© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7464.t1 |
| Gene name | |
| Location | scaffold_23:250678..252405 |
| Strand | - |
| Gene length (bp) | 1727 |
| Transcript length (bp) | 1668 |
| Coding sequence length (bp) | 1668 |
| Protein length (aa) | 556 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00324 | AA_permease | Amino acid permease | 1.7E-134 | 51 | 516 |
| PF13520 | AA_permease_2 | Amino acid permease | 3.2E-32 | 54 | 504 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0055085 | transmembrane transport | Yes |
| GO:0022857 | transmembrane transporter activity | Yes |
| GO:0008150 | biological_process | No |
| GO:0006810 | transport | No |
| GO:0009987 | cellular process | No |
| GO:0051234 | establishment of localization | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005215 | transporter activity | No |
| GO:0003674 | molecular_function | No |
| GO:0005575 | cellular_component | No |
| GO:0051179 | localization | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 20 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 52 | 74 | 22 |
| 2 | 81 | 103 | 22 |
| 3 | 129 | 151 | 22 |
| 4 | 158 | 180 | 22 |
| 5 | 190 | 212 | 22 |
| 6 | 283 | 302 | 19 |
| 7 | 334 | 356 | 22 |
| 8 | 387 | 406 | 19 |
| 9 | 416 | 438 | 22 |
| 10 | 462 | 484 | 22 |
| 11 | 494 | 513 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 7.13 | 2.73 | 11.54 |
| 5d_25C | Five days - 25 degrees Celsius | 3.63 | 1.01 | 6.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 2.93 | 0.79 | 5.06 |
| 10d_25C | Ten days - 25 degrees Celsius | 2.02 | 0.34 | 3.69 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.63 | 1.48 | 7.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 3.99 | 1.24 | 6.74 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.067601 | no |
| 3d_25C | 7d_25C | 0.016361 | yes |
| 3d_25C | 7d_15C | 0.253902 | no |
| 3d_25C | 7d_30C | 0.104886 | no |
| 3d_25C | 10d_25C | 0.002761 | yes |
| 5d_25C | 7d_25C | 0.684531 | no |
| 5d_25C | 7d_15C | 0.617532 | no |
| 5d_25C | 7d_30C | 0.870969 | no |
| 5d_25C | 10d_25C | 0.205936 | no |
| 7d_25C | 7d_15C | 0.274443 | no |
| 7d_25C | 7d_30C | 0.500310 | no |
| 7d_25C | 10d_25C | 0.463406 | no |
| 7d_15C | 7d_30C | 0.775863 | no |
| 7d_15C | 10d_25C | 0.054049 | no |
| 7d_30C | 10d_25C | 0.120895 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7464.t1 MADKSEGKMSGELPVQVQAQSIAYDIDYEKFGAQREANPLPDLKRQLKSRHLQMIAIGGTIGTGLFIGSGTAIAH GGPVGALIAYIFVGSIVYSVMTALGEIATYIPIPGAFTSYAARLIDPSLGFAMGWIYWFSWASTFALELTATGLI IQFWDSNIPIAIFIGVFWVVIIVFNMMPVAFYGEIEFWFASIKVITVIGFMIFAICMNAGVGKEGYLGFRYWVHP GPFVPYLIEGNDSLAKFVGFWSTLIQAGFSYQGTELVGIAAGETENPRKTVPSAIRKTFFRIVFFFILTIFFLGI LVPSSDPGLLASQGDGASAQNANASPFVIAANRAGVAALPSIINAVLLTVVLSAANSNVYSGSRILVGLAQEGFA PHWFKITSKHGVPYYSVLFTAAFGLLGFLNVSDAGSTVFTWLLQISGVAGFITWSSLNACHLAFQRALKARNISR DILPYKAIWQPWYSWYGLFFNCLIILTQGFTAFIPNFQVKDFFINYLSLILFVVLYAGHRIIYRPPFVKPIEADL DTGRTTADNETWETIEPTTWQGKAWKWICD* |
| Coding | >Pro_DTO377G3_2|g7464.t1 ATGGCTGACAAGTCAGAGGGAAAGATGAGCGGTGAATTGCCTGTGCAAGTCCAAGCACAGAGCATTGCCTATGAT ATCGACTATGAGAAGTTCGGTGCCCAGCGCGAGGCGAACCCGCTGCCGGATCTCAAGCGGCAGCTGAAGAGCAGA CATTTACAGATGATTGCCATTGGCGGCACAATAGGTACCGGTTTATTCATTGGTAGCGGCACCGCCATTGCTCAC GGAGGCCCCGTGGGCGCTCTCATCGCTTACATCTTCGTTGGATCGATCGTGTACTCGGTCATGACCGCCCTCGGG GAGATCGCAACATATATTCCGATTCCTGGCGCCTTCACCTCGTACGCTGCTCGCCTGATTGACCCTAGTTTGGGC TTTGCTATGGGTTGGATCTATTGGTTCTCATGGGCATCAACATTTGCGCTGGAATTAACTGCAACCGGTTTGATT ATCCAGTTCTGGGACAGCAACATTCCCATCGCTATCTTCATCGGCGTGTTCTGGGTCGTCATTATCGTTTTCAAC ATGATGCCTGTGGCCTTTTATGGTGAAATCGAGTTTTGGTTCGCGAGTATCAAGGTCATTACCGTGATTGGCTTC ATGATCTTCGCGATTTGTATGAATGCCGGTGTCGGTAAAGAAGGGTATCTCGGTTTCCGATACTGGGTGCACCCA GGTCCATTCGTCCCCTACTTGATTGAAGGAAACGATTCGTTGGCCAAGTTTGTTGGATTCTGGTCGACGCTTATT CAGGCCGGATTTTCCTACCAGGGAACCGAACTGGTTGGTATTGCGGCCGGTGAGACCGAGAACCCTCGCAAGACC GTCCCATCTGCTATTCGCAAAACCTTCTTCCGTATCGTCTTCTTCTTCATCCTGACAATCTTCTTCCTCGGAATT CTCGTGCCCTCTAGCGACCCCGGTCTATTGGCTAGTCAGGGAGATGGTGCTTCTGCTCAGAACGCCAACGCTTCG CCCTTCGTCATTGCCGCCAACCGTGCCGGTGTCGCGGCTCTCCCCAGTATCATCAACGCCGTTCTTCTAACCGTG GTACTTTCAGCGGCCAACTCCAACGTCTACAGCGGGAGCCGTATTCTGGTGGGTCTGGCCCAGGAAGGTTTCGCC CCTCATTGGTTCAAGATTACCAGCAAGCACGGTGTCCCTTACTACAGTGTGCTCTTCACGGCGGCCTTTGGTCTG CTCGGATTCTTGAACGTCTCCGATGCAGGTAGCACAGTGTTCACCTGGTTACTCCAGATCTCGGGTGTGGCTGGT TTCATCACCTGGTCTTCACTGAACGCCTGCCACCTTGCCTTCCAACGGGCGCTTAAGGCTCGTAACATCTCTCGG GATATCCTGCCTTACAAGGCCATCTGGCAGCCCTGGTACTCGTGGTATGGTCTGTTCTTCAATTGTCTGATCATT CTCACCCAGGGATTCACTGCCTTTATCCCGAACTTCCAAGTCAAGGATTTCTTCATCAACTACCTGAGCTTGATT TTGTTCGTGGTGCTATATGCGGGACACAGGATCATTTACCGACCTCCCTTTGTCAAGCCCATTGAAGCTGACCTG GATACCGGTCGTACCACTGCTGATAATGAGACATGGGAGACTATCGAGCCAACCACATGGCAAGGCAAGGCATGG AAGTGGATTTGCGATTAA |
| Transcript | >Pro_DTO377G3_2|g7464.t1 ATGGCTGACAAGTCAGAGGGAAAGATGAGCGGTGAATTGCCTGTGCAAGTCCAAGCACAGAGCATTGCCTATGAT ATCGACTATGAGAAGTTCGGTGCCCAGCGCGAGGCGAACCCGCTGCCGGATCTCAAGCGGCAGCTGAAGAGCAGA CATTTACAGATGATTGCCATTGGCGGCACAATAGGTACCGGTTTATTCATTGGTAGCGGCACCGCCATTGCTCAC GGAGGCCCCGTGGGCGCTCTCATCGCTTACATCTTCGTTGGATCGATCGTGTACTCGGTCATGACCGCCCTCGGG GAGATCGCAACATATATTCCGATTCCTGGCGCCTTCACCTCGTACGCTGCTCGCCTGATTGACCCTAGTTTGGGC TTTGCTATGGGTTGGATCTATTGGTTCTCATGGGCATCAACATTTGCGCTGGAATTAACTGCAACCGGTTTGATT ATCCAGTTCTGGGACAGCAACATTCCCATCGCTATCTTCATCGGCGTGTTCTGGGTCGTCATTATCGTTTTCAAC ATGATGCCTGTGGCCTTTTATGGTGAAATCGAGTTTTGGTTCGCGAGTATCAAGGTCATTACCGTGATTGGCTTC ATGATCTTCGCGATTTGTATGAATGCCGGTGTCGGTAAAGAAGGGTATCTCGGTTTCCGATACTGGGTGCACCCA GGTCCATTCGTCCCCTACTTGATTGAAGGAAACGATTCGTTGGCCAAGTTTGTTGGATTCTGGTCGACGCTTATT CAGGCCGGATTTTCCTACCAGGGAACCGAACTGGTTGGTATTGCGGCCGGTGAGACCGAGAACCCTCGCAAGACC GTCCCATCTGCTATTCGCAAAACCTTCTTCCGTATCGTCTTCTTCTTCATCCTGACAATCTTCTTCCTCGGAATT CTCGTGCCCTCTAGCGACCCCGGTCTATTGGCTAGTCAGGGAGATGGTGCTTCTGCTCAGAACGCCAACGCTTCG CCCTTCGTCATTGCCGCCAACCGTGCCGGTGTCGCGGCTCTCCCCAGTATCATCAACGCCGTTCTTCTAACCGTG GTACTTTCAGCGGCCAACTCCAACGTCTACAGCGGGAGCCGTATTCTGGTGGGTCTGGCCCAGGAAGGTTTCGCC CCTCATTGGTTCAAGATTACCAGCAAGCACGGTGTCCCTTACTACAGTGTGCTCTTCACGGCGGCCTTTGGTCTG CTCGGATTCTTGAACGTCTCCGATGCAGGTAGCACAGTGTTCACCTGGTTACTCCAGATCTCGGGTGTGGCTGGT TTCATCACCTGGTCTTCACTGAACGCCTGCCACCTTGCCTTCCAACGGGCGCTTAAGGCTCGTAACATCTCTCGG GATATCCTGCCTTACAAGGCCATCTGGCAGCCCTGGTACTCGTGGTATGGTCTGTTCTTCAATTGTCTGATCATT CTCACCCAGGGATTCACTGCCTTTATCCCGAACTTCCAAGTCAAGGATTTCTTCATCAACTACCTGAGCTTGATT TTGTTCGTGGTGCTATATGCGGGACACAGGATCATTTACCGACCTCCCTTTGTCAAGCCCATTGAAGCTGACCTG GATACCGGTCGTACCACTGCTGATAATGAGACATGGGAGACTATCGAGCCAACCACATGGCAAGGCAAGGCATGG AAGTGGATTTGCGATTAA |
| Gene | >Pro_DTO377G3_2|g7464.t1 ATGGCTGACAAGTCAGAGGGAAAGATGAGCGGTGAATTGCCTGTGCAAGTCCAAGCACAGAGCATTGCCTATGAT ATCGACTATGAGAAGTTCGGTGCCCAGCGCGAGGCGAACCCGCTGCCGGATCTCAAGCGGCAGCTGAAGAGCAGA CATTTACAGATGATTGCCATTGGTGAGTTATGATGAGCTATATATCATCGATCAGGATCTTCAGGCTAATGCTCT TCGAAGGCGGCACAATAGGTACCGGTTTATTCATTGGTAGCGGCACCGCCATTGCTCACGGAGGCCCCGTGGGCG CTCTCATCGCTTACATCTTCGTTGGATCGATCGTGTACTCGGTCATGACCGCCCTCGGGGAGATCGCAACATATA TTCCGATTCCTGGCGCCTTCACCTCGTACGCTGCTCGCCTGATTGACCCTAGTTTGGGCTTTGCTATGGGTTGGA TCTATTGGTTCTCATGGGCATCAACATTTGCGCTGGAATTAACTGCAACCGGTTTGATTATCCAGTTCTGGGACA GCAACATTCCCATCGCTATCTTCATCGGCGTGTTCTGGGTCGTCATTATCGTTTTCAACATGATGCCTGTGGCCT TTTATGGTGAAATCGAGTTTTGGTTCGCGAGTATCAAGGTCATTACCGTGATTGGCTTCATGATCTTCGCGATTT GTATGAATGCCGGTGTCGGTAAAGAAGGGTATCTCGGTTTCCGATACTGGGTGCACCCAGGTCCATTCGTCCCCT ACTTGATTGAAGGAAACGATTCGTTGGCCAAGTTTGTTGGATTCTGGTCGACGCTTATTCAGGCCGGATTTTCCT ACCAGGGAACCGAACTGGTTGGTATTGCGGCCGGTGAGACCGAGAACCCTCGCAAGACCGTCCCATCTGCTATTC GCAAAACCTTCTTCCGTATCGTCTTCTTCTTCATCCTGACAATCTTCTTCCTCGGAATTCTCGTGCCCTCTAGCG ACCCCGGTCTATTGGCTAGTCAGGGAGATGGTGCTTCTGCTCAGAACGCCAACGCTTCGCCCTTCGTCATTGCCG CCAACCGTGCCGGTGTCGCGGCTCTCCCCAGTATCATCAACGCCGTTCTTCTAACCGTGGTACTTTCAGCGGCCA ACTCCAACGTCTACAGCGGGAGCCGTATTCTGGTGGGTCTGGCCCAGGAAGGTTTCGCCCCTCATTGGTTCAAGA TTACCAGCAAGCACGGTGTCCCTTACTACAGTGTGCTCTTCACGGCGGCCTTTGGTCTGCTCGGATTCTTGAACG TCTCCGATGCAGGTAGCACAGTGTTCACCTGGTTACTCCAGATCTCGGGTGTGGCTGGTTTCATCACCTGGTCTT CACTGAACGCCTGCCACCTTGCCTTCCAACGGGCGCTTAAGGCTCGTAACATCTCTCGGGATATCCTGCCTTACA AGGCCATCTGGCAGCCCTGGTACTCGTGGTATGGTCTGTTCTTCAATTGTCTGATCATTCTCACCCAGGGATTCA CTGCCTTTATCCCGAACTTCCAAGTCAAGGATTTCTTCATCAACTACCTGAGCTTGATTTTGTTCGTGGTGCTAT ATGCGGGACACAGGATCATTTACCGACCTCCCTTTGTCAAGCCCATTGAAGCTGACCTGGATACCGGTCGTACCA CTGCTGATAATGAGACATGGGAGACTATCGAGCCAACCACATGGCAAGGCAAGGCATGGAAGTGGATTTGCGATT AA |