© 2023 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g743.t1 |
| Gene name | |
| Location | scaffold_01:1904495..1906302 |
| Strand | - |
| Gene length (bp) | 1807 |
| Transcript length (bp) | 1743 |
| Coding sequence length (bp) | 1743 |
| Protein length (aa) | 581 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03851 | UvdE | UV-endonuclease UvdE | 4.3E-112 | 71 | 377 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004519 | endonuclease activity | Yes |
| GO:0006289 | nucleotide-excision repair | Yes |
| GO:0009411 | response to UV | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0046483 | heterocycle metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0044260 | cellular macromolecule metabolic process | No |
| GO:0004518 | nuclease activity | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:1901360 | organic cyclic compound metabolic process | No |
| GO:0006725 | cellular aromatic compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0006281 | DNA repair | No |
| GO:0006259 | DNA metabolic process | No |
| GO:0033554 | cellular response to stress | No |
| GO:0006139 | nucleobase-containing compound metabolic process | No |
| GO:0003824 | catalytic activity | No |
| GO:0009628 | response to abiotic stimulus | No |
| GO:0044238 | primary metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0009416 | response to light stimulus | No |
| GO:0006950 | response to stress | No |
| GO:0006974 | cellular response to DNA damage stimulus | No |
| GO:0016787 | hydrolase activity | No |
| GO:0050896 | response to stimulus | No |
| GO:0090304 | nucleic acid metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0051716 | cellular response to stimulus | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0009314 | response to radiation | No |
| GO:0009987 | cellular process | No |
| Gene cluster ID | Type of secondary metabolism gene |
|---|---|
| Cluster 2 | (None) |
| Orthofinder run ID | 2 |
| Orthogroup | 1068 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g743.t1 MVGATETPGPEMKPADILNGDIPLPAGQVEASLDPESDEDVPVDAEELKEALGRPPPVNSSYLPLPWKGRLGYAC LNTYLRYSTPSVFCSRTCRIASIIENRHPLQDPDQPTHPTKNRPDRDQPADVARGQAFVEGLGLANARDLVKIIR WNDKYGIKFMRLSSEMFPFASHKEYGYKLAPFASEVLAEVGRVVGELGHRVSVHPGQFTQFGSPRKEVIENSVRD LEYHSEMLRLLKLPPQQDRDAVMILHMGGVFGDKAATLDRFRENYAMLSQDIKNRLVLENDDVSWSVHDLLPICE ELNIPLVLDYHHHNIIFDANELREGTEDIIPLYERISATWSRKNITQKMHYSEQTTPAITRRQRRKHSARVTTLP PCAPTMDLMIEAKDKEQAVFELMRNFKLPGYDLVNEIIPFIRLDENQPFKPPKNSKKNGAFVDLQGSIPPPRAIP DEEVGMGGPDGRVYWPEGMEEWLRPAKKIVKPKAAPSPKKSAAKKGKNESVTDDAPLDIPVKIETPVKKPVRETK RTPRPSRSRKRRASLTESTPESEETGEVSVELDSARSIPSRSSRAKKVNYAEDSA* |
| Coding | >Pro_DTO377G3_2|g743.t1 ATGGTCGGGGCAACTGAGACGCCTGGGCCGGAGATGAAGCCTGCGGATATCCTCAATGGAGATATACCATTACCT GCTGGTCAGGTAGAGGCTTCATTGGACCCAGAATCAGACGAAGATGTCCCCGTTGATGCGGAAGAGCTAAAAGAG GCACTCGGCCGACCACCTCCGGTGAACAGCAGCTACCTTCCCCTGCCATGGAAAGGTCGATTAGGATATGCTTGT CTAAATACGTACCTTCGCTATTCAACACCGTCCGTATTCTGTTCTCGAACATGTCGAATCGCCTCTATAATCGAA AATCGACACCCGCTCCAAGATCCCGACCAGCCCACACACCCGACCAAAAATCGCCCAGATCGCGATCAGCCAGCC GATGTTGCACGCGGACAAGCTTTCGTTGAGGGGCTAGGCCTGGCGAATGCACGCGATTTGGTCAAAATCATCCGT TGGAACGACAAGTATGGCATTAAGTTCATGCGACTCAGCAGTGAGATGTTCCCATTTGCCAGTCATAAGGAATAT GGTTATAAGCTGGCGCCATTCGCCTCGGAGGTGCTGGCAGAAGTAGGACGTGTGGTTGGAGAACTTGGACACCGG GTTTCGGTTCACCCTGGCCAATTTACTCAATTTGGATCACCGAGAAAAGAAGTCATCGAGAATTCCGTTCGCGAT CTCGAGTATCACTCGGAAATGCTCCGGCTACTCAAACTTCCTCCACAGCAGGACCGCGATGCAGTCATGATCCTT CATATGGGTGGAGTGTTTGGTGATAAGGCTGCTACACTGGATCGGTTCCGAGAGAACTACGCTATGTTGTCGCAA GACATCAAGAATCGATTAGTTCTGGAGAATGACGACGTGAGCTGGTCCGTTCACGATCTACTGCCTATTTGCGAG GAGCTCAATATCCCTCTTGTCCTCGACTACCACCACCATAATATCATTTTTGACGCCAATGAGCTCCGAGAGGGA ACCGAGGATATCATACCCCTCTATGAGCGTATATCAGCAACATGGTCTCGGAAGAATATCACTCAAAAGATGCAC TATTCCGAACAAACTACACCCGCCATCACTCGGCGCCAACGACGCAAACACAGTGCCCGCGTTACTACTTTACCT CCTTGTGCGCCTACCATGGACCTGATGATTGAGGCCAAGGACAAAGAACAAGCCGTATTTGAGTTGATGAGAAAC TTCAAACTCCCCGGCTACGATCTTGTGAACGAAATAATACCCTTCATACGCCTTGACGAAAACCAACCATTCAAA CCACCCAAAAATTCCAAGAAGAACGGGGCATTCGTGGACCTACAAGGCTCAATACCACCGCCTCGCGCCATCCCA GACGAAGAAGTCGGGATGGGTGGGCCGGATGGCAGGGTCTATTGGCCTGAGGGCATGGAAGAATGGCTCCGACCG GCGAAGAAAATCGTGAAGCCTAAGGCTGCACCAAGTCCTAAAAAAAGCGCCGCCAAAAAGGGTAAGAATGAGTCT GTCACAGACGATGCTCCCCTAGATATACCCGTCAAGATAGAAACGCCAGTCAAAAAACCGGTCAGGGAGACGAAA CGCACACCTCGGCCGAGCAGGTCTCGCAAACGCAGAGCTTCGTTGACTGAGTCTACCCCAGAGTCCGAAGAAACT GGGGAGGTTTCGGTGGAACTGGACAGTGCTCGTTCGATACCTTCTCGAAGTTCACGTGCAAAGAAGGTGAACTAC GCCGAGGACAGTGCATAA |
| Transcript | >Pro_DTO377G3_2|g743.t1 ATGGTCGGGGCAACTGAGACGCCTGGGCCGGAGATGAAGCCTGCGGATATCCTCAATGGAGATATACCATTACCT GCTGGTCAGGTAGAGGCTTCATTGGACCCAGAATCAGACGAAGATGTCCCCGTTGATGCGGAAGAGCTAAAAGAG GCACTCGGCCGACCACCTCCGGTGAACAGCAGCTACCTTCCCCTGCCATGGAAAGGTCGATTAGGATATGCTTGT CTAAATACGTACCTTCGCTATTCAACACCGTCCGTATTCTGTTCTCGAACATGTCGAATCGCCTCTATAATCGAA AATCGACACCCGCTCCAAGATCCCGACCAGCCCACACACCCGACCAAAAATCGCCCAGATCGCGATCAGCCAGCC GATGTTGCACGCGGACAAGCTTTCGTTGAGGGGCTAGGCCTGGCGAATGCACGCGATTTGGTCAAAATCATCCGT TGGAACGACAAGTATGGCATTAAGTTCATGCGACTCAGCAGTGAGATGTTCCCATTTGCCAGTCATAAGGAATAT GGTTATAAGCTGGCGCCATTCGCCTCGGAGGTGCTGGCAGAAGTAGGACGTGTGGTTGGAGAACTTGGACACCGG GTTTCGGTTCACCCTGGCCAATTTACTCAATTTGGATCACCGAGAAAAGAAGTCATCGAGAATTCCGTTCGCGAT CTCGAGTATCACTCGGAAATGCTCCGGCTACTCAAACTTCCTCCACAGCAGGACCGCGATGCAGTCATGATCCTT CATATGGGTGGAGTGTTTGGTGATAAGGCTGCTACACTGGATCGGTTCCGAGAGAACTACGCTATGTTGTCGCAA GACATCAAGAATCGATTAGTTCTGGAGAATGACGACGTGAGCTGGTCCGTTCACGATCTACTGCCTATTTGCGAG GAGCTCAATATCCCTCTTGTCCTCGACTACCACCACCATAATATCATTTTTGACGCCAATGAGCTCCGAGAGGGA ACCGAGGATATCATACCCCTCTATGAGCGTATATCAGCAACATGGTCTCGGAAGAATATCACTCAAAAGATGCAC TATTCCGAACAAACTACACCCGCCATCACTCGGCGCCAACGACGCAAACACAGTGCCCGCGTTACTACTTTACCT CCTTGTGCGCCTACCATGGACCTGATGATTGAGGCCAAGGACAAAGAACAAGCCGTATTTGAGTTGATGAGAAAC TTCAAACTCCCCGGCTACGATCTTGTGAACGAAATAATACCCTTCATACGCCTTGACGAAAACCAACCATTCAAA CCACCCAAAAATTCCAAGAAGAACGGGGCATTCGTGGACCTACAAGGCTCAATACCACCGCCTCGCGCCATCCCA GACGAAGAAGTCGGGATGGGTGGGCCGGATGGCAGGGTCTATTGGCCTGAGGGCATGGAAGAATGGCTCCGACCG GCGAAGAAAATCGTGAAGCCTAAGGCTGCACCAAGTCCTAAAAAAAGCGCCGCCAAAAAGGGTAAGAATGAGTCT GTCACAGACGATGCTCCCCTAGATATACCCGTCAAGATAGAAACGCCAGTCAAAAAACCGGTCAGGGAGACGAAA CGCACACCTCGGCCGAGCAGGTCTCGCAAACGCAGAGCTTCGTTGACTGAGTCTACCCCAGAGTCCGAAGAAACT GGGGAGGTTTCGGTGGAACTGGACAGTGCTCGTTCGATACCTTCTCGAAGTTCACGTGCAAAGAAGGTGAACTAC GCCGAGGACAGTGCATAA |
| Gene | >Pro_DTO377G3_2|g743.t1 ATGGTCGGGGCAACTGAGACGCCTGGGCCGGAGATGAAGCCTGCGGATATCCTCAATGGAGATATACCATTACCT GCTGGTCAGGTAGAGGCTTCATTGGACCCAGAATCAGACGAAGATGTCCCCGTTGATGCGGAAGAGCTAAAAGAG GCACTCGGCCGACCACCTCCGGTGAACAGCAGCTACCTTCCCCTGCCATGGAAAGGTCGATTAGGATATGTGAGT TTTGCTGTGCTGGGCACGATACACTCGCGCTGACGATTATGGGTTCTGACTTGCACAGGCTTGTCTAAATACGTA CCTTCGCTATTCAACACCGTCCGTATTCTGTTCTCGAACATGTCGAATCGCCTCTATAATCGAAAATCGACACCC GCTCCAAGATCCCGACCAGCCCACACACCCGACCAAAAATCGCCCAGATCGCGATCAGCCAGCCGATGTTGCACG CGGACAAGCTTTCGTTGAGGGGCTAGGCCTGGCGAATGCACGCGATTTGGTCAAAATCATCCGTTGGAACGACAA GTATGGCATTAAGTTCATGCGACTCAGCAGTGAGATGTTCCCATTTGCCAGTCATAAGGAATATGGTTATAAGCT GGCGCCATTCGCCTCGGAGGTGCTGGCAGAAGTAGGACGTGTGGTTGGAGAACTTGGACACCGGGTTTCGGTTCA CCCTGGCCAATTTACTCAATTTGGATCACCGAGAAAAGAAGTCATCGAGAATTCCGTTCGCGATCTCGAGTATCA CTCGGAAATGCTCCGGCTACTCAAACTTCCTCCACAGCAGGACCGCGATGCAGTCATGATCCTTCATATGGGTGG AGTGTTTGGTGATAAGGCTGCTACACTGGATCGGTTCCGAGAGAACTACGCTATGTTGTCGCAAGACATCAAGAA TCGATTAGTTCTGGAGAATGACGACGTGAGCTGGTCCGTTCACGATCTACTGCCTATTTGCGAGGAGCTCAATAT CCCTCTTGTCCTCGACTACCACCACCATAATATCATTTTTGACGCCAATGAGCTCCGAGAGGGAACCGAGGATAT CATACCCCTCTATGAGCGTATATCAGCAACATGGTCTCGGAAGAATATCACTCAAAAGATGCACTATTCCGAACA AACTACACCCGCCATCACTCGGCGCCAACGACGCAAACACAGTGCCCGCGTTACTACTTTACCTCCTTGTGCGCC TACCATGGACCTGATGATTGAGGCCAAGGACAAAGAACAAGCCGTATTTGAGTTGATGAGAAACTTCAAACTCCC CGGCTACGATCTTGTGAACGAAATAATACCCTTCATACGCCTTGACGAAAACCAACCATTCAAACCACCCAAAAA TTCCAAGAAGAACGGGGCATTCGTGGACCTACAAGGCTCAATACCACCGCCTCGCGCCATCCCAGACGAAGAAGT CGGGATGGGTGGGCCGGATGGCAGGGTCTATTGGCCTGAGGGCATGGAAGAATGGCTCCGACCGGCGAAGAAAAT CGTGAAGCCTAAGGCTGCACCAAGTCCTAAAAAAAGCGCCGCCAAAAAGGGTAAGAATGAGTCTGTCACAGACGA TGCTCCCCTAGATATACCCGTCAAGATAGAAACGCCAGTCAAAAAACCGGTCAGGGAGACGAAACGCACACCTCG GCCGAGCAGGTCTCGCAAACGCAGAGCTTCGTTGACTGAGTCTACCCCAGAGTCCGAAGAAACTGGGGAGGTTTC GGTGGAACTGGACAGTGCTCGTTCGATACCTTCTCGAAGTTCACGTGCAAAGAAGGTGAACTACGCCGAGGACAG TGCATAA |