Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7442.t1
Gene name
Locationscaffold_23:187072..189035
Strand+
Gene length (bp)1963
Transcript length (bp)1767
Coding sequence length (bp)1767
Protein length (aa) 589

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8.4E-12 389 458
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.0E-07 519 573

GO

GO Term Description Terminal node
GO:0003676 nucleic acid binding Yes
GO:0097159 organic cyclic compound binding No
GO:1901363 heterocyclic compound binding No
GO:0005488 binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 39 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7442.t1
MNGDTYSSRETGRSRDYFRDERRDRDRGDRPERGAERPADRGAERGAERGTERGAERGDRSDRGERRRSRSPHHG
SRREREVNSYSTSRDYRAREREDRYSGRRDDREWDRGDRAERGDRAERGGGDRGGGDRGGGDRGGGDRGGGRRRD
FDERPRRDLFDDRRGGRGGGDRGDRGDRERRDRKRSATPPRRKEPTPDLTDVPSVLTRKRRLTQWDMKPPGYENV
TAEQAKISGMFPLPGAPRQQPMDPSRMKDFLNPPTGDSDNAALKPSNSRQSKRLFVYNIPSGVSGDAVITFFNLQ
LNGLNVIHNVDPCISAQVSEDKTFALLEFKDPNDATVALAFDGITMAESGDKGLEVRRPKDYIVPDGSASQPVQP
DVVLSEVPDSPNKICISNIPTYINEEAIIMLLKSFGDLKSFVLVKDAATEESRGIAFYEYVDPNNTALAVEGLNG
MELVDHHLKFALASVGTTQASGLDMGVNAMQMFAKTTSQDLETTQVLQLLNMVTLDELLNDEDYEEIMEDVSEEC
AKFGKILGMKIPRRGHGAGKIFIKYDTAESATTALKALAGRKFSDRTVVASYFGVENFDTEAW*
Coding >Pro_DTO377G3_2|g7442.t1
ATGAACGGTGACACCTACTCATCCAGAGAGACTGGACGTTCCCGCGACTACTTCCGCGACGAGCGGCGTGATCGA
GACCGGGGTGACAGACCCGAACGCGGAGCTGAGCGACCTGCCGACCGAGGTGCTGAGCGTGGTGCCGAACGAGGA
ACCGAGCGTGGAGCTGAACGGGGCGATAGGAGTGATCGCGGTGAACGACGCCGTTCGCGTTCGCCTCATCATGGA
TCTCGTCGGGAGCGCGAAGTGAACTCGTACTCAACCAGCCGTGACTACCGTGCCCGTGAGCGCGAAGACCGCTAC
TCTGGCCGCCGTGATGATCGAGAGTGGGACCGTGGCGACCGTGCCGAGCGAGGTGACCGCGCTGAGCGTGGGGGT
GGTGACCGTGGTGGTGGTGATCGTGGGGGTGGTGACCGTGGTGGTGGAGATCGCGGTGGTGGTCGTCGACGTGAC
TTTGACGAAAGACCCCGTCGCGACTTGTTTGACGACCGACGCGGTGGACGTGGTGGCGGTGACCGTGGTGACCGT
GGAGACCGTGAGAGAAGAGACCGCAAGCGAAGCGCCACGCCCCCGCGGCGCAAGGAGCCTACCCCCGATTTGACA
GATGTGCCCTCGGTGTTGACCCGTAAACGTCGTTTGACTCAATGGGACATGAAGCCTCCTGGTTATGAGAATGTT
ACGGCTGAACAGGCAAAGATCTCAGGGATGTTCCCTCTTCCCGGAGCTCCTCGTCAGCAGCCGATGGACCCCAGC
CGCATGAAGGACTTCCTGAACCCTCCCACTGGCGATAGCGACAATGCTGCCCTCAAGCCTTCTAACTCTCGTCAA
TCAAAGCGTCTTTTCGTTTACAACATCCCGTCCGGTGTCTCGGGCGATGCCGTTATTACCTTCTTCAATCTTCAA
TTGAATGGACTCAATGTTATTCACAATGTCGATCCCTGCATCTCTGCCCAAGTTTCTGAAGATAAAACATTCGCG
CTCCTGGAGTTCAAGGATCCAAATGACGCCACAGTCGCATTGGCTTTCGATGGAATTACCATGGCGGAGAGTGGA
GACAAGGGACTTGAAGTGCGACGGCCAAAGGACTACATTGTTCCCGACGGGAGCGCATCGCAGCCAGTACAGCCG
GACGTCGTTCTGAGCGAGGTGCCTGACTCACCCAACAAGATCTGCATCTCTAATATTCCAACCTACATCAACGAG
GAAGCTATTATCATGTTGCTCAAGTCATTCGGCGACCTTAAGTCATTTGTCTTGGTCAAGGATGCTGCTACAGAG
GAGTCTCGGGGAATTGCCTTTTATGAATACGTCGACCCGAACAACACTGCGCTTGCCGTTGAAGGTTTGAACGGC
ATGGAACTAGTCGATCACCACCTTAAGTTTGCTCTCGCCAGCGTTGGAACCACACAAGCCTCTGGCCTCGACATG
GGCGTGAATGCCATGCAGATGTTCGCCAAGACGACCTCCCAGGATCTAGAGACCACCCAGGTCCTGCAGCTTCTC
AACATGGTCACGCTTGACGAGCTCCTCAATGACGAAGATTACGAAGAAATCATGGAGGATGTGAGCGAGGAATGC
GCCAAGTTCGGAAAGATTCTCGGGATGAAGATCCCCCGCCGTGGACACGGCGCTGGTAAAATCTTCATTAAGTAC
GATACCGCTGAATCCGCCACCACCGCTCTCAAAGCGCTGGCGGGTCGCAAGTTCTCTGACCGTACAGTTGTTGCC
TCATACTTCGGCGTTGAGAACTTCGACACCGAGGCCTGGTAA
Transcript >Pro_DTO377G3_2|g7442.t1
ATGAACGGTGACACCTACTCATCCAGAGAGACTGGACGTTCCCGCGACTACTTCCGCGACGAGCGGCGTGATCGA
GACCGGGGTGACAGACCCGAACGCGGAGCTGAGCGACCTGCCGACCGAGGTGCTGAGCGTGGTGCCGAACGAGGA
ACCGAGCGTGGAGCTGAACGGGGCGATAGGAGTGATCGCGGTGAACGACGCCGTTCGCGTTCGCCTCATCATGGA
TCTCGTCGGGAGCGCGAAGTGAACTCGTACTCAACCAGCCGTGACTACCGTGCCCGTGAGCGCGAAGACCGCTAC
TCTGGCCGCCGTGATGATCGAGAGTGGGACCGTGGCGACCGTGCCGAGCGAGGTGACCGCGCTGAGCGTGGGGGT
GGTGACCGTGGTGGTGGTGATCGTGGGGGTGGTGACCGTGGTGGTGGAGATCGCGGTGGTGGTCGTCGACGTGAC
TTTGACGAAAGACCCCGTCGCGACTTGTTTGACGACCGACGCGGTGGACGTGGTGGCGGTGACCGTGGTGACCGT
GGAGACCGTGAGAGAAGAGACCGCAAGCGAAGCGCCACGCCCCCGCGGCGCAAGGAGCCTACCCCCGATTTGACA
GATGTGCCCTCGGTGTTGACCCGTAAACGTCGTTTGACTCAATGGGACATGAAGCCTCCTGGTTATGAGAATGTT
ACGGCTGAACAGGCAAAGATCTCAGGGATGTTCCCTCTTCCCGGAGCTCCTCGTCAGCAGCCGATGGACCCCAGC
CGCATGAAGGACTTCCTGAACCCTCCCACTGGCGATAGCGACAATGCTGCCCTCAAGCCTTCTAACTCTCGTCAA
TCAAAGCGTCTTTTCGTTTACAACATCCCGTCCGGTGTCTCGGGCGATGCCGTTATTACCTTCTTCAATCTTCAA
TTGAATGGACTCAATGTTATTCACAATGTCGATCCCTGCATCTCTGCCCAAGTTTCTGAAGATAAAACATTCGCG
CTCCTGGAGTTCAAGGATCCAAATGACGCCACAGTCGCATTGGCTTTCGATGGAATTACCATGGCGGAGAGTGGA
GACAAGGGACTTGAAGTGCGACGGCCAAAGGACTACATTGTTCCCGACGGGAGCGCATCGCAGCCAGTACAGCCG
GACGTCGTTCTGAGCGAGGTGCCTGACTCACCCAACAAGATCTGCATCTCTAATATTCCAACCTACATCAACGAG
GAAGCTATTATCATGTTGCTCAAGTCATTCGGCGACCTTAAGTCATTTGTCTTGGTCAAGGATGCTGCTACAGAG
GAGTCTCGGGGAATTGCCTTTTATGAATACGTCGACCCGAACAACACTGCGCTTGCCGTTGAAGGTTTGAACGGC
ATGGAACTAGTCGATCACCACCTTAAGTTTGCTCTCGCCAGCGTTGGAACCACACAAGCCTCTGGCCTCGACATG
GGCGTGAATGCCATGCAGATGTTCGCCAAGACGACCTCCCAGGATCTAGAGACCACCCAGGTCCTGCAGCTTCTC
AACATGGTCACGCTTGACGAGCTCCTCAATGACGAAGATTACGAAGAAATCATGGAGGATGTGAGCGAGGAATGC
GCCAAGTTCGGAAAGATTCTCGGGATGAAGATCCCCCGCCGTGGACACGGCGCTGGTAAAATCTTCATTAAGTAC
GATACCGCTGAATCCGCCACCACCGCTCTCAAAGCGCTGGCGGGTCGCAAGTTCTCTGACCGTACAGTTGTTGCC
TCATACTTCGGCGTTGAGAACTTCGACACCGAGGCCTGGTAA
Gene >Pro_DTO377G3_2|g7442.t1
ATGAACGGTGACACCTACTCATCCAGAGGTAAGTATCCTTACATTAACTTCTGGTATAACTGCTAATATCCCCAA
GAGACTGGACGTTCCCGCGACTACTTCGTAAGTATCAGCCAATCTTTGGTCGCAACCGCGGCGATTAACCCCAAT
TCTAGCGCGACGAGCGGCGTGATCGAGACCGGGGTGACAGACCCGAACGCGGAGCTGAGCGACCTGCCGACCGAG
GTGCTGAGCGTGGTGCCGAACGAGGAACCGAGCGTGGAGCTGAACGGGGCGATAGGAGTGATCGCGGTGAACGAC
GCCGTTCGCGTTCGCCTCATCATGGATCTCGTCGGGAGCGCGAAGTGAACTCGTACTCAACCAGCCGTGACTACC
GTGCCCGTGAGCGCGAAGACCGCTACTCTGGCCGCCGTGATGATCGAGAGTGGGACCGTGGCGACCGTGCCGAGC
GAGGTGACCGCGCTGAGCGTGGGGGTGGTGACCGTGGTGGTGGTGATCGTGGGGGTGGTGACCGTGGTGGTGGAG
ATCGCGGTGGTGGTCGTCGACGTGACTTTGACGAAAGACCCCGTCGCGACTTGTTTGACGACCGACGCGGTGGAC
GTGGTGGCGGTGACCGTGGTGACCGTGGAGACCGTGAGAGAAGAGACCGCAAGCGAAGCGCCACGCCCCCGCGGC
GCAAGGAGCCTACCCCCGATTTGACAGATGTGCCCTCGGTGTTGACCCGTAAACGTCGTTTGACTCAATGGGACA
TGAAGCCTCCTGGTTATGAGAATGTTACGGCTGAACAGGCAAAGATCTCAGGTATGTGTTTAAAGCTTATGAGCT
AGTGGAACCGTCTAACATCAACAGGGATGTTCCCTCTTCCCGGAGCTCCTCGTCAGCAGCCGATGGACCCCAGCC
GCATGAAGGACTTCCTGAACCCTCCCACTGGCGATAGCGACAATGCTGCCCTCAAGCCTTCTAACTCTCGTCAAT
CAAAGCGTCTTTTCGTTTACAACATCCCGTCCGGTGTCTCGGGCGATGCCGTTATTACCTTCTTCAATCTTCAAT
TGAATGGACTCAATGTTATTCACAATGTCGATCCCTGCATCTCTGCCCAAGTTTCTGAAGATAAAACATTCGCGC
TCCTGGAGTTCAAGGATCCAAATGACGCCACAGTCGCATTGGCTTTCGATGGAATTACCATGGCGGAGAGTGGAG
ACAAGGGACTTGAAGTGCGACGGCCAAAGGACTACATTGTTCCCGACGGGAGCGCATCGCAGCCAGTACAGCCGG
ACGTCGTTCTGAGCGAGGTGCCTGACTCACCCAACAAGATCTGCATCTCTAATATTCCAACCTACATCAACGAGG
AAGCTATTATCATGTTGCTCAAGTCATTCGGCGACCTTAAGTCATTTGTCTTGGTCAAGGATGCTGCTACAGAGG
AGTCTCGGGTAAGTTGAGTATTTCCCTACCGTCAAATTCTTTCTAACTTTTCCAGGGAATTGCCTTTTATGAATA
CGTCGACCCGAACAACACTGCGCTTGCCGTTGAAGGTTTGAACGGCATGGAACTAGTCGATCACCACCTTAAGTT
TGCTCTCGCCAGCGTTGGAACCACACAAGCCTCTGGCCTCGACATGGGCGTGAATGCCATGCAGATGTTCGCCAA
GACGACCTCCCAGGATCTAGAGACCACCCAGGTCCTGCAGCTTCTCAACATGGTCACGCTTGACGAGCTCCTCAA
TGACGAAGATTACGAAGAAATCATGGAGGATGTGAGCGAGGAATGCGCCAAGTTCGGAAAGATTCTCGGGATGAA
GATCCCCCGCCGTGGACACGGCGCTGGTAAAATCTTCATTAAGTACGATACCGCTGAATCCGCCACCACCGCTCT
CAAAGCGCTGGCGGGTCGCAAGTTCTCTGACCGTACAGTTGTTGCCTCATACTTCGGCGTTGAGAACTTCGACAC
CGAGGCCTGGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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