Protein ID | Pro_DTO377G3_2|g7473.t1 |
Gene name | |
Location | scaffold_23:275487..278023 |
Strand | - |
Gene length (bp) | 2536 |
Transcript length (bp) | 2175 |
Coding sequence length (bp) | 2175 |
Protein length (aa) | 725 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF04818 | CTD_bind | RNA polymerase II-binding domain. | 1.9E-07 | 61 | 138 |
PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 2.1E-05 | 493 | 551 |
GO Term | Description | Terminal node |
---|---|---|
GO:0003676 | nucleic acid binding | Yes |
GO:0097159 | organic cyclic compound binding | No |
GO:1901363 | heterocyclic compound binding | No |
GO:0005488 | binding | No |
GO:0003674 | molecular_function | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 26 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g7473.t1 MSSAVAELENLLQSMLALKPPGVSGSKIGGITNLCNANVQNESVLIQKIYTHFKKAPGSHKLGVLYVVDSVTRQW VEAARKAGQVPGGDAPDGTYAAGVKRVTDLLPILMTDIINNAPHDQKDKIKKLVDIWERGATFPAPMLASFKEKL NAAQNVESNTPEGSPAPNANPIGIPQQSATPDTSSILKALADMAKQNTTAPAAPSALAPANPLGAFNSASVTPAN DPSSHMAAAMNALGAGGPVATPFAGMAGMAQNPALQPQSQSGTPISMPAANPLTSMLPQAAQPAAPDSNAMAQQL QLLQMLAAQGIPQDQWGTALQLFSMTNNNAMGGMPGMPGMPGMPAMPAMPGGPMAGFNPMQGQNIGGWGHSDSQN KDDRGREYPRSPPTGYRRRSRSPGWDRRRTASPPRRRDSPVYGEYESPGRRGDPRDARGRRGNEYRQRSPPGGRG GRRRSPSPARNKDPNLPPPGPKFIEWDYSIGQGMIKVLSRTLFVGGVTSSEAHLRQLFGQFGIVQTCIVNVDKRH AFIKMVSRTDAMQARDGMESYRTGEMQLRTRWGVGFGPRDCSDYQTGVSIIPIERLTEADRKWMLSAEYGGTGGR PIESGMIVEEPDIEIGAGVSSKAISRRIATDTGGKRGPISTRTNPNPQDTRFGGRRPERDGYGGGPQMGGELDMP NMNNQGAAPAVPSYGFNFASMPMLPPGFMMGGGQPGMPGAQPPSGGQGN* |
Coding | >Pro_DTO377G3_2|g7473.t1 ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGAATGAATCAGTTCTCATCCAGAAGATTTAC ACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAATGG GTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCAAG CGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGACAAGATC AAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGATGCTCGCTTCGTTCAAAGAGAAGCTG AACGCTGCTCAAAATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCCCG CAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCGCG CCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCAAT GATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGGGT ATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCGCG AACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGCTA CAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCATG ACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGCCC GGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGAAC AAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCTGG GATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTCGT CGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTGGC GGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTGAA TGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCTCC GAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCCAC GCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCGAG ATGCAACTCAGGACTCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATT ATTCCGATTGAGCGATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGT CCCATTGAATCTGGAATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGC CGCCGCATTGCCACTGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACT CGTTTCGGCGGTCGCCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCT AATATGAACAATCAGGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCC CCCGGATTCATGATGGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA |
Transcript | >Pro_DTO377G3_2|g7473.t1 ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGAATGAATCAGTTCTCATCCAGAAGATTTAC ACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAATGG GTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCAAG CGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGACAAGATC AAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGATGCTCGCTTCGTTCAAAGAGAAGCTG AACGCTGCTCAAAATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCCCG CAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCGCG CCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCAAT GATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGGGT ATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCGCG AACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGCTA CAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCATG ACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGCCC GGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGAAC AAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCTGG GATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTCGT CGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTGGC GGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTGAA TGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCTCC GAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCCAC GCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCGAG ATGCAACTCAGGACTCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATT ATTCCGATTGAGCGATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGT CCCATTGAATCTGGAATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGC CGCCGCATTGCCACTGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACT CGTTTCGGCGGTCGCCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCT AATATGAACAATCAGGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCC CCCGGATTCATGATGGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA |
Gene | >Pro_DTO377G3_2|g7473.t1 ATGTCTTCTGCAGTAGCTGAACTGGAGAACCTTCTCCAATCCATGCTGGCCCTCAAGCCGCCTGGCGTATCTGGC TCAAAGATTGGTGGCATCACAAACTTGTGCAATGCCAACGTGCAGGTACGCTTGTCCCCTTTGGTCGATTGATTC ATCTCATTGGTCCTGTGTGATCCATGATATGCTAACCCTACCCACAGAATGAATCAGTTCTCATCCAGAAGATTT ACACTCACTTCAAGAAGGCCCCCGGCTCTCACAAGCTGGGTGTGCTTTATGTGGTAGACTCAGTAACTCGCCAAT GGGTAGAGGCTGCGCGCAAGGCCGGCCAGGTTCCTGGCGGTGATGCGCCGGATGGAACTTACGCCGCTGGTGTCA AGCGTGTCACTGATCTCTTGCCCATCTTGATGACAGATATCATCAATAACGCCCCCCATGACCAAAAGGTATGTA ATGAGACATCCCTGTATCATCAACCCCATATCCCAGGATCGCAGCCCTGGTGAGATAGTCAAGCTTCGCATATTG TATCCTTGCCTCGATGTACTTCGATCTGAAGATCCTGCTGCCCTGACCAAACCGTTTTGGACAAGTAACTGACAC ACATCTCGTCAATTTAGGACAAGATCAAAAAGCTAGTCGACATCTGGGAACGTGGTGCGACTTTTCCGGCCCCGA TGCTCGCTTCGTTCAAAGAGAAGCTGAACGCTGCTCAAAGTAAGTCCCCAATGATGTCAAGATATGCCACCAATA CTCACAATGCACTAGATGTCGAATCGAACACCCCCGAAGGATCCCCTGCACCGAACGCCAACCCGATCGGAATCC CGCAACAATCGGCGACACCTGATACCTCGAGCATCCTGAAAGCTTTGGCCGATATGGCCAAGCAGAACACTACCG CGCCTGCTGCACCTTCCGCACTTGCGCCGGCCAACCCTCTGGGTGCTTTCAACTCGGCCTCTGTGACCCCTGCCA ATGATCCAAGTTCGCATATGGCTGCTGCCATGAATGCACTCGGCGCCGGTGGACCTGTCGCGACTCCCTTTGCGG GTATGGCCGGCATGGCTCAGAACCCGGCTCTCCAGCCGCAGAGTCAAAGTGGAACTCCGATCTCGATGCCCGCCG CGAACCCGCTGACCTCAATGCTTCCTCAGGCTGCGCAACCCGCCGCACCTGACTCAAACGCCATGGCACAGCAGC TACAACTTCTCCAGATGCTCGCTGCTCAGGGAATCCCCCAGGACCAGTGGGGCACTGCCTTGCAGCTCTTCAGCA TGACCAACAACAATGCCATGGGCGGTATGCCGGGTATGCCTGGGATGCCTGGAATGCCTGCGATGCCTGCGATGC CCGGAGGACCGATGGCTGGATTCAACCCGATGCAAGGACAGAACATTGGTGGATGGGGTCACTCGGACTCCCAGA ACAAGGACGATCGTGGCCGTGAATACCCTCGCTCGCCGCCCACTGGATATCGTCGTCGTTCTCGTTCTCCGGGCT GGGATAGACGCCGTACTGCTTCGCCCCCTCGCCGTCGTGACAGCCCTGTCTATGGAGAATATGAATCGCCTGGTC GTCGTGGAGACCCGCGTGATGCTCGTGGCCGTCGTGGTAATGAGTATCGCCAGCGTAGCCCCCCTGGTGGCCGTG GCGGTAGACGTCGCTCGCCTTCGCCTGCTCGTAACAAGGATCCCAACCTCCCTCCCCCTGGACCCAAGTTCATTG AATGGGACTATTCGATCGGCCAGGGTATGATTAAAGTCTTGAGCCGAACTCTTTTCGTTGGTGGTGTTACCTCCT CCGAGGCCCACCTGCGTCAACTCTTTGGTCAGTTTGGAATTGTTCAGACTTGCATTGTCAATGTCGACAAGCGCC ACGCTTTTATCAAGATGGTTAGCCGGACCGATGCCATGCAGGCACGTGATGGAATGGAATCTTACCGTACTGGCG AGATGCAACTCAGGGTAAGTCCTTCTCTTGTTTTTATTATCCATGGATCTTATCACTGACCTTATCAATATAGAC TCGTTGGGGTGTTGGCTTTGGCCCCCGTGACTGCAGCGATTACCAGACTGGAGTCAGCATTATTCCGATTGAGCG ATTGACCGAGGCTGACCGCAAGTGGATGCTTTCGGCAGAGTATGGTGGAACTGGTGGACGTCCCATTGAATCTGG AATGATTGTTGAAGAGCCCGATATTGAAATCGGCGCAGGTGTCTCCTCCAAGGCTATCAGCCGCCGCATTGCCAC TGACACTGGCGGCAAGCGGGGCCCAATTTCCACTCGCACTAATCCCAATCCCCAGGACACTCGTTTCGGCGGTCG CCGTCCTGAGCGTGATGGATACGGTGGCGGTCCTCAGATGGGTGGTGAACTTGACATGCCTAATATGAACAATCA GGGAGCCGCACCTGCAGTTCCTTCCTATGGTTTCAACTTCGCTAGCATGCCCATGTTGCCCCCCGGATTCATGAT GGGTGGTGGTCAGCCCGGTATGCCCGGTGCGCAGCCTCCTTCCGGTGGCCAGGGCAACTGA |