© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7454.t1 |
| Gene name | |
| Location | scaffold_23:212290..213931 |
| Strand | + |
| Gene length (bp) | 1641 |
| Transcript length (bp) | 1581 |
| Coding sequence length (bp) | 1581 |
| Protein length (aa) | 527 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02136 | NTF2 | Nuclear transport factor 2 (NTF2) domain | 7.2E-26 | 62 | 177 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.3E-07 | 395 | 455 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 42 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 18.61 | 9.35 | 27.87 |
| 5d_25C | Five days - 25 degrees Celsius | 18.43 | 9.25 | 27.61 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.65 | 11.92 | 33.39 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.85 | 16.66 | 43.03 |
| 7d_15C | Seven days - 15 degrees Celsius | 15.37 | 7.32 | 23.43 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.45 | 10.50 | 30.39 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.982417 | no |
| 3d_25C | 7d_25C | 0.545748 | no |
| 3d_25C | 7d_15C | 0.575760 | no |
| 3d_25C | 7d_30C | 0.805491 | no |
| 3d_25C | 10d_25C | 0.066129 | no |
| 5d_25C | 7d_25C | 0.520444 | no |
| 5d_25C | 7d_15C | 0.600085 | no |
| 5d_25C | 7d_30C | 0.783421 | no |
| 5d_25C | 10d_25C | 0.059176 | no |
| 7d_25C | 7d_15C | 0.165132 | no |
| 7d_25C | 7d_30C | 0.779257 | no |
| 7d_25C | 10d_25C | 0.315189 | no |
| 7d_15C | 7d_30C | 0.356480 | no |
| 7d_15C | 10d_25C | 0.008133 | yes |
| 7d_30C | 10d_25C | 0.149271 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7454.t1 MADMTQVPINGNYPAQHGYPESYNHASVTMNTAASFQPAQSSTPTTVTPTDQQKNEISKDEVGWYFVEQFYTTMS RNPDKLHLFYSRRSQLVFGTEAESVPVTVGTKAINEKLSSLKFQECKVRVLNVDSQASFDNILVSVIGEISNNSE PSRKFVQTFVLAEQPNGYYVLNDIFRYMAEEPEEEPEQPTPAAPTAEAPEAVAEVPAEEHQVIDEVTLSDVDEKL EEVEANEQVEEPKEAAPQTNGVPAEEAAPAAVLAVEAENLNDEEPATPEPSPIAEKGEVPEKETSTAPAAPKTWA SIATTSFAAKAAAAAKASAAQAAPAAQVTPAVPTAPKSAAPAAPAAPTAQPAAATPAPAEVARSPEAPSTEAGWQ TAGDGHKKSQPRVEETVLAYIKNVNDKVDASLLKQTLARFGKLKYFDVSRPKNCAFVEFNEPAGYTAAVAANPHQ IGSEQILVEERRPRGNAYGSNAFPAGRGGGAGRGRGDRAGSQGRGGFQREGRGGFTPRGRGGNVAAKGRPSQPQA A* |
| Coding | >Pro_DTO377G3_2|g7454.t1 ATGGCCGATATGACTCAGGTTCCTATCAATGGTAACTACCCTGCTCAGCACGGTTACCCTGAATCTTACAACCAT GCATCTGTCACTATGAACACTGCTGCCAGCTTCCAGCCTGCGCAGTCCTCCACCCCGACTACCGTCACTCCCACC GACCAGCAGAAGAACGAGATCTCCAAGGATGAGGTGGGCTGGTACTTCGTCGAGCAGTTCTACACCACCATGAGC CGCAACCCCGACAAGCTTCACTTGTTCTACTCTCGCCGCTCTCAGTTGGTCTTCGGCACTGAGGCTGAGTCGGTT CCCGTCACCGTTGGTACTAAGGCCATCAACGAGAAGCTTAGCTCCTTGAAGTTCCAGGAGTGCAAAGTGCGCGTC CTGAATGTCGATTCTCAGGCGTCTTTCGACAACATCCTGGTCTCAGTCATTGGTGAGATCTCGAACAACTCCGAG CCGTCCCGCAAGTTCGTGCAGACTTTCGTCCTCGCCGAGCAGCCCAACGGCTACTATGTGCTTAACGACATCTTC CGGTACATGGCCGAAGAGCCAGAAGAAGAACCCGAGCAGCCCACCCCGGCTGCGCCTACTGCTGAAGCTCCTGAG GCTGTTGCCGAGGTTCCCGCTGAGGAGCACCAGGTGATTGATGAAGTAACTCTCTCAGACGTCGATGAGAAGCTT GAGGAGGTCGAGGCCAACGAGCAGGTTGAGGAGCCCAAGGAGGCCGCTCCTCAGACTAACGGTGTCCCCGCTGAG GAGGCGGCTCCAGCTGCGGTTCTTGCCGTCGAGGCTGAAAACCTGAACGACGAGGAGCCCGCCACCCCTGAGCCC TCTCCTATTGCCGAGAAGGGGGAGGTTCCTGAGAAGGAGACCTCAACCGCTCCCGCTGCTCCTAAGACCTGGGCT AGCATTGCGACTACCTCTTTCGCAGCTAAGGCCGCTGCTGCCGCCAAGGCTTCGGCTGCCCAGGCTGCTCCTGCT GCTCAGGTTACCCCTGCTGTTCCTACTGCTCCCAAGTCTGCTGCTCCCGCTGCTCCCGCTGCCCCTACCGCTCAG CCCGCTGCTGCCACCCCCGCCCCTGCGGAGGTTGCCCGTTCCCCGGAGGCCCCTTCCACCGAAGCCGGCTGGCAG ACGGCCGGCGATGGCCACAAGAAGTCGCAGCCCCGTGTTGAGGAGACCGTCCTCGCCTATATCAAGAACGTCAAC GACAAGGTTGATGCCAGCCTGCTTAAGCAGACCCTGGCCCGTTTCGGCAAGCTGAAGTACTTCGATGTCAGCCGC CCCAAGAACTGTGCCTTTGTTGAATTCAACGAGCCTGCCGGTTATACCGCTGCCGTTGCTGCCAACCCCCACCAG ATTGGCAGCGAGCAGATCCTCGTCGAGGAGCGCCGCCCACGTGGTAACGCTTACGGTAGCAACGCTTTCCCTGCC GGCCGTGGTGGTGGTGCGGGTCGTGGTCGCGGTGACCGCGCCGGCAGCCAGGGCCGTGGTGGCTTCCAGCGTGAA GGCCGCGGCGGTTTCACTCCTCGTGGCCGTGGTGGCAACGTTGCCGCCAAAGGTCGCCCTAGCCAGCCCCAAGCT GCTTAA |
| Transcript | >Pro_DTO377G3_2|g7454.t1 ATGGCCGATATGACTCAGGTTCCTATCAATGGTAACTACCCTGCTCAGCACGGTTACCCTGAATCTTACAACCAT GCATCTGTCACTATGAACACTGCTGCCAGCTTCCAGCCTGCGCAGTCCTCCACCCCGACTACCGTCACTCCCACC GACCAGCAGAAGAACGAGATCTCCAAGGATGAGGTGGGCTGGTACTTCGTCGAGCAGTTCTACACCACCATGAGC CGCAACCCCGACAAGCTTCACTTGTTCTACTCTCGCCGCTCTCAGTTGGTCTTCGGCACTGAGGCTGAGTCGGTT CCCGTCACCGTTGGTACTAAGGCCATCAACGAGAAGCTTAGCTCCTTGAAGTTCCAGGAGTGCAAAGTGCGCGTC CTGAATGTCGATTCTCAGGCGTCTTTCGACAACATCCTGGTCTCAGTCATTGGTGAGATCTCGAACAACTCCGAG CCGTCCCGCAAGTTCGTGCAGACTTTCGTCCTCGCCGAGCAGCCCAACGGCTACTATGTGCTTAACGACATCTTC CGGTACATGGCCGAAGAGCCAGAAGAAGAACCCGAGCAGCCCACCCCGGCTGCGCCTACTGCTGAAGCTCCTGAG GCTGTTGCCGAGGTTCCCGCTGAGGAGCACCAGGTGATTGATGAAGTAACTCTCTCAGACGTCGATGAGAAGCTT GAGGAGGTCGAGGCCAACGAGCAGGTTGAGGAGCCCAAGGAGGCCGCTCCTCAGACTAACGGTGTCCCCGCTGAG GAGGCGGCTCCAGCTGCGGTTCTTGCCGTCGAGGCTGAAAACCTGAACGACGAGGAGCCCGCCACCCCTGAGCCC TCTCCTATTGCCGAGAAGGGGGAGGTTCCTGAGAAGGAGACCTCAACCGCTCCCGCTGCTCCTAAGACCTGGGCT AGCATTGCGACTACCTCTTTCGCAGCTAAGGCCGCTGCTGCCGCCAAGGCTTCGGCTGCCCAGGCTGCTCCTGCT GCTCAGGTTACCCCTGCTGTTCCTACTGCTCCCAAGTCTGCTGCTCCCGCTGCTCCCGCTGCCCCTACCGCTCAG CCCGCTGCTGCCACCCCCGCCCCTGCGGAGGTTGCCCGTTCCCCGGAGGCCCCTTCCACCGAAGCCGGCTGGCAG ACGGCCGGCGATGGCCACAAGAAGTCGCAGCCCCGTGTTGAGGAGACCGTCCTCGCCTATATCAAGAACGTCAAC GACAAGGTTGATGCCAGCCTGCTTAAGCAGACCCTGGCCCGTTTCGGCAAGCTGAAGTACTTCGATGTCAGCCGC CCCAAGAACTGTGCCTTTGTTGAATTCAACGAGCCTGCCGGTTATACCGCTGCCGTTGCTGCCAACCCCCACCAG ATTGGCAGCGAGCAGATCCTCGTCGAGGAGCGCCGCCCACGTGGTAACGCTTACGGTAGCAACGCTTTCCCTGCC GGCCGTGGTGGTGGTGCGGGTCGTGGTCGCGGTGACCGCGCCGGCAGCCAGGGCCGTGGTGGCTTCCAGCGTGAA GGCCGCGGCGGTTTCACTCCTCGTGGCCGTGGTGGCAACGTTGCCGCCAAAGGTCGCCCTAGCCAGCCCCAAGCT GCTTAA |
| Gene | >Pro_DTO377G3_2|g7454.t1 ATGGCCGATATGACTCAGGTTCCTATCAATGGTAACTACCCTGCTCAGCACGGTTACCCTGAATCTTACAACCAT GCATCTGTCACTATGAACACTGCTGCCAGCTTCCAGCCTGCGCAGTCCTCCACCCCGACTACCGTCACTCCCACC GACCAGCAGAAGAACGAGATCTCCAAGGATGAGGTGGGCTGGTACTTCGTCGAGCAGTTCTACACCACCATGAGC CGCAACCCCGACAAGCTTCACTTGTTCTACTCTCGCCGCTCTCAGTTGGTCTTCGGCACTGAGGCTGAGTCGGTT CCCGTCACCGTTGGTACTAAGGTGAGTTAGATTCGATTCCTCAATGTGAATATCGCCTAACCACGCACCCCACTC CCATAGGCCATCAACGAGAAGCTTAGCTCCTTGAAGTTCCAGGAGTGCAAAGTGCGCGTCCTGAATGTCGATTCT CAGGCGTCTTTCGACAACATCCTGGTCTCAGTCATTGGTGAGATCTCGAACAACTCCGAGCCGTCCCGCAAGTTC GTGCAGACTTTCGTCCTCGCCGAGCAGCCCAACGGCTACTATGTGCTTAACGACATCTTCCGGTACATGGCCGAA GAGCCAGAAGAAGAACCCGAGCAGCCCACCCCGGCTGCGCCTACTGCTGAAGCTCCTGAGGCTGTTGCCGAGGTT CCCGCTGAGGAGCACCAGGTGATTGATGAAGTAACTCTCTCAGACGTCGATGAGAAGCTTGAGGAGGTCGAGGCC AACGAGCAGGTTGAGGAGCCCAAGGAGGCCGCTCCTCAGACTAACGGTGTCCCCGCTGAGGAGGCGGCTCCAGCT GCGGTTCTTGCCGTCGAGGCTGAAAACCTGAACGACGAGGAGCCCGCCACCCCTGAGCCCTCTCCTATTGCCGAG AAGGGGGAGGTTCCTGAGAAGGAGACCTCAACCGCTCCCGCTGCTCCTAAGACCTGGGCTAGCATTGCGACTACC TCTTTCGCAGCTAAGGCCGCTGCTGCCGCCAAGGCTTCGGCTGCCCAGGCTGCTCCTGCTGCTCAGGTTACCCCT GCTGTTCCTACTGCTCCCAAGTCTGCTGCTCCCGCTGCTCCCGCTGCCCCTACCGCTCAGCCCGCTGCTGCCACC CCCGCCCCTGCGGAGGTTGCCCGTTCCCCGGAGGCCCCTTCCACCGAAGCCGGCTGGCAGACGGCCGGCGATGGC CACAAGAAGTCGCAGCCCCGTGTTGAGGAGACCGTCCTCGCCTATATCAAGAACGTCAACGACAAGGTTGATGCC AGCCTGCTTAAGCAGACCCTGGCCCGTTTCGGCAAGCTGAAGTACTTCGATGTCAGCCGCCCCAAGAACTGTGCC TTTGTTGAATTCAACGAGCCTGCCGGTTATACCGCTGCCGTTGCTGCCAACCCCCACCAGATTGGCAGCGAGCAG ATCCTCGTCGAGGAGCGCCGCCCACGTGGTAACGCTTACGGTAGCAACGCTTTCCCTGCCGGCCGTGGTGGTGGT GCGGGTCGTGGTCGCGGTGACCGCGCCGGCAGCCAGGGCCGTGGTGGCTTCCAGCGTGAAGGCCGCGGCGGTTTC ACTCCTCGTGGCCGTGGTGGCAACGTTGCCGCCAAAGGTCGCCCTAGCCAGCCCCAAGCTGCTTAA |