© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7399.t1 |
| Gene name | |
| Location | scaffold_23:65410..66061 |
| Strand | - |
| Gene length (bp) | 651 |
| Transcript length (bp) | 651 |
| Coding sequence length (bp) | 651 |
| Protein length (aa) | 217 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00043 | GST_C | Glutathione S-transferase, C-terminal domain | 9.6E-15 | 114 | 200 |
| PF02798 | GST_N | Glutathione S-transferase, N-terminal domain | 5.3E-14 | 5 | 78 |
| PF13409 | GST_N_2 | Glutathione S-transferase, N-terminal domain | 2.2E-12 | 15 | 77 |
| PF13417 | GST_N_3 | Glutathione S-transferase, N-terminal domain | 4.6E-12 | 9 | 82 |
| PF14497 | GST_C_3 | Glutathione S-transferase, C-terminal domain | 8.7E-09 | 132 | 204 |
| PF13410 | GST_C_2 | Glutathione S-transferase, C-terminal domain | 3.5E-08 | 131 | 194 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0006749 | glutathione metabolic process | Yes |
| GO:0034641 | cellular nitrogen compound metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0005488 | binding | No |
| GO:0009987 | cellular process | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0044237 | cellular metabolic process | No |
| GO:0043603 | cellular amide metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0006518 | peptide metabolic process | No |
| GO:0006790 | sulfur compound metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0006575 | cellular modified amino acid metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 72.34 | 38.66 | 106.02 |
| 5d_25C | Five days - 25 degrees Celsius | 76.85 | 41.58 | 112.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 82.22 | 45.10 | 119.35 |
| 10d_25C | Ten days - 25 degrees Celsius | 97.07 | 55.00 | 139.13 |
| 7d_15C | Seven days - 15 degrees Celsius | 98.24 | 55.75 | 140.73 |
| 7d_30C | Seven days - 30 degrees Celsius | 78.68 | 42.53 | 114.83 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.874504 | no |
| 3d_25C | 7d_25C | 0.699089 | no |
| 3d_25C | 7d_15C | 0.235533 | no |
| 3d_25C | 7d_30C | 0.817001 | no |
| 3d_25C | 10d_25C | 0.261844 | no |
| 5d_25C | 7d_25C | 0.855756 | no |
| 5d_25C | 7d_15C | 0.374593 | no |
| 5d_25C | 7d_30C | 0.953590 | no |
| 5d_25C | 10d_25C | 0.400246 | no |
| 7d_25C | 7d_15C | 0.544081 | no |
| 7d_25C | 7d_30C | 0.910154 | no |
| 7d_25C | 10d_25C | 0.572129 | no |
| 7d_15C | 7d_30C | 0.433408 | no |
| 7d_15C | 10d_25C | 0.974620 | no |
| 7d_30C | 10d_25C | 0.464072 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7399.t1 MSLKPITVYGHATGPNPWKVIMILEELDIPYIHKFINFADMKKEPFESINPNGRVPAIEDPNTDTTLWESGAILE YLVDTYDKQNTISFATGSKDYYLAKQWLHFQVSGQGPYFGQAVWFSRYHPEKVQSAIDRYVSEIRRVSGVLNRAL QGKQYLVGDKFSYVDAAFVPWYQITGRFGIDMGKEFPNVAAWLKLVQERPAIAKTVQDRAEASAQQ* |
| Coding | >Pro_DTO377G3_2|g7399.t1 ATGTCACTCAAGCCTATCACCGTCTACGGGCATGCCACGGGCCCCAATCCCTGGAAAGTGATCATGATCCTGGAA GAGCTGGATATCCCCTACATCCACAAGTTCATAAACTTCGCAGATATGAAGAAAGAGCCATTCGAGTCCATCAAT CCCAACGGACGCGTCCCCGCGATTGAAGACCCCAATACAGACACCACCCTTTGGGAATCCGGCGCGATTCTCGAA TACTTGGTTGACACATACGACAAGCAAAACACCATCAGCTTTGCCACCGGCTCCAAGGACTACTACCTCGCCAAG CAATGGCTTCACTTCCAGGTGTCCGGTCAAGGCCCATACTTCGGCCAGGCTGTTTGGTTTAGCCGCTACCACCCA GAGAAGGTGCAAAGCGCAATCGACCGCTATGTCAGCGAAATCCGCCGTGTTTCTGGCGTGCTCAACCGGGCCCTC CAGGGGAAGCAGTATCTCGTCGGTGACAAGTTCTCATATGTCGATGCTGCTTTTGTTCCTTGGTATCAGATTACT GGCCGGTTTGGGATTGATATGGGGAAGGAGTTCCCCAATGTCGCTGCTTGGTTGAAACTGGTGCAGGAACGTCCT GCTATTGCTAAAACGGTTCAGGACCGGGCCGAGGCCTCCGCGCAGCAGTAG |
| Transcript | >Pro_DTO377G3_2|g7399.t1 ATGTCACTCAAGCCTATCACCGTCTACGGGCATGCCACGGGCCCCAATCCCTGGAAAGTGATCATGATCCTGGAA GAGCTGGATATCCCCTACATCCACAAGTTCATAAACTTCGCAGATATGAAGAAAGAGCCATTCGAGTCCATCAAT CCCAACGGACGCGTCCCCGCGATTGAAGACCCCAATACAGACACCACCCTTTGGGAATCCGGCGCGATTCTCGAA TACTTGGTTGACACATACGACAAGCAAAACACCATCAGCTTTGCCACCGGCTCCAAGGACTACTACCTCGCCAAG CAATGGCTTCACTTCCAGGTGTCCGGTCAAGGCCCATACTTCGGCCAGGCTGTTTGGTTTAGCCGCTACCACCCA GAGAAGGTGCAAAGCGCAATCGACCGCTATGTCAGCGAAATCCGCCGTGTTTCTGGCGTGCTCAACCGGGCCCTC CAGGGGAAGCAGTATCTCGTCGGTGACAAGTTCTCATATGTCGATGCTGCTTTTGTTCCTTGGTATCAGATTACT GGCCGGTTTGGGATTGATATGGGGAAGGAGTTCCCCAATGTCGCTGCTTGGTTGAAACTGGTGCAGGAACGTCCT GCTATTGCTAAAACGGTTCAGGACCGGGCCGAGGCCTCCGCGCAGCAGTAG |
| Gene | >Pro_DTO377G3_2|g7399.t1 ATGTCACTCAAGCCTATCACCGTCTACGGGCATGCCACGGGCCCCAATCCCTGGAAAGTGATCATGATCCTGGAA GAGCTGGATATCCCCTACATCCACAAGTTCATAAACTTCGCAGATATGAAGAAAGAGCCATTCGAGTCCATCAAT CCCAACGGACGCGTCCCCGCGATTGAAGACCCCAATACAGACACCACCCTTTGGGAATCCGGCGCGATTCTCGAA TACTTGGTTGACACATACGACAAGCAAAACACCATCAGCTTTGCCACCGGCTCCAAGGACTACTACCTCGCCAAG CAATGGCTTCACTTCCAGGTGTCCGGTCAAGGCCCATACTTCGGCCAGGCTGTTTGGTTTAGCCGCTACCACCCA GAGAAGGTGCAAAGCGCAATCGACCGCTATGTCAGCGAAATCCGCCGTGTTTCTGGCGTGCTCAACCGGGCCCTC CAGGGGAAGCAGTATCTCGTCGGTGACAAGTTCTCATATGTCGATGCTGCTTTTGTTCCTTGGTATCAGATTACT GGCCGGTTTGGGATTGATATGGGGAAGGAGTTCCCCAATGTCGCTGCTTGGTTGAAACTGGTGCAGGAACGTCCT GCTATTGCTAAAACGGTTCAGGACCGGGCCGAGGCCTCCGCGCAGCAGTAG |