© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g741.t1 |
| Gene name | |
| Location | scaffold_01:1898999..1900643 |
| Strand | - |
| Gene length (bp) | 1644 |
| Transcript length (bp) | 1542 |
| Coding sequence length (bp) | 1542 |
| Protein length (aa) | 514 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00441 | Acyl-CoA_dh_1 | Acyl-CoA dehydrogenase, C-terminal domain | 1.5E-29 | 348 | 503 |
| PF00173 | Cyt-b5 | Cytochrome b5-like Heme/Steroid binding domain | 2.4E-20 | 7 | 78 |
| PF02770 | Acyl-CoA_dh_M | Acyl-CoA dehydrogenase, middle domain | 5.3E-19 | 245 | 334 |
| PF02771 | Acyl-CoA_dh_N | Acyl-CoA dehydrogenase, N-terminal domain | 4.1E-09 | 115 | 206 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors | Yes |
| GO:0050660 | flavin adenine dinucleotide binding | Yes |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:0043167 | ion binding | No |
| GO:0000166 | nucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0036094 | small molecule binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 38 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 59.35 | 36.06 | 82.63 |
| 5d_25C | Five days - 25 degrees Celsius | 56.85 | 34.45 | 79.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 55.63 | 33.68 | 77.59 |
| 10d_25C | Ten days - 25 degrees Celsius | 62.50 | 37.78 | 87.22 |
| 7d_15C | Seven days - 15 degrees Celsius | 75.55 | 46.23 | 104.87 |
| 7d_30C | Seven days - 30 degrees Celsius | 43.06 | 25.51 | 60.61 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.897025 | no |
| 3d_25C | 7d_25C | 0.834396 | no |
| 3d_25C | 7d_15C | 0.300043 | no |
| 3d_25C | 7d_30C | 0.158622 | no |
| 3d_25C | 10d_25C | 0.871704 | no |
| 5d_25C | 7d_25C | 0.950144 | no |
| 5d_25C | 7d_15C | 0.206957 | no |
| 5d_25C | 7d_30C | 0.236356 | no |
| 5d_25C | 10d_25C | 0.745252 | no |
| 7d_25C | 7d_15C | 0.168419 | no |
| 7d_25C | 7d_30C | 0.285653 | no |
| 7d_25C | 10d_25C | 0.677799 | no |
| 7d_15C | 7d_30C | 0.007779 | yes |
| 7d_15C | 10d_25C | 0.446827 | no |
| 7d_30C | 10d_25C | 0.096455 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g741.t1 MSSETLTRAEVAKHNTEDSLWCIIDHQVYDLTDFVDAHPGGAVVLAQIAGQDATSDFYNLHRQEVLEKYRDQLCI GVIEGEKPEVIVPVPGGLSPVPYAEPLWLRPQFKSPYYKESHRRLQKAVREFTDKYVTPEAQEKERDGTYISQEL INRMAETNLLAMRLGPGKHLHGRTLLGGVVDGKEFDYLHDMIVTQELVRANARGFQDGNMAGMAISLTAVQQWLH DPVLKERINGEVLSGQKKMCLAVTEAFAGSDVAGLKTTAEKTPDGKHYIVNGTKKWITNGMFADYFVTACRTEKG FSVLLIPRGEGVETKQIKTSYSTAAGTAFVQYENVKVPVQNLLGEEHKGFLVIMSNFNHERFMMVAAVVRMSMVV VEETMKWSNQRIVFGKKLIEQPVIRQKLARMISLAESNQAWLESIAYQMCNMTYAEQAKNLGGPIGLLKSHCTQA AGEIASLATNIFGGRGITQSGMGKVIEMFHRTYKFDAILGGTEEILADLGVRQAMKNFPKSML* |
| Coding | >Pro_DTO377G3_2|g741.t1 ATGTCATCAGAAACCCTGACGCGCGCGGAAGTCGCGAAGCACAACACCGAGGATTCCCTCTGGTGTATCATCGAC CACCAAGTCTATGATCTAACCGATTTTGTCGACGCCCATCCCGGTGGTGCTGTTGTACTTGCTCAGATTGCTGGC CAGGACGCAACATCCGATTTCTACAATCTGCACCGCCAGGAGGTGCTGGAGAAATACCGTGACCAGCTTTGCATT GGTGTCATCGAAGGCGAAAAGCCCGAGGTCATCGTGCCCGTCCCTGGAGGTTTGAGCCCCGTGCCCTACGCAGAA CCCCTGTGGCTGCGACCCCAGTTCAAGTCCCCATACTACAAGGAAAGCCACCGACGCTTGCAAAAGGCCGTCCGG GAGTTCACAGATAAATATGTAACGCCAGAAGCGCAAGAGAAGGAGCGGGATGGCACCTACATCAGCCAGGAGCTC ATCAATCGCATGGCCGAGACGAACCTTCTGGCTATGCGACTGGGCCCTGGAAAGCATCTGCATGGCCGCACCTTG CTCGGTGGAGTTGTGGATGGAAAGGAGTTTGATTATCTCCACGATATGATTGTAACACAGGAGTTGGTCCGTGCC AATGCGAGAGGCTTCCAGGATGGAAATATGGCAGGCATGGCTATTAGTTTGACAGCTGTCCAGCAATGGCTGCAC GATCCTGTACTCAAGGAGCGCATCAATGGCGAGGTCTTGTCCGGCCAGAAAAAGATGTGTTTGGCTGTCACGGAG GCCTTTGCTGGTAGCGACGTGGCGGGTCTGAAGACGACTGCAGAGAAGACTCCTGATGGGAAACATTATATTGTC AACGGAACAAAGAAATGGATTACAAACGGTATGTTCGCCGACTACTTTGTCACTGCCTGCCGTACCGAGAAGGGA TTCTCCGTGCTCTTGATTCCTCGCGGCGAAGGTGTGGAGACAAAGCAAATCAAGACCTCATATTCGACTGCCGCT GGTACTGCTTTCGTGCAATATGAGAATGTCAAGGTTCCGGTTCAGAACCTCCTGGGTGAGGAGCACAAAGGTTTC CTCGTTATCATGAGCAACTTCAACCACGAGCGCTTTATGATGGTAGCTGCCGTGGTCCGCATGTCAATGGTGGTT GTCGAAGAAACAATGAAATGGTCCAATCAACGCATCGTCTTTGGTAAGAAGTTGATTGAACAGCCAGTTATTCGT CAGAAGCTCGCCCGCATGATCTCCCTAGCCGAATCTAACCAGGCATGGCTTGAATCCATCGCCTATCAAATGTGC AACATGACATACGCCGAACAAGCAAAGAATCTGGGTGGACCTATCGGACTGCTCAAATCACACTGTACCCAAGCC GCAGGCGAAATTGCCAGTCTCGCTACAAACATCTTTGGTGGTCGTGGTATCACTCAGTCAGGAATGGGCAAGGTC ATTGAGATGTTCCATCGCACATACAAGTTTGATGCCATCTTGGGTGGAACTGAGGAGATTTTGGCGGATTTGGGA GTGCGGCAGGCAATGAAGAATTTCCCGAAGTCGATGTTATAG |
| Transcript | >Pro_DTO377G3_2|g741.t1 ATGTCATCAGAAACCCTGACGCGCGCGGAAGTCGCGAAGCACAACACCGAGGATTCCCTCTGGTGTATCATCGAC CACCAAGTCTATGATCTAACCGATTTTGTCGACGCCCATCCCGGTGGTGCTGTTGTACTTGCTCAGATTGCTGGC CAGGACGCAACATCCGATTTCTACAATCTGCACCGCCAGGAGGTGCTGGAGAAATACCGTGACCAGCTTTGCATT GGTGTCATCGAAGGCGAAAAGCCCGAGGTCATCGTGCCCGTCCCTGGAGGTTTGAGCCCCGTGCCCTACGCAGAA CCCCTGTGGCTGCGACCCCAGTTCAAGTCCCCATACTACAAGGAAAGCCACCGACGCTTGCAAAAGGCCGTCCGG GAGTTCACAGATAAATATGTAACGCCAGAAGCGCAAGAGAAGGAGCGGGATGGCACCTACATCAGCCAGGAGCTC ATCAATCGCATGGCCGAGACGAACCTTCTGGCTATGCGACTGGGCCCTGGAAAGCATCTGCATGGCCGCACCTTG CTCGGTGGAGTTGTGGATGGAAAGGAGTTTGATTATCTCCACGATATGATTGTAACACAGGAGTTGGTCCGTGCC AATGCGAGAGGCTTCCAGGATGGAAATATGGCAGGCATGGCTATTAGTTTGACAGCTGTCCAGCAATGGCTGCAC GATCCTGTACTCAAGGAGCGCATCAATGGCGAGGTCTTGTCCGGCCAGAAAAAGATGTGTTTGGCTGTCACGGAG GCCTTTGCTGGTAGCGACGTGGCGGGTCTGAAGACGACTGCAGAGAAGACTCCTGATGGGAAACATTATATTGTC AACGGAACAAAGAAATGGATTACAAACGGTATGTTCGCCGACTACTTTGTCACTGCCTGCCGTACCGAGAAGGGA TTCTCCGTGCTCTTGATTCCTCGCGGCGAAGGTGTGGAGACAAAGCAAATCAAGACCTCATATTCGACTGCCGCT GGTACTGCTTTCGTGCAATATGAGAATGTCAAGGTTCCGGTTCAGAACCTCCTGGGTGAGGAGCACAAAGGTTTC CTCGTTATCATGAGCAACTTCAACCACGAGCGCTTTATGATGGTAGCTGCCGTGGTCCGCATGTCAATGGTGGTT GTCGAAGAAACAATGAAATGGTCCAATCAACGCATCGTCTTTGGTAAGAAGTTGATTGAACAGCCAGTTATTCGT CAGAAGCTCGCCCGCATGATCTCCCTAGCCGAATCTAACCAGGCATGGCTTGAATCCATCGCCTATCAAATGTGC AACATGACATACGCCGAACAAGCAAAGAATCTGGGTGGACCTATCGGACTGCTCAAATCACACTGTACCCAAGCC GCAGGCGAAATTGCCAGTCTCGCTACAAACATCTTTGGTGGTCGTGGTATCACTCAGTCAGGAATGGGCAAGGTC ATTGAGATGTTCCATCGCACATACAAGTTTGATGCCATCTTGGGTGGAACTGAGGAGATTTTGGCGGATTTGGGA GTGCGGCAGGCAATGAAGAATTTCCCGAAGTCGATGTTATAG |
| Gene | >Pro_DTO377G3_2|g741.t1 ATGTCATCAGAAACCCTGACGCGCGCGGAAGTCGCGAAGCACAACACCGAGGATTCCCTCTGGTGTATCATCGAC CACCAAGTCTATGATCTAACCGATTTTGTCGACGCCCATCCCGGTGGTGCTGTTGTACTTGCTCAGATTGCTGGC CAGGACGCAACATCCGATTTCTACAATCTGCACCGCCAGGAGGTGCTGGAGAAATACCGTGACCAGCTTTGCATT GGTGTCATCGAAGGCGAAAAGCCCGAGGTCATCGTGCCCGTCCCTGGAGGTTTGAGCCCCGTGCCCTACGCAGAA CCCCTGTGGCTGCGACCCCAGTTCAAGTCCCCATACTACAAGGAAAGCCACCGACGCTTGCAAAAGGCCGTCCGG GAGTTCACAGATAAATATGTAACGCCAGAAGCGCAAGAGAAGGAGCGGGATGGCACCTACATCAGCCAGGAGCTC ATCAATCGCATGGCCGAGACGAACCTTCTGGCTATGCGACTGGGCCCTGGAAAGCATCTGCATGGCCGCACCTTG CTCGGTGGAGTTGTGGATGGAAAGGAGTTTGATTATCTCCACGATATGATTGTAACACAGGAGTTGGTCCGTGCC AATGCGAGAGGCTTCCAGGATGGAAATATGGCAGGCATGGCTATTAGTTTGACAGCTGTCCAGCAATGGCTGCAC GATCCTGTACTCAAGGAGCGCATCAATGGCGAGGTCTTGTCCGGCCAGAAAAAGATGTGTTTGGCTGTCACGGAG GCCTTTGCTGGTAGCGACGTGGCGGGTCTGAAGACGACTGCAGAGAAGACTCCTGATGGGAAACATTATATTGTC AACGGAACAAAGTCAGTCGGATCACGTTTGTTGTTTAATTGGATTTGCGCTGACAATGTCTAGGAAATGGATTAC AAACGGTATGTTCGCCGACTACTTTGTCACTGCCTGCCGTACCGAGAAGGGATTCTCCGTGCTCTTGATTCCTCG CGGCGAAGGTGTGGAGACAAAGCAAATCAAGACCTCATATTCGACTGCCGCTGGTACTGCTTTCGTGCAATATGA GAATGTCAAGGTTCCGGTTCAGAACCTCCTGGGTGAGGAGCACAAAGGTTTCCTCGTTATCATGAGCAACTTCAA CCACGAGCGCTTTATGATGGTAGCTGCCGTGGTCCGCATGTCAATGGTGGTTGTCGAAGAAACAATGAAATGGTC CAATCAACGCATCGTCTTTGGTAAGAAGTTGATTGAACAGCCAGTTATTCGTCAGAAGTGAGTTTCTTACAATCT GCTCTTAATATCCCTCTTCTAACTCCCGACAGGCTCGCCCGCATGATCTCCCTAGCCGAATCTAACCAGGCATGG CTTGAATCCATCGCCTATCAAATGTGCAACATGACATACGCCGAACAAGCAAAGAATCTGGGTGGACCTATCGGA CTGCTCAAATCACACTGTACCCAAGCCGCAGGCGAAATTGCCAGTCTCGCTACAAACATCTTTGGTGGTCGTGGT ATCACTCAGTCAGGAATGGGCAAGGTCATTGAGATGTTCCATCGCACATACAAGTTTGATGCCATCTTGGGTGGA ACTGAGGAGATTTTGGCGGATTTGGGAGTGCGGCAGGCAATGAAGAATTTCCCGAAGTCGATGTTATAG |