© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g75.t1 |
| Gene name | |
| Location | scaffold_01:191239..193476 |
| Strand | - |
| Gene length (bp) | 2237 |
| Transcript length (bp) | 2184 |
| Coding sequence length (bp) | 2184 |
| Protein length (aa) | 728 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00005 | ABC_tran | ABC transporter | 1.8E-07 | 165 | 237 |
| PF00005 | ABC_tran | ABC transporter | 1.8E-11 | 396 | 591 |
| PF13304 | AAA_21 | AAA domain, putative AbiEii toxin, Type IV TA system | 5.3E-07 | 176 | 257 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016887 | ATP hydrolysis activity | Yes |
| GO:0005524 | ATP binding | Yes |
| GO:0005488 | binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043167 | ion binding | No |
| GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0016462 | pyrophosphatase activity | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| GO:0003674 | molecular_function | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0016787 | hydrolase activity | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0016817 | hydrolase activity, acting on acid anhydrides | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0017111 | nucleoside-triphosphatase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 11 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.78 | 8.33 | 23.22 |
| 5d_25C | Five days - 25 degrees Celsius | 10.01 | 4.68 | 15.34 |
| 7d_25C | Seven days - 25 degrees Celsius | 8.56 | 3.82 | 13.30 |
| 10d_25C | Ten days - 25 degrees Celsius | 5.85 | 2.29 | 9.40 |
| 7d_15C | Seven days - 15 degrees Celsius | 9.35 | 4.20 | 14.49 |
| 7d_30C | Seven days - 30 degrees Celsius | 7.45 | 3.25 | 11.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.109060 | no |
| 3d_25C | 7d_25C | 0.027948 | yes |
| 3d_25C | 7d_15C | 0.069866 | no |
| 3d_25C | 7d_30C | 0.006742 | yes |
| 3d_25C | 10d_25C | 0.001804 | yes |
| 5d_25C | 7d_25C | 0.697676 | no |
| 5d_25C | 7d_15C | 0.883396 | no |
| 5d_25C | 7d_30C | 0.389299 | no |
| 5d_25C | 10d_25C | 0.095402 | no |
| 7d_25C | 7d_15C | 0.846887 | no |
| 7d_25C | 7d_30C | 0.737473 | no |
| 7d_25C | 10d_25C | 0.275637 | no |
| 7d_15C | 7d_30C | 0.538002 | no |
| 7d_15C | 10d_25C | 0.160596 | no |
| 7d_30C | 10d_25C | 0.533261 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g75.t1 MLLRTKLRPRALRLTAYRPTRFKSEIPFLRIEDGTFYKKYPTSEDTSNPPLFPNLNFTLPAIYVNGATKEAPPQH WAIIGPAGRTDLLHILRGQHICIPPKARSYPYLLTDEIAEKDPRLRVIENAVQYVGFSGEGSGAIGGVRGAYLSA RYESHREETDWTVLQYLRGQTSLNPMEGDENGTLHDELSLQRTIESLELGNLLLLPVSSLSNGQTRRARIAKAIL SKPELLLLDEPFMGLDPVAVRKISNLLHELAKKSAPRLILALRPQDKVPDWITHIMILGNDHKVLLQGPKPAIED TLNVWSYVANKSKPDSLPDQQAEILEKCTADLKAGVLDKELLGDLVAHTNEIKSTEVHAPLGGEPVIDMEGVHVK YGDKVVLGNWQQNVNGEAKDGLHWRVRRGQRWAILGPNGSGKTTLLSMVTSDHPQAYAQPVKLFGRSRLPEPGKP GISIFELQSRIGHSSPEIHAFFPRQLSIRAALESAFAETFLSKPKLNIQRDQDISAVLQFFQPYLDPNYAPGEVP KISTAGLPSLTKRTHVKLGTYALMDHIVGYADEILFSELTTAQQRIVLFLRAIVAKPDIVILDEAFSGLSAAQRN ACLHFLENGERPKRRALNVQARSSKESEFRFTGLTEDQALIMTSHVADEIPDSVRYYMRLPSPPGTFNPLDFRFG ILQSKTTLRHPQTWEAAWSPPDAFIKHARRTWRRKQHTLPVQDMTEFEWWSI* |
| Coding | >Pro_DTO377G3_2|g75.t1 ATGCTACTCCGAACGAAATTGCGACCGAGGGCATTGCGGCTCACGGCTTACCGCCCGACCCGTTTCAAGTCTGAA ATCCCATTCCTTCGTATTGAAGATGGAACCTTTTACAAGAAATACCCAACCTCCGAAGACACGTCCAATCCACCT CTTTTCCCAAACCTGAACTTCACTCTGCCCGCTATTTATGTTAACGGTGCAACCAAGGAGGCACCTCCGCAACAC TGGGCTATAATCGGTCCAGCCGGTCGAACCGACCTCCTGCATATCCTCCGCGGCCAACACATCTGTATCCCGCCC AAGGCACGTTCATATCCGTACCTCCTCACAGACGAGATCGCCGAAAAAGACCCACGGCTACGCGTGATTGAAAAT GCGGTCCAATATGTTGGTTTCAGCGGCGAGGGCTCGGGGGCCATTGGAGGGGTCCGTGGCGCATATCTCAGTGCT CGCTATGAGAGTCACCGGGAGGAAACCGACTGGACCGTGCTGCAATACTTGCGTGGGCAGACCTCCTTGAATCCG ATGGAGGGCGATGAAAATGGCACGCTACATGATGAACTCTCTCTCCAGCGGACCATTGAAAGTCTTGAGCTAGGA AATCTTCTCCTCTTGCCAGTCTCGAGTCTAAGCAATGGTCAAACTCGTCGAGCGCGAATTGCAAAGGCTATTCTA AGCAAACCAGAGCTATTGCTTCTTGACGAGCCATTCATGGGATTGGACCCGGTGGCAGTGAGGAAGATCTCTAAC CTTCTTCATGAATTAGCGAAGAAGAGCGCCCCGCGGCTCATTCTAGCTCTGCGCCCCCAGGACAAGGTGCCGGAC TGGATCACACACATTATGATTTTGGGCAATGACCATAAGGTTCTCCTGCAAGGGCCAAAGCCAGCTATCGAAGAC ACGCTCAATGTCTGGAGCTACGTCGCAAATAAATCTAAGCCGGACTCTTTACCCGACCAGCAAGCGGAAATATTG GAGAAATGTACAGCAGACTTGAAGGCTGGTGTTTTGGACAAAGAACTCCTTGGGGATTTAGTGGCGCATACGAAT GAGATAAAGTCCACAGAAGTCCATGCACCCTTGGGCGGAGAGCCAGTCATTGATATGGAAGGAGTTCATGTCAAG TACGGGGATAAGGTAGTACTCGGTAATTGGCAACAGAACGTAAATGGCGAAGCAAAGGATGGGCTGCATTGGCGA GTACGTCGGGGGCAACGCTGGGCGATCCTTGGTCCCAACGGGTCAGGCAAGACAACATTGCTATCAATGGTCACA TCCGACCATCCGCAAGCGTATGCACAGCCTGTCAAACTTTTCGGACGATCCAGGCTTCCGGAGCCTGGCAAACCA GGAATTTCAATCTTCGAACTGCAGTCCCGCATTGGACATTCATCACCGGAGATCCATGCGTTCTTCCCGCGTCAA TTATCAATCCGTGCAGCACTTGAGAGTGCCTTCGCCGAGACCTTCCTGTCAAAGCCGAAGCTGAACATTCAACGC GATCAAGATATATCCGCAGTCCTGCAATTCTTCCAGCCCTATCTGGATCCAAATTACGCCCCGGGCGAGGTACCA AAAATATCGACTGCCGGTCTCCCGTCACTCACGAAGCGGACTCACGTCAAGCTAGGTACATACGCGTTAATGGAT CACATTGTTGGATACGCAGATGAAATTCTCTTCAGTGAGCTCACCACCGCACAACAACGCATTGTGCTTTTCCTC CGGGCCATCGTCGCCAAGCCGGACATTGTTATTCTCGACGAAGCTTTCTCGGGCCTATCTGCAGCACAGCGTAAC GCGTGCTTGCATTTCTTAGAAAATGGCGAGAGACCTAAACGCCGTGCACTTAATGTTCAAGCCCGCTCCTCGAAG GAGTCGGAATTCCGGTTCACTGGTCTCACGGAGGATCAAGCCTTGATCATGACTAGCCATGTGGCCGATGAGATT CCCGACAGCGTCCGCTACTACATGCGACTGCCGTCTCCTCCAGGGACTTTCAATCCCCTTGATTTCCGCTTTGGT ATTCTCCAATCTAAAACCACTCTGCGACACCCTCAGACCTGGGAGGCAGCCTGGTCTCCTCCCGACGCGTTCATC AAGCATGCCCGCAGGACGTGGCGCCGCAAGCAACATACTTTGCCGGTACAGGATATGACTGAATTCGAATGGTGG TCGATATAG |
| Transcript | >Pro_DTO377G3_2|g75.t1 ATGCTACTCCGAACGAAATTGCGACCGAGGGCATTGCGGCTCACGGCTTACCGCCCGACCCGTTTCAAGTCTGAA ATCCCATTCCTTCGTATTGAAGATGGAACCTTTTACAAGAAATACCCAACCTCCGAAGACACGTCCAATCCACCT CTTTTCCCAAACCTGAACTTCACTCTGCCCGCTATTTATGTTAACGGTGCAACCAAGGAGGCACCTCCGCAACAC TGGGCTATAATCGGTCCAGCCGGTCGAACCGACCTCCTGCATATCCTCCGCGGCCAACACATCTGTATCCCGCCC AAGGCACGTTCATATCCGTACCTCCTCACAGACGAGATCGCCGAAAAAGACCCACGGCTACGCGTGATTGAAAAT GCGGTCCAATATGTTGGTTTCAGCGGCGAGGGCTCGGGGGCCATTGGAGGGGTCCGTGGCGCATATCTCAGTGCT CGCTATGAGAGTCACCGGGAGGAAACCGACTGGACCGTGCTGCAATACTTGCGTGGGCAGACCTCCTTGAATCCG ATGGAGGGCGATGAAAATGGCACGCTACATGATGAACTCTCTCTCCAGCGGACCATTGAAAGTCTTGAGCTAGGA AATCTTCTCCTCTTGCCAGTCTCGAGTCTAAGCAATGGTCAAACTCGTCGAGCGCGAATTGCAAAGGCTATTCTA AGCAAACCAGAGCTATTGCTTCTTGACGAGCCATTCATGGGATTGGACCCGGTGGCAGTGAGGAAGATCTCTAAC CTTCTTCATGAATTAGCGAAGAAGAGCGCCCCGCGGCTCATTCTAGCTCTGCGCCCCCAGGACAAGGTGCCGGAC TGGATCACACACATTATGATTTTGGGCAATGACCATAAGGTTCTCCTGCAAGGGCCAAAGCCAGCTATCGAAGAC ACGCTCAATGTCTGGAGCTACGTCGCAAATAAATCTAAGCCGGACTCTTTACCCGACCAGCAAGCGGAAATATTG GAGAAATGTACAGCAGACTTGAAGGCTGGTGTTTTGGACAAAGAACTCCTTGGGGATTTAGTGGCGCATACGAAT GAGATAAAGTCCACAGAAGTCCATGCACCCTTGGGCGGAGAGCCAGTCATTGATATGGAAGGAGTTCATGTCAAG TACGGGGATAAGGTAGTACTCGGTAATTGGCAACAGAACGTAAATGGCGAAGCAAAGGATGGGCTGCATTGGCGA GTACGTCGGGGGCAACGCTGGGCGATCCTTGGTCCCAACGGGTCAGGCAAGACAACATTGCTATCAATGGTCACA TCCGACCATCCGCAAGCGTATGCACAGCCTGTCAAACTTTTCGGACGATCCAGGCTTCCGGAGCCTGGCAAACCA GGAATTTCAATCTTCGAACTGCAGTCCCGCATTGGACATTCATCACCGGAGATCCATGCGTTCTTCCCGCGTCAA TTATCAATCCGTGCAGCACTTGAGAGTGCCTTCGCCGAGACCTTCCTGTCAAAGCCGAAGCTGAACATTCAACGC GATCAAGATATATCCGCAGTCCTGCAATTCTTCCAGCCCTATCTGGATCCAAATTACGCCCCGGGCGAGGTACCA AAAATATCGACTGCCGGTCTCCCGTCACTCACGAAGCGGACTCACGTCAAGCTAGGTACATACGCGTTAATGGAT CACATTGTTGGATACGCAGATGAAATTCTCTTCAGTGAGCTCACCACCGCACAACAACGCATTGTGCTTTTCCTC CGGGCCATCGTCGCCAAGCCGGACATTGTTATTCTCGACGAAGCTTTCTCGGGCCTATCTGCAGCACAGCGTAAC GCGTGCTTGCATTTCTTAGAAAATGGCGAGAGACCTAAACGCCGTGCACTTAATGTTCAAGCCCGCTCCTCGAAG GAGTCGGAATTCCGGTTCACTGGTCTCACGGAGGATCAAGCCTTGATCATGACTAGCCATGTGGCCGATGAGATT CCCGACAGCGTCCGCTACTACATGCGACTGCCGTCTCCTCCAGGGACTTTCAATCCCCTTGATTTCCGCTTTGGT ATTCTCCAATCTAAAACCACTCTGCGACACCCTCAGACCTGGGAGGCAGCCTGGTCTCCTCCCGACGCGTTCATC AAGCATGCCCGCAGGACGTGGCGCCGCAAGCAACATACTTTGCCGGTACAGGATATGACTGAATTCGAATGGTGG TCGATATAG |
| Gene | >Pro_DTO377G3_2|g75.t1 ATGCTACTCCGAACGAAATTGCGACCGAGGGCATTGCGGCTCACGGCTTACCGCCCGACCCGTTTCAAGTCTGAA ATCCCATTCCTTCGTATTGAAGATGGAACCTTTTACAAGAAATACCCAACCTCCGAAGACACGTCCAATCCACCT CTTTTCCCAAACCTGAACTTCACTCTGCCCGCTATTTATGTTAACGGTGCAACCAAGGAGGCACCTCCGCAACAC TGGGCTATAATCGGTCCAGCCGGTCGAACCGACCTCCTGCATATCCTCCGCGGCCAACACATCTGTATCCCGCCC AAGGCACGTTCATATCCGTACCTCCTCACAGACGAGATCGCCGAAAAAGACCCACGGCTACGCGTGATTGAAAAT GCGGTCCAATATGTTGGTTTCAGCGGCGAGGGCTCGGGGGCCATTGGAGGGGTCCGTGGCGCATATCTCAGTGCT CGCTATGAGAGTCACCGGGAGGAAACCGACTGGACCGTGCTGCAATACTTGCGTGGGCAGACCTCCTTGAATCCG ATGGAGGGCGATGAAAATGGCACGCTACATGATGAACTCTCTCTCCAGCGGACCATTGAAAGTCTTGAGCTAGGA AATCTTCTCCTCTTGCCAGTCTCGAGTCTAAGCAATGGTCAAACTCGTCGAGCGCGAATTGCAAAGGCTATTCTA AGCAAACCAGAGCTATTGCTTCTTGACGAGCCATTCAGTAAGTGTTTCTGATTCACATTCGATGGCTGTGATATT CTAACCTCTACTTAGTGGGATTGGACCCGGTGGCAGTGAGGAAGATCTCTAACCTTCTTCATGAATTAGCGAAGA AGAGCGCCCCGCGGCTCATTCTAGCTCTGCGCCCCCAGGACAAGGTGCCGGACTGGATCACACACATTATGATTT TGGGCAATGACCATAAGGTTCTCCTGCAAGGGCCAAAGCCAGCTATCGAAGACACGCTCAATGTCTGGAGCTACG TCGCAAATAAATCTAAGCCGGACTCTTTACCCGACCAGCAAGCGGAAATATTGGAGAAATGTACAGCAGACTTGA AGGCTGGTGTTTTGGACAAAGAACTCCTTGGGGATTTAGTGGCGCATACGAATGAGATAAAGTCCACAGAAGTCC ATGCACCCTTGGGCGGAGAGCCAGTCATTGATATGGAAGGAGTTCATGTCAAGTACGGGGATAAGGTAGTACTCG GTAATTGGCAACAGAACGTAAATGGCGAAGCAAAGGATGGGCTGCATTGGCGAGTACGTCGGGGGCAACGCTGGG CGATCCTTGGTCCCAACGGGTCAGGCAAGACAACATTGCTATCAATGGTCACATCCGACCATCCGCAAGCGTATG CACAGCCTGTCAAACTTTTCGGACGATCCAGGCTTCCGGAGCCTGGCAAACCAGGAATTTCAATCTTCGAACTGC AGTCCCGCATTGGACATTCATCACCGGAGATCCATGCGTTCTTCCCGCGTCAATTATCAATCCGTGCAGCACTTG AGAGTGCCTTCGCCGAGACCTTCCTGTCAAAGCCGAAGCTGAACATTCAACGCGATCAAGATATATCCGCAGTCC TGCAATTCTTCCAGCCCTATCTGGATCCAAATTACGCCCCGGGCGAGGTACCAAAAATATCGACTGCCGGTCTCC CGTCACTCACGAAGCGGACTCACGTCAAGCTAGGTACATACGCGTTAATGGATCACATTGTTGGATACGCAGATG AAATTCTCTTCAGTGAGCTCACCACCGCACAACAACGCATTGTGCTTTTCCTCCGGGCCATCGTCGCCAAGCCGG ACATTGTTATTCTCGACGAAGCTTTCTCGGGCCTATCTGCAGCACAGCGTAACGCGTGCTTGCATTTCTTAGAAA ATGGCGAGAGACCTAAACGCCGTGCACTTAATGTTCAAGCCCGCTCCTCGAAGGAGTCGGAATTCCGGTTCACTG GTCTCACGGAGGATCAAGCCTTGATCATGACTAGCCATGTGGCCGATGAGATTCCCGACAGCGTCCGCTACTACA TGCGACTGCCGTCTCCTCCAGGGACTTTCAATCCCCTTGATTTCCGCTTTGGTATTCTCCAATCTAAAACCACTC TGCGACACCCTCAGACCTGGGAGGCAGCCTGGTCTCCTCCCGACGCGTTCATCAAGCATGCCCGCAGGACGTGGC GCCGCAAGCAACATACTTTGCCGGTACAGGATATGACTGAATTCGAATGGTGGTCGATATAG |