© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7473.t1 |
| Gene name | |
| Location | scaffold_23:275487..278023 |
| Strand | - |
| Gene length (bp) | 2536 |
| Transcript length (bp) | 2175 |
| Coding sequence length (bp) | 2175 |
| Protein length (aa) | 725 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04818 | CID | CID domain | 2.5E-09 | 24 | 144 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.9E-05 | 493 | 551 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 26 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 40.72 | 24.72 | 56.72 |
| 5d_25C | Five days - 25 degrees Celsius | 52.60 | 31.97 | 73.23 |
| 7d_25C | Seven days - 25 degrees Celsius | 57.21 | 35.09 | 79.33 |
| 10d_25C | Ten days - 25 degrees Celsius | 66.48 | 40.68 | 92.28 |
| 7d_15C | Seven days - 15 degrees Celsius | 68.40 | 41.76 | 95.03 |
| 7d_30C | Seven days - 30 degrees Celsius | 58.72 | 36.00 | 81.45 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.276204 | no |
| 3d_25C | 7d_25C | 0.119073 | no |
| 3d_25C | 7d_15C | 0.007437 | yes |
| 3d_25C | 7d_30C | 0.084097 | no |
| 3d_25C | 10d_25C | 0.014676 | yes |
| 5d_25C | 7d_25C | 0.774668 | no |
| 5d_25C | 7d_15C | 0.258071 | no |
| 5d_25C | 7d_30C | 0.691426 | no |
| 5d_25C | 10d_25C | 0.313253 | no |
| 7d_25C | 7d_15C | 0.476807 | no |
| 7d_25C | 7d_30C | 0.936652 | no |
| 7d_25C | 10d_25C | 0.552307 | no |
| 7d_15C | 7d_30C | 0.554817 | no |
| 7d_15C | 10d_25C | 0.932626 | no |
| 7d_30C | 10d_25C | 0.632945 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7473.t1 MSSAVAELENLLQSMLALKPPGVSGSKIGGITNLCNANVQNESVLIQKIYTHFKKAPGSHKLGVLYVVDSVTRQW VEAARKAGQVPGGDAPDGTYAAGVKRVTDLLPILMTDIINNAPHDQKDKIKKLVDIWERGATFPAPMLASFKEKL NAAQNVESNTPEGSPAPNANPIGIPQQSATPDTSSILKALADMAKQNTTAPAAPSALAPANPLGAFNSASVTPAN DPSSHMAAAMNALGAGGPVATPFAGMAGMAQNPALQPQSQSGTPISMPAANPLTSMLPQAAQPAAPDSNAMAQQL QLLQMLAAQGIPQDQWGTALQLFSMTNNNAMGGMPGMPGMPGMPAMPAMPGGPMAGFNPMQGQNIGGWGHSDSQN KDDRGREYPRSPPTGYRRRSRSPGWDRRRTASPPRRRDSPVYGEYESPGRRGDPRDARGRRGNEYRQRSPPGGRG GRRRSPSPARNKDPNLPPPGPKFIEWDYSIGQGMIKVLSRTLFVGGVTSSEAHLRQLFGQFGIVQTCIVNVDKRH AFIKMVSRTDAMQARDGMESYRTGEMQLRTRWGVGFGPRDCSDYQTGVSIIPIERLTEADRKWMLSAEYGGTGGR PIESGMIVEEPDIEIGAGVSSKAISRRIATDTGGKRGPISTRTNPNPQDTRFGGRRPERDGYGGGPQMGGELDMP NMNNQGAAPAVPSYGFNFASMPMLPPGFMMGGGQPGMPGAQPPSGGQGN* |
| Coding | >Pro_DTO377G3_2|g7473.t1 ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGAATGAATCAGTTCTCATCCAGAAGATTTAC ACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAATGG GTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCAAG CGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGACAAGATC AAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGATGCTCGCTTCGTTCAAAGAGAAGCTG AACGCTGCTCAAAATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCCCG CAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCGCG CCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCAAT GATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGGGT ATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCGCG AACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGCTA CAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCATG ACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGCCC GGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGAAC AAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCTGG GATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTCGT CGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTGGC GGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTGAA TGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCTCC GAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCCAC GCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCGAG ATGCAACTCAGGACTCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATT ATTCCGATTGAGCGATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGT CCCATTGAATCTGGAATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGC CGCCGCATTGCCACTGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACT CGTTTCGGCGGTCGCCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCT AATATGAACAATCAGGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCC CCCGGATTCATGATGGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA |
| Transcript | >Pro_DTO377G3_2|g7473.t1 ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGAATGAATCAGTTCTCATCCAGAAGATTTAC ACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAATGG GTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCAAG CGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGACAAGATC AAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGATGCTCGCTTCGTTCAAAGAGAAGCTG AACGCTGCTCAAAATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCCCG CAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCGCG CCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCAAT GATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGGGT ATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCGCG AACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGCTA CAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCATG ACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGCCC GGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGAAC AAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCTGG GATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTCGT CGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTGGC GGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTGAA TGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCTCC GAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCCAC GCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCGAG ATGCAACTCAGGACTCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATT ATTCCGATTGAGCGATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGT CCCATTGAATCTGGAATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGC CGCCGCATTGCCACTGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACT CGTTTCGGCGGTCGCCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCT AATATGAACAATCAGGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCC CCCGGATTCATGATGGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA |
| Gene | >Pro_DTO377G3_2|g7473.t1 ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGGTACGCTTGTCCCCTTTGGTCGATTGATTC ATCTCATTGGTCCTGTGTGATCCATGATATGCTAACCCTACCCACAGAATGAATCAGTTCTCATCCAGAAGATTT ACACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAAT GGGTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCA AGCGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGTATGTA ATGAGACATCCCTGTATCATCAACCCCATATCCCAGGATCGCAGCCCTGGTGAGATAGTCAAGCTTCGCATATTG TATCCTTGCCTCGATGTACTTCGATCTGAAGATCCTGCTGCCCTGACCAAACCGTTTTGGACAAGTAACTGACAC ACATCTCGTCAATTTAGGACAAGATCAAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGA TGCTCGCTTCGTTCAAAGAGAAGCTGAACGCTGCTCAAAGTAAGTCCCCAATGATGTCAAGATATGCCACCAATA CTCACAATGCACTAGATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCC CGCAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCG CGCCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCA ATGATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGG GTATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCG CGAACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGC TACAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCA TGACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGC CCGGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGA ACAAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCT GGGATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTC GTCGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTG GCGGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTG AATGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCT CCGAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCC ACGCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCG AGATGCAACTCAGGGTAAGTCCTTCTCTTGTTTTTATTATCCATGGATCTTATCACTGACCTTATCAATATAGAC TCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATTATTCCGATTGAGCG ATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGTCCCATTGAATCTGG AATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGCCGCCGCATTGCCAC TGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACTCGTTTCGGCGGTCG CCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCTAATATGAACAATCA GGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCCCCCGGATTCATGAT GGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA |