAACACCAAGGAGTGTACC AAATGTAACTCGACGATCGAGAAGAACGGTGGCTGTAACCACATGACGTGCCGCAAGTGCAAGTACGAGTTCTGC TGGATGTGTATGGGTCTGTGGTCCGAGCATGGCACGAGCTGGTATAACTGCAACCGCTACGAAGAAAAGTCAGGC GCGGATGCTCGCAGTGCTCAAGCCAAATCACGTTCCTCCCTGGAGCGCTATCTGCATTACTATAATCGCTATGCG AACCATGAACAGTCTGCCAAGCTCGACAAGGACTTGTACCTGAAGACCGAGAAGAAAATGACTAGCCTTCAGTCA CAGTCTGGTCTGTCCTGGATTGAGGTGCAGTTCCTGGACACCGCGTCGCAGGCCCTGCAGCAGTGTCGCCAGACC TTGAAGTGGACCTACGCCTTTGCATTTTACCTTGCGCGCAACAATCTGACCGAGATATTTGAGGATAACCAGAAG GATTTGGAAATGGCCGTTGAGAGTCTCAGTGAGATGTTCGAGAAACCAGTTGCCGAGTTGGCAGGACTCAAGGTC GATATCCTGGATAAGACTACTTACTGCAACAACCGCCGGGTGATTCTATTGAGTGTCACTGCTGAAAACTTGAAG AATGGAGAGTGGACATTTAACATTGATTGGTAA |
| Gene | >Pro_DTO377G3_2|g7522.t1 ATGGACTCTGACGATGATTTCATGAGCGACGTCTCCAGCCAGGATGATTTCTTGGGTACCCAGGGCTCTGACGAT GAGAGCTTGGGTGAAGGTACATGCCTGATCTTGCGTTGTTTATGTTTTGTGCGACTGTGTCTCGAGTATAGTGAC TAACAGATATGCCTTGGGGAGCAGACTTCGATGATCTCGACGCCGGATTCTCGGACGATAAAGACCTCATTAAAC ATAAAAAGAAGCCATACGAAGTCGAGTTCAAGGTTCTTGCTCCTGCAGATATCGATCACGAACAGCTTGGCCAGG TCAACGAGGTTTGCGCCATTCTCGGACTGCCGCCTGAGTCGGCGGCGATTTTGTTACGGTTCGGCCGGTGGAACA AAGAAAAGTTGATCGAGTCTTATATGGAGCATCCGGAGCAGACGCTGGAGGAGGCTGGTCTTGGATCGAACTTTG AGGGGACCGCGAAGACCGAGTGCATCCCGGGCTTCATGTGTGATATCTGCTGCGAGGACGGTGATGACCTCGAGA CGTATGCCATGCGTTGTGGTCACCGATATTGTGTCGGCTGCTATCGGCACTACCTGGCGCAGAAAATCAAGGAAG AAGGAGAGGCTAGTCGAATCCAGTGTCCAGGCGACCGCTGTAATCGCATCGTGGACTCTAAGTCGCTGGATCTGC TCGTGACAAAAGAGCTTCAAGGAAGGTGCGTGTTTATGCAGGCAATTCTAGACGGAAGCAAGAGTTCGCTAACAC ATCTCTCACTACAGATACCGTGAACTTCTAACTCGAACATACGTTGACGACAATGAGAACCTAAAATGGTGTCCC GCGCCAAACTGCCAATACGCCATTGACTGTGGGGTAAAGCAACGTGATCTCCGTCGCATAGTTCCCACAGTGCGA TGTTTCTGTAAGAATGAGTTCTGCTTCGGCTGTTCCCTCAGCGACCACCAGCCCGCTCCATGCACCCTGGTCAAG ATGTGGCTACAGAAATGTGAAGATGACTCCGAGACGGCCAACTGGATCTCGGCAAACACCAAGGAGTGTACCAAA TGTAACTCGACGATCGAGAAGAACGGTGGCTGTAACCACATGACGTGCCGCAAGTGCAAGTACGAGTTCTGCTGG ATGTGTATGGGTCTGTGGTCCGAGCATGGCACGAGCTGGTATAACTGCAACCGCTACGAAGAAAAGTCAGGCGCG GATGCTCGCAGTGCTCAAGCCAAATCACGTTCCTCCCTGGAGCGCTATCTGCATTACTATAATCGCTATGCGAAC CATGAACAGTCTGCCAAGCTCGACAAGGACTTGTACCTGAAGACCGAGAAGAAAATGACTAGCCTTCAGTCACAG TCTGGTCTGTCCTGGATTGAGGTGCAGTTCCTGGACACCGCGTCGCAGGCCCTGCAGCAGTGTCGCCAGACCTTG AAGTGGACCTACGCCTTTGCATTTTACCTTGCGCGCAACAATCTGACCGAGATATTTGAGGATAACCAGAAGGAT TTGGAAATGGCCGTTGAGAGTCTCAGTGAGATGTTCGAGAAACCAGTTGCCGAGTTGGCAGGACTCAAGGTCGAT ATCCTGGATAAGACTACTTACTGCAACAACCGCCGGGTGATTCTATTGAGTGTCACTGCTGAAAACTTGAAGAAT GGTAAAGGAATCTTAGATATCATCTGAGTACATTGCTAACACCTGTTGCTAGGAGAGTGGACATTTAACATTGAT TGGTAA |