Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7417.t1
Gene name
Locationscaffold_23:114099..115151
Strand-
Gene length (bp)1052
Transcript length (bp)861
Coding sequence length (bp)861
Protein length (aa) 287

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF03661 TMEM33_Pom33 Transmembrane protein 33/Nucleoporin POM33 4.6E-32 17 264

GO

GO Term Description Terminal node
GO:0016021 integral component of membrane Yes
GO:0110165 cellular anatomical entity No
GO:0005575 cellular_component No
GO:0031224 intrinsic component of membrane No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 11 0.5

Transmembrane Domains

Domain # Start End Length
1 27 49 22
2 56 78 22
3 105 127 22
4 192 214 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

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Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7417.t1
MAPPPSATLPLVERLKALAQTLQFAWFVGHVTLLLSVFRYSLSCIFFNYYSSAAQIAYRLTFISAAVTYGIVVYK
GHFARGVQGSPLAIVLKLISDENVQYLGMALVWLYSRQLILALLPFSVYSVFHVATYSRMYLIPTLQPAAPAAPA
SPTSPTSKPAVKQSPLAETIGRFIKQYYDASMGVVATLEIALLFRLALSAITFSKGSWVLLVIYLSFFRARYAQS
SFVQQAVRQLTARADATISHQSTPPQVRQGWEAIKGIVRQGYEITDIGRYISGPTAAKKPQ*
Coding >Pro_DTO377G3_2|g7417.t1
ATGGCTCCTCCTCCTTCCGCCACCTTGCCTCTGGTTGAGAGACTCAAGGCCTTGGCGCAGACCCTACAGTTTGCC
TGGTTCGTTGGACATGTGACACTTTTGCTCTCAGTCTTCCGCTACTCCCTGTCTTGCATCTTCTTCAACTACTAC
TCCTCCGCGGCACAGATCGCCTACCGTTTGACCTTCATCTCGGCCGCTGTGACTTATGGAATCGTCGTGTACAAG
GGCCACTTCGCCCGAGGTGTCCAAGGCAGCCCTCTGGCAATTGTGTTGAAGCTCATCTCTGATGAGAATGTGCAA
TACCTTGGGATGGCTCTGGTCTGGCTGTACTCGCGCCAGCTCATCCTGGCTCTTCTGCCTTTCAGCGTCTACTCG
GTCTTCCACGTCGCAACCTACAGCCGCATGTACTTAATCCCTACCCTGCAGCCCGCTGCTCCGGCCGCCCCTGCC
TCTCCCACCTCTCCTACCTCCAAGCCCGCTGTCAAGCAGTCTCCCCTCGCCGAGACCATTGGACGGTTCATCAAG
CAGTACTACGATGCTAGCATGGGTGTTGTCGCAACCCTCGAGATCGCCCTGCTGTTCCGACTTGCTCTGTCCGCT
ATCACTTTCTCCAAGGGTAGCTGGGTCCTCTTGGTAATCTACCTGTCTTTCTTCCGCGCCCGCTATGCGCAGAGC
TCCTTCGTCCAGCAAGCTGTCCGCCAGCTTACTGCCCGTGCCGATGCCACTATCTCCCACCAGAGCACTCCTCCC
CAGGTTCGCCAGGGCTGGGAGGCCATCAAGGGTATTGTGCGTCAGGGTTACGAGATCACCGATATTGGCCGCTAC
ATCTCTGGCCCTACCGCTGCTAAGAAGCCGCAGTAA
Transcript >Pro_DTO377G3_2|g7417.t1
ATGGCTCCTCCTCCTTCCGCCACCTTGCCTCTGGTTGAGAGACTCAAGGCCTTGGCGCAGACCCTACAGTTTGCC
TGGTTCGTTGGACATGTGACACTTTTGCTCTCAGTCTTCCGCTACTCCCTGTCTTGCATCTTCTTCAACTACTAC
TCCTCCGCGGCACAGATCGCCTACCGTTTGACCTTCATCTCGGCCGCTGTGACTTATGGAATCGTCGTGTACAAG
GGCCACTTCGCCCGAGGTGTCCAAGGCAGCCCTCTGGCAATTGTGTTGAAGCTCATCTCTGATGAGAATGTGCAA
TACCTTGGGATGGCTCTGGTCTGGCTGTACTCGCGCCAGCTCATCCTGGCTCTTCTGCCTTTCAGCGTCTACTCG
GTCTTCCACGTCGCAACCTACAGCCGCATGTACTTAATCCCTACCCTGCAGCCCGCTGCTCCGGCCGCCCCTGCC
TCTCCCACCTCTCCTACCTCCAAGCCCGCTGTCAAGCAGTCTCCCCTCGCCGAGACCATTGGACGGTTCATCAAG
CAGTACTACGATGCTAGCATGGGTGTTGTCGCAACCCTCGAGATCGCCCTGCTGTTCCGACTTGCTCTGTCCGCT
ATCACTTTCTCCAAGGGTAGCTGGGTCCTCTTGGTAATCTACCTGTCTTTCTTCCGCGCCCGCTATGCGCAGAGC
TCCTTCGTCCAGCAAGCTGTCCGCCAGCTTACTGCCCGTGCCGATGCCACTATCTCCCACCAGAGCACTCCTCCC
CAGGTTCGCCAGGGCTGGGAGGCCATCAAGGGTATTGTGCGTCAGGGTTACGAGATCACCGATATTGGCCGCTAC
ATCTCTGGCCCTACCGCTGCTAAGAAGCCGCAGTAA
Gene >Pro_DTO377G3_2|g7417.t1
ATGGCTCCTCCTCCTTCCGCCACCTTGCCTCTGGTTGAGAGACTCAAGGCCTTGGCGCAGACCCTACAGTACGTT
TCTCCAGTCCAAGGCTGAAATGAAGCTTCAATGCCTTGTTTATCCATACTAACGAGATGTCACGTTGCAGGTTTG
CCTGGTTCGTTGGGTAGGTCAATCTGAAGCGCACACCGACAAAGATCCAAGTTCAGGCCCACTAACAATTTTTAG
ACATGTGACACTTTTGCTCTCAGTCTTCCGCTACTCCCTGTCTTGCATCTTCTTCAACTACTACTCCTCCGCGGC
ACAGATCGCCTACCGTTTGACCTTCATCTCGGCCGCTGTGACTTATGGAATCGTCGTGTACAAGGGCCACTTCGC
CCGAGGTGTCCAAGGCAGCCCTCTGGCAATTGTGTTGAAGCTCATCTCTGATGAGAATGTGCAATACCTTGGTAA
GTGATCAGCTATGCGACAGCCCAAACCTCAAGCTTACACGTATTCTAGGGATGGCTCTGGTCTGGCTGTACTCGC
GCCAGCTCATCCTGGCTCTTCTGCCTTTCAGCGTCTACTCGGTCTTCCACGTCGCAACCTACAGCCGCATGTACT
TAATCCCTACCCTGCAGCCCGCTGCTCCGGCCGCCCCTGCCTCTCCCACCTCTCCTACCTCCAAGCCCGCTGTCA
AGCAGTCTCCCCTCGCCGAGACCATTGGACGGTTCATCAAGCAGTACTACGATGCTAGCATGGGTGTTGTCGCAA
CCCTCGAGATCGCCCTGCTGTTCCGACTTGCTCTGTCCGCTATCACTTTCTCCAAGGGTAGCTGGGTCCTCTTGG
TAATCTACCTGTCTTTCTTCCGCGCCCGCTATGCGCAGAGCTCCTTCGTCCAGCAAGCTGTCCGCCAGCTTACTG
CCCGTGCCGATGCCACTATCTCCCACCAGAGCACTCCTCCCCAGGTTCGCCAGGGCTGGGAGGCCATCAAGGGTA
TTGTGCGTCAGGGTTACGAGATCACCGATATTGGCCGCTACATCTCTGGCCCTACCGCTGCTAAGAAGCCGCAGT
AA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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