© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7449.t1 |
| Gene name | |
| Location | scaffold_23:205346..206787 |
| Strand | + |
| Gene length (bp) | 1441 |
| Transcript length (bp) | 1131 |
| Coding sequence length (bp) | 1131 |
| Protein length (aa) | 377 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05462 | Dicty_CAR | Slime mold cyclic AMP receptor | 9.6E-09 | 18 | 181 |
| PF11710 | Git3 | G protein-coupled glucose receptor regulating Gpa2 | 1.0E-06 | 5 | 187 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 21 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 39 | 19 |
| 2 | 46 | 68 | 22 |
| 3 | 83 | 105 | 22 |
| 4 | 118 | 140 | 22 |
| 5 | 164 | 186 | 22 |
| 6 | 314 | 336 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 32.83 | 17.46 | 48.19 |
| 5d_25C | Five days - 25 degrees Celsius | 26.26 | 13.13 | 39.39 |
| 7d_25C | Seven days - 25 degrees Celsius | 22.76 | 10.57 | 34.95 |
| 10d_25C | Ten days - 25 degrees Celsius | 10.48 | 3.99 | 16.97 |
| 7d_15C | Seven days - 15 degrees Celsius | 25.10 | 12.22 | 37.98 |
| 7d_30C | Seven days - 30 degrees Celsius | 27.08 | 13.42 | 40.73 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.477968 | no |
| 3d_25C | 7d_25C | 0.215512 | no |
| 3d_25C | 7d_15C | 0.390166 | no |
| 3d_25C | 7d_30C | 0.571577 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.696185 | no |
| 5d_25C | 7d_15C | 0.916043 | no |
| 5d_25C | 7d_30C | 0.945661 | no |
| 5d_25C | 10d_25C | 0.002761 | yes |
| 7d_25C | 7d_15C | 0.815526 | no |
| 7d_25C | 7d_30C | 0.640977 | no |
| 7d_25C | 10d_25C | 0.013810 | yes |
| 7d_15C | 7d_30C | 0.857858 | no |
| 7d_15C | 10d_25C | 0.004450 | yes |
| 7d_30C | 10d_25C | 0.002297 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7449.t1 MTLSEQQILAISATERVCSTVSLVGTFVIVATFIWSPTFRKPINRLVFYASWGNMMANIATIISADGIHSGVDSS LCQFQGFLIQWFMPADALWTFAMACNVYLTFFHKYDSEQLRRLEWKYVLCCYGVPFVPAFAYFFIQTQARGRIYG SALLWCWISVQWSFLRIAIFYGPVWLIISLTFAIYLRAGTVIYQKRRQLRNLGGIDSDLVPESPFAMLTGIQVTR EIACFTPERRSLSEGDASGLPSNAFRAYSVTIEGGSTANTLQKSSSKTDSSPLQQENFGKTGRPDGADSQRRSTS TEASSATWAYTKYAMLFFIALLVTWVPSTINRVYSLARPNNFNFNAYARGAYPVRRRIYNLSIYGKTLKARVLLF W* |
| Coding | >Pro_DTO377G3_2|g7449.t1 ATGACGCTGTCAGAACAACAAATATTAGCCATCTCGGCTACAGAGCGTGTTTGCTCGACTGTCTCCCTTGTTGGC ACTTTCGTTATAGTCGCTACTTTTATTTGGTCCCCCACATTCCGTAAACCCATCAACCGCTTGGTGTTCTATGCA TCATGGGGTAACATGATGGCTAATATAGCCACCATCATATCGGCAGACGGGATTCATTCTGGGGTTGATAGTTCC CTGTGCCAGTTTCAAGGGTTTTTGATTCAATGGTTCATGCCCGCCGATGCACTATGGACTTTTGCAATGGCATGC AATGTTTACCTAACATTCTTCCACAAATACGACTCGGAGCAACTACGTCGGCTCGAATGGAAATATGTGCTCTGC TGTTACGGTGTTCCATTCGTCCCAGCTTTCGCATACTTCTTCATCCAGACCCAAGCTCGGGGCCGAATATATGGC TCCGCCCTCCTCTGGTGCTGGATCTCTGTACAGTGGTCCTTCCTCCGCATCGCTATCTTCTACGGACCAGTCTGG CTCATTATCTCATTGACCTTCGCCATCTATTTACGAGCAGGGACGGTGATTTACCAGAAACGGCGCCAGCTTCGG AACCTCGGCGGCATTGACTCAGATCTTGTCCCAGAATCTCCCTTTGCTATGTTGACTGGCATTCAAGTTACCAGG GAGATTGCCTGTTTCACTCCAGAGCGCCGGTCCTTGTCGGAGGGCGACGCGAGCGGGTTGCCGTCTAATGCGTTC AGAGCATACTCGGTCACGATCGAGGGCGGTAGTACAGCCAACACGCTTCAAAAGTCCAGCTCAAAAACCGATTCC AGCCCTCTTCAGCAGGAGAATTTTGGCAAGACTGGGCGGCCGGATGGGGCAGACTCACAGCGGAGGTCGACGTCC ACAGAAGCTAGTTCAGCAACGTGGGCATATACAAAATACGCTATGCTGTTCTTCATTGCATTGCTTGTTACATGG GTCCCCTCAACGATAAACAGAGTCTATTCCCTGGCTCGTCCTAACAACTTTAATTTTAACGCGTATGCTCGTGGC GCATATCCCGTTCGGCGACGAATATACAATCTTTCAATCTACGGAAAGACTCTCAAAGCCCGAGTCCTGCTCTTT TGGTGA |
| Transcript | >Pro_DTO377G3_2|g7449.t1 ATGACGCTGTCAGAACAACAAATATTAGCCATCTCGGCTACAGAGCGTGTTTGCTCGACTGTCTCCCTTGTTGGC ACTTTCGTTATAGTCGCTACTTTTATTTGGTCCCCCACATTCCGTAAACCCATCAACCGCTTGGTGTTCTATGCA TCATGGGGTAACATGATGGCTAATATAGCCACCATCATATCGGCAGACGGGATTCATTCTGGGGTTGATAGTTCC CTGTGCCAGTTTCAAGGGTTTTTGATTCAATGGTTCATGCCCGCCGATGCACTATGGACTTTTGCAATGGCATGC AATGTTTACCTAACATTCTTCCACAAATACGACTCGGAGCAACTACGTCGGCTCGAATGGAAATATGTGCTCTGC TGTTACGGTGTTCCATTCGTCCCAGCTTTCGCATACTTCTTCATCCAGACCCAAGCTCGGGGCCGAATATATGGC TCCGCCCTCCTCTGGTGCTGGATCTCTGTACAGTGGTCCTTCCTCCGCATCGCTATCTTCTACGGACCAGTCTGG CTCATTATCTCATTGACCTTCGCCATCTATTTACGAGCAGGGACGGTGATTTACCAGAAACGGCGCCAGCTTCGG AACCTCGGCGGCATTGACTCAGATCTTGTCCCAGAATCTCCCTTTGCTATGTTGACTGGCATTCAAGTTACCAGG GAGATTGCCTGTTTCACTCCAGAGCGCCGGTCCTTGTCGGAGGGCGACGCGAGCGGGTTGCCGTCTAATGCGTTC AGAGCATACTCGGTCACGATCGAGGGCGGTAGTACAGCCAACACGCTTCAAAAGTCCAGCTCAAAAACCGATTCC AGCCCTCTTCAGCAGGAGAATTTTGGCAAGACTGGGCGGCCGGATGGGGCAGACTCACAGCGGAGGTCGACGTCC ACAGAAGCTAGTTCAGCAACGTGGGCATATACAAAATACGCTATGCTGTTCTTCATTGCATTGCTTGTTACATGG GTCCCCTCAACGATAAACAGAGTCTATTCCCTGGCTCGTCCTAACAACTTTAATTTTAACGCGTATGCTCGTGGC GCATATCCCGTTCGGCGACGAATATACAATCTTTCAATCTACGGAAAGACTCTCAAAGCCCGAGTCCTGCTCTTT TGGTGA |
| Gene | >Pro_DTO377G3_2|g7449.t1 ATGACGCTGTCAGAACAACAAATATTAGCCATCTCGGCTACAGAGCGTGTTTGCTCGACTGTCTCCCTTGTTGGC ACTTTCGTTATAGTCGCTACTTTTATTTGGTCCCCCACATTCCGTAAACCCATCAACCGCTTGGTGTTCTATGCA TCATGGGGTAACATGATGGCTAATATAGCCACCATCATATCGGCAGACGGGATTCATTCTGGGGTTGATAGTTCC CTGTGCCAGTTTCAAGGGTTTTTGATTCAATGGTTCGTATCAAATCGGAACTAACACCATTAGCAGATGGCCACT AATAAGCAAGGATGCATAGGTTCATGCCCGCCGATGCACTATGGACTTTTGCAATGGCATGCAATGTTTACCTAA CATTCTTCCACAAATACGACTCGGAGCAACTACGTCGGCTCGAATGGAAATATGTGCTCTGCTGTTACGGTGTTC CATTCGTCCCAGCTTTCGCATACTTCTTCATCCAGACCCAAGCTCGGGGCCGAATATATGGCTCCGCCCTCGTGA GCAGAACCCCAAAGTCCTCCCTTCTATCACCCTATGCTAATCCAATCATCCACCGACAGCTCTGGTGCTGGATCT CTGTACAGTGGTCCTTCCTCCGCATCGCTATCTTCTACGGACCAGTCTGGCTCATTATCTCATTGACCTTCGCCA TCTATTTACGAGCAGGGACGGTGATTTACCAGAAACGGCGCCAGCTTCGGAACCTCGGCGGCATTGACTCAGATC TTGTCCCAGAATCTCCCTTTGCTATGTTGACTGGCATTCAAGTTACCAGGGAGATTGCCTGTTTCACTCCAGAGC GCCGGTCCTTGTCGGAGGGCGACGCGAGCGGGTTGCCGTCTAATGCGTTCAGAGCATACTCGGTCACGATCGAGG GCGGTAGTACAGCCAACACGCTTCAAAAGTCCAGCTCAAAAACCGATTCCAGCCCTCTTCAGCAGGAGAATTTTG GCAAGACTGGGCGGCCGGATGGGGCAGACTCACAGCGGAGGTCGACGTCCACAGAAGCTAGTTCAGCAACGTGGG CATATACAAAATACGCTATGCTGTTCTTCATTGCATTGCTTGTTACATGGGTAGGTCTAATTGAAGCCCATTATA ATCTAAAAACTGCTGTCGGTTCTTTGTGTTGATTGTTCGACACTGCAGGTCCCCTCAACGATAAACAGAGTCTAT TCCCTGGCTCGTCCTAACAACTTTAATTTTAGTCTGAACTATGCATCTAGCTTTGTCCTTCCCCTCCAGGGATTT TGGAACAGCCTTATATACGTCTCTATCTCATGGCCCGCATTCAAATTACTTTGGTCTGACCTCTATAGACGCGTA TGCTCGTGGCGCATATCCCGTTCGGCGACGAATATACAATCTTTCAATCTACGGAAAGACTCTCAAAGCCCGAGT CCTGCTCTTTTGGTGA |