© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7426.t1 |
| Gene name | |
| Location | scaffold_23:148672..150252 |
| Strand | - |
| Gene length (bp) | 1580 |
| Transcript length (bp) | 1398 |
| Coding sequence length (bp) | 1398 |
| Protein length (aa) | 466 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00735 | Septin | Septin | 1.5E-120 | 89 | 366 |
| PF01926 | MMR_HSR1 | 50S ribosome-binding GTPase | 3.1E-07 | 94 | 227 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005525 | GTP binding | Yes |
| GO:0019001 | guanyl nucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0003674 | molecular_function | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0043168 | anion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0032561 | guanyl ribonucleotide binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0043167 | ion binding | No |
| GO:0005488 | binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 55.41 | 32.77 | 78.06 |
| 5d_25C | Five days - 25 degrees Celsius | 29.81 | 15.69 | 43.92 |
| 7d_25C | Seven days - 25 degrees Celsius | 28.53 | 14.25 | 42.80 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.32 | 10.84 | 33.81 |
| 7d_15C | Seven days - 15 degrees Celsius | 31.23 | 13.47 | 48.99 |
| 7d_30C | Seven days - 30 degrees Celsius | 44.07 | 23.92 | 64.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.004840 | yes |
| 3d_25C | 7d_25C | 0.005235 | yes |
| 3d_25C | 7d_15C | 0.040199 | yes |
| 3d_25C | 7d_30C | 0.394081 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.915219 | no |
| 5d_25C | 7d_15C | 0.915533 | no |
| 5d_25C | 7d_30C | 0.130358 | no |
| 5d_25C | 10d_25C | 0.330010 | no |
| 7d_25C | 7d_15C | 0.830579 | no |
| 7d_25C | 7d_30C | 0.102560 | no |
| 7d_25C | 10d_25C | 0.448299 | no |
| 7d_15C | 7d_30C | 0.258414 | no |
| 7d_15C | 10d_25C | 0.302771 | no |
| 7d_30C | 10d_25C | 0.006000 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7426.t1 MSSPPASSSPVASPVASRDSPTPNNGTESPFVERSNPMGSGIAQTVSSRDPKAAAQAATDMKNVVRRKLTGYVGF ANLPNQWHRKSVRKGFNFNVMVVGESGLGKSTLVNTLFNTSLYPPKERTGPNADIIPKTVSIQSTSADIEENGVR LRLSVIDTPGFGDFVNNDDSWRPIVENIEQRYDTYLEAENKVNRSNIVDNRIHACVYFIQPTGHSLKPLDIEVMR RLHTKVNLIPVIAKADTLTDDEVALFKQRILADIEQHSLQIFEGPRYELDDEETIAENQEIMSKVPFAVVGANSE VTTADGRRVRGRSYPWGIIEVDNEEHCDFVKLRQMLIRTHMEELKEHTNNFLYENYRSEKLTLMGVAQDPSVFKE VNPAVKQEEERALHEQKLAKMEAEMKMVFQQKVAEKESKLKQSEDELYARHREMKDQLDRQRGELEEKKGRLETG RPVEEKGKRKGFSLR* |
| Coding | >Pro_DTO377G3_2|g7426.t1 ATGTCTTCGCCACCTGCGAGCAGCTCCCCCGTCGCGTCTCCCGTCGCATCGAGGGACTCTCCTACTCCCAACAAC GGCACGGAGTCGCCTTTCGTCGAGCGCAGCAACCCTATGGGCTCTGGTATCGCCCAGACCGTCAGCTCCCGCGAT CCCAAGGCCGCAGCTCAGGCCGCCACCGACATGAAGAACGTGGTCCGCCGCAAGCTGACTGGCTACGTCGGTTTC GCCAACCTGCCCAACCAGTGGCATCGCAAGAGTGTCCGTAAAGGCTTCAACTTCAATGTCATGGTTGTCGGTGAA TCTGGTCTCGGAAAGTCCACCCTCGTGAACACCCTGTTCAACACCTCGCTCTACCCCCCGAAGGAGCGGACCGGT CCTAATGCCGATATCATCCCCAAGACCGTGTCTATCCAATCGACCAGCGCCGACATTGAAGAGAATGGTGTGCGT CTCCGCCTGAGTGTGATTGATACCCCCGGATTCGGTGACTTTGTCAACAACGATGACTCCTGGCGCCCGATTGTC GAGAACATCGAGCAGCGATACGACACCTACCTGGAGGCCGAGAACAAGGTCAACCGCAGTAACATTGTCGACAAC CGCATCCATGCGTGTGTCTACTTCATCCAGCCTACTGGCCACTCCCTGAAGCCTCTGGATATCGAGGTGATGCGC CGCCTGCACACCAAGGTCAACTTAATCCCCGTCATTGCCAAGGCCGATACCTTGACCGACGATGAGGTTGCCCTT TTCAAGCAGCGTATCCTTGCCGATATCGAACAACACTCCCTCCAGATCTTCGAAGGCCCCCGCTACGAGCTTGAC GACGAGGAGACCATTGCTGAGAACCAGGAGATCATGTCCAAGGTTCCCTTTGCTGTTGTTGGTGCCAACTCCGAG GTCACCACTGCTGACGGTCGTCGTGTTCGTGGCCGTAGCTACCCCTGGGGTATCATCGAGGTCGACAACGAGGAG CACTGTGACTTTGTCAAGCTGCGCCAGATGCTGATCCGTACCCACATGGAAGAACTCAAGGAGCACACGAACAAC TTCTTGTACGAGAACTACCGGTCCGAGAAGCTCACCCTTATGGGTGTTGCCCAGGACCCCAGCGTCTTCAAGGAG GTCAACCCTGCCGTCAAGCAGGAGGAGGAGCGTGCCCTGCACGAGCAGAAGCTGGCCAAGATGGAAGCCGAAATG AAGATGGTCTTCCAGCAGAAGGTCGCCGAAAAAGAAAGCAAGCTCAAACAGAGCGAAGACGAACTCTATGCCCGA CATCGCGAGATGAAGGATCAGCTAGATCGCCAGCGTGGAGAACTCGAGGAGAAGAAGGGTCGCCTCGAGACTGGA CGTCCCGTCGAAGAGAAGGGCAAGCGAAAGGGCTTCTCTCTTCGCTAA |
| Transcript | >Pro_DTO377G3_2|g7426.t1 ATGTCTTCGCCACCTGCGAGCAGCTCCCCCGTCGCGTCTCCCGTCGCATCGAGGGACTCTCCTACTCCCAACAAC GGCACGGAGTCGCCTTTCGTCGAGCGCAGCAACCCTATGGGCTCTGGTATCGCCCAGACCGTCAGCTCCCGCGAT CCCAAGGCCGCAGCTCAGGCCGCCACCGACATGAAGAACGTGGTCCGCCGCAAGCTGACTGGCTACGTCGGTTTC GCCAACCTGCCCAACCAGTGGCATCGCAAGAGTGTCCGTAAAGGCTTCAACTTCAATGTCATGGTTGTCGGTGAA TCTGGTCTCGGAAAGTCCACCCTCGTGAACACCCTGTTCAACACCTCGCTCTACCCCCCGAAGGAGCGGACCGGT CCTAATGCCGATATCATCCCCAAGACCGTGTCTATCCAATCGACCAGCGCCGACATTGAAGAGAATGGTGTGCGT CTCCGCCTGAGTGTGATTGATACCCCCGGATTCGGTGACTTTGTCAACAACGATGACTCCTGGCGCCCGATTGTC GAGAACATCGAGCAGCGATACGACACCTACCTGGAGGCCGAGAACAAGGTCAACCGCAGTAACATTGTCGACAAC CGCATCCATGCGTGTGTCTACTTCATCCAGCCTACTGGCCACTCCCTGAAGCCTCTGGATATCGAGGTGATGCGC CGCCTGCACACCAAGGTCAACTTAATCCCCGTCATTGCCAAGGCCGATACCTTGACCGACGATGAGGTTGCCCTT TTCAAGCAGCGTATCCTTGCCGATATCGAACAACACTCCCTCCAGATCTTCGAAGGCCCCCGCTACGAGCTTGAC GACGAGGAGACCATTGCTGAGAACCAGGAGATCATGTCCAAGGTTCCCTTTGCTGTTGTTGGTGCCAACTCCGAG GTCACCACTGCTGACGGTCGTCGTGTTCGTGGCCGTAGCTACCCCTGGGGTATCATCGAGGTCGACAACGAGGAG CACTGTGACTTTGTCAAGCTGCGCCAGATGCTGATCCGTACCCACATGGAAGAACTCAAGGAGCACACGAACAAC TTCTTGTACGAGAACTACCGGTCCGAGAAGCTCACCCTTATGGGTGTTGCCCAGGACCCCAGCGTCTTCAAGGAG GTCAACCCTGCCGTCAAGCAGGAGGAGGAGCGTGCCCTGCACGAGCAGAAGCTGGCCAAGATGGAAGCCGAAATG AAGATGGTCTTCCAGCAGAAGGTCGCCGAAAAAGAAAGCAAGCTCAAACAGAGCGAAGACGAACTCTATGCCCGA CATCGCGAGATGAAGGATCAGCTAGATCGCCAGCGTGGAGAACTCGAGGAGAAGAAGGGTCGCCTCGAGACTGGA CGTCCCGTCGAAGAGAAGGGCAAGCGAAAGGGCTTCTCTCTTCGCTAA |
| Gene | >Pro_DTO377G3_2|g7426.t1 ATGTGTAAGCTATCCCACCCGTGATGAGACAGATAATCTCGAGGCTCTTCCAAGACAAGATACTGATAGGTCTTT GAAGCTTCGCCACCTGCGAGCAGCTCCCCCGTCGCGTCTCCCGTCGCATCGAGGGACTCTCCTACTCCCAACAAC GGCACGGAGTCGCCTTTCGTCGAGCGCAGCAACCCTATGGGCTCTGGTATCGCCCAGACCGTCAGCTCCCGCGAT CCCAAGGCCGCAGCTCAGGCCGCCACCGACATGAAGAACGTGGTCCGCCGCAAGCTGACTGGCTACGTCGGTTTC GCCAACCTGCCCAACCAGTGGCATCGCAAGAGTGTCCGTAAAGGCTTCAACTTCAATGTCATGGTTGTCGGTAAG TTGGACAGATAATATTTCCATGGACCAAGCTCATATCCATCAGGTGAATCTGGTCTCGGAAAGTCCACCCTCGTG AACACCCTGTTCAACACCTCGCTCTACCCCCCGAAGGAGCGGACCGGTCCTAATGCCGATATCATCCCCAAGACC GTGTCTATCCAATCGACCAGCGCCGACATTGAAGAGAATGGTGTGCGTCTCCGCCTGAGTGTGATTGATACCCCC GGATTCGGTGACTTTGTCAACAACGATGACTCCTGGCGCCCGATTGTCGAGAACATCGAGCAGCGATACGACACC TACCTGGAGGCCGAGAACAAGGTCAACCGCAGTAACATTGTCGACAACCGCATCCATGCGTGTGTCTACTTCATC CAGCCTACTGGCCACTCCCTGAAGCCTCTGGATATCGAGGTGATGCGCCGCCTGCACACCAAGGTCAACTTAATC CCCGTCATTGCCAAGGCCGATACCTTGACCGACGATGAGGTTGCCCTTTTCAAGCAGCGTGTAAGTTTTTGGGAT TCCCTTTCTGAATCGATTGAAGCTGTGCATACTGACTCTTCTAGATCCTTGCCGATATCGAACAACACTCCCTCC AGATCTTCGAAGGCCCCCGCTACGAGCTTGACGACGAGGAGACCATTGCTGAGAACCAGGAGATCATGTCCAAGG TTCCCTTTGCTGTTGTTGGTGCCAACTCCGAGGTCACCACTGCTGACGGTCGTCGTGTTCGTGGCCGTAGCTACC CCTGGGGTATCATCGAGGTCGACAACGAGGAGCACTGTGACTTTGTCAAGCTGCGCCAGATGCTGATCCGTACCC ACATGGAAGAACTCAAGGAGCACACGAACAACTTCTTGTACGAGAACTACCGGTCCGAGAAGCTCACCCTTATGG GTGTTGCCCAGGACCCCAGCGTCTTCAAGGAGGTCAACCCTGCCGTCAAGCAGGAGGAGGAGCGTGCCCTGCACG AGCAGAAGCTGGCCAAGATGGAAGCCGAAATGAAGATGGTCTTCCAGCAGAAGGTCGCCGAAAAAGAAAGCAAGC TCAAACAGAGCGAAGACGAACTCTATGCCCGACATCGCGAGATGAAGGATCAGCTAGATCGCCAGCGTGGAGAAC TCGAGGAGAAGAAGGGTCGCCTCGAGACTGGACGTCCCGTCGAAGAGAAGGGCAAGCGAAAGGGCTTCTCTCTTC GCTAA |