Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7473.t1
Gene name
Locationscaffold_23:275487..278023
Strand-
Gene length (bp)2536
Transcript length (bp)2175
Coding sequence length (bp)2175
Protein length (aa) 725

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF04818 CID CID domain 2.5E-09 24 144
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2.9E-05 493 551

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 26 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 40.72 24.72 56.72
5d_25C Five days - 25 degrees Celsius 52.60 31.97 73.23
7d_25C Seven days - 25 degrees Celsius 57.21 35.09 79.33
10d_25C Ten days - 25 degrees Celsius 66.48 40.68 92.28
7d_15C Seven days - 15 degrees Celsius 68.40 41.76 95.03
7d_30C Seven days - 30 degrees Celsius 58.72 36.00 81.45

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.276204 no
3d_25C 7d_25C 0.119073 no
3d_25C 7d_15C 0.007437 yes
3d_25C 7d_30C 0.084097 no
3d_25C 10d_25C 0.014676 yes
5d_25C 7d_25C 0.774668 no
5d_25C 7d_15C 0.258071 no
5d_25C 7d_30C 0.691426 no
5d_25C 10d_25C 0.313253 no
7d_25C 7d_15C 0.476807 no
7d_25C 7d_30C 0.936652 no
7d_25C 10d_25C 0.552307 no
7d_15C 7d_30C 0.554817 no
7d_15C 10d_25C 0.932626 no
7d_30C 10d_25C 0.632945 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7473.t1
MSSAVAELENLLQSMLALKPPGVSGSKIGGITNLCNANVQNESVLIQKIYTHFKKAPGSHKLGVLYVVDSVTRQW
VEAARKAGQVPGGDAPDGTYAAGVKRVTDLLPILMTDIINNAPHDQKDKIKKLVDIWERGATFPAPMLASFKEKL
NAAQNVESNTPEGSPAPNANPIGIPQQSATPDTSSILKALADMAKQNTTAPAAPSALAPANPLGAFNSASVTPAN
DPSSHMAAAMNALGAGGPVATPFAGMAGMAQNPALQPQSQSGTPISMPAANPLTSMLPQAAQPAAPDSNAMAQQL
QLLQMLAAQGIPQDQWGTALQLFSMTNNNAMGGMPGMPGMPGMPAMPAMPGGPMAGFNPMQGQNIGGWGHSDSQN
KDDRGREYPRSPPTGYRRRSRSPGWDRRRTASPPRRRDSPVYGEYESPGRRGDPRDARGRRGNEYRQRSPPGGRG
GRRRSPSPARNKDPNLPPPGPKFIEWDYSIGQGMIKVLSRTLFVGGVTSSEAHLRQLFGQFGIVQTCIVNVDKRH
AFIKMVSRTDAMQARDGMESYRTGEMQLRTRWGVGFGPRDCSDYQTGVSIIPIERLTEADRKWMLSAEYGGTGGR
PIESGMIVEEPDIEIGAGVSSKAISRRIATDTGGKRGPISTRTNPNPQDTRFGGRRPERDGYGGGPQMGGELDMP
NMNNQGAAPAVPSYGFNFASMPMLPPGFMMGGGQPGMPGAQPPSGGQGN*
Coding >Pro_DTO377G3_2|g7473.t1
ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC
TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGAATGAATCAGTTCTCATCCAGAAGATTTAC
ACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAATGG
GTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCAAG
CGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGACAAGATC
AAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGATGCTCGCTTCGTTCAAAGAGAAGCTG
AACGCTGCTCAAAATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCCCG
CAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCGCG
CCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCAAT
GATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGGGT
ATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCGCG
AACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGCTA
CAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCATG
ACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGCCC
GGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGAAC
AAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCTGG
GATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTCGT
CGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTGGC
GGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTGAA
TGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCTCC
GAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCCAC
GCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCGAG
ATGCAACTCAGGACTCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATT
ATTCCGATTGAGCGATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGT
CCCATTGAATCTGGAATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGC
CGCCGCATTGCCACTGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACT
CGTTTCGGCGGTCGCCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCT
AATATGAACAATCAGGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCC
CCCGGATTCATGATGGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA
Transcript >Pro_DTO377G3_2|g7473.t1
ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC
TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGAATGAATCAGTTCTCATCCAGAAGATTTAC
ACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAATGG
GTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCAAG
CGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGACAAGATC
AAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGATGCTCGCTTCGTTCAAAGAGAAGCTG
AACGCTGCTCAAAATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCCCG
CAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCGCG
CCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCAAT
GATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGGGT
ATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCGCG
AACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGCTA
CAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCATG
ACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGCCC
GGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGAAC
AAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCTGG
GATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTCGT
CGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTGGC
GGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTGAA
TGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCTCC
GAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCCAC
GCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCGAG
ATGCAACTCAGGACTCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATT
ATTCCGATTGAGCGATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGT
CCCATTGAATCTGGAATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGC
CGCCGCATTGCCACTGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACT
CGTTTCGGCGGTCGCCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCT
AATATGAACAATCAGGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCC
CCCGGATTCATGATGGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA
Gene >Pro_DTO377G3_2|g7473.t1
ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC
TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGGTACGCTTGTCCCCTTTGGTCGATTGATTC
ATCTCATTGGTCCTGTGTGATCCATGATATGCTAACCCTACCCACAGAATGAATCAGTTCTCATCCAGAAGATTT
ACACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAAT
GGGTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCA
AGCGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGTATGTA
ATGAGACATCCCTGTATCATCAACCCCATATCCCAGGATCGCAGCCCTGGTGAGATAGTCAAGCTTCGCATATTG
TATCCTTGCCTCGATGTACTTCGATCTGAAGATCCTGCTGCCCTGACCAAACCGTTTTGGACAAGTAACTGACAC
ACATCTCGTCAATTTAGGACAAGATCAAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGA
TGCTCGCTTCGTTCAAAGAGAAGCTGAACGCTGCTCAAAGTAAGTCCCCAATGATGTCAAGATATGCCACCAATA
CTCACAATGCACTAGATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCC
CGCAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCG
CGCCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCA
ATGATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGG
GTATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCG
CGAACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGC
TACAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCA
TGACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGC
CCGGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGA
ACAAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCT
GGGATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTC
GTCGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTG
GCGGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTG
AATGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCT
CCGAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCC
ACGCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCG
AGATGCAACTCAGGGTAAGTCCTTCTCTTGTTTTTATTATCCATGGATCTTATCACTGACCTTATCAATATAGAC
TCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATTATTCCGATTGAGCG
ATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGTCCCATTGAATCTGG
AATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGCCGCCGCATTGCCAC
TGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACTCGTTTCGGCGGTCG
CCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCTAATATGAACAATCA
GGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCCCCCGGATTCATGAT
GGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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