© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7392.t1 |
| Gene name | |
| Location | scaffold_23:39295..40942 |
| Strand | - |
| Gene length (bp) | 1647 |
| Transcript length (bp) | 1593 |
| Coding sequence length (bp) | 1593 |
| Protein length (aa) | 531 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF09949 | APP1_cat | Phosphatidate phosphatase APP1, catalytic domain | 4.6E-35 | 276 | 420 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008195 | phosphatidate phosphatase activity | Yes |
| GO:0016791 | phosphatase activity | No |
| GO:0016788 | hydrolase activity, acting on ester bonds | No |
| GO:0042578 | phosphoric ester hydrolase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 21 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 31.24 | 17.77 | 44.71 |
| 5d_25C | Five days - 25 degrees Celsius | 25.53 | 13.95 | 37.11 |
| 7d_25C | Seven days - 25 degrees Celsius | 23.34 | 12.52 | 34.17 |
| 10d_25C | Ten days - 25 degrees Celsius | 26.60 | 14.54 | 38.65 |
| 7d_15C | Seven days - 15 degrees Celsius | 43.92 | 25.94 | 61.89 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.69 | 10.79 | 30.59 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.471672 | no |
| 3d_25C | 7d_25C | 0.267440 | no |
| 3d_25C | 7d_15C | 0.148176 | no |
| 3d_25C | 7d_30C | 0.094678 | no |
| 3d_25C | 10d_25C | 0.582823 | no |
| 5d_25C | 7d_25C | 0.803801 | no |
| 5d_25C | 7d_15C | 0.018295 | yes |
| 5d_25C | 7d_30C | 0.474630 | no |
| 5d_25C | 10d_25C | 0.913939 | no |
| 7d_25C | 7d_15C | 0.005626 | yes |
| 7d_25C | 7d_30C | 0.723578 | no |
| 7d_25C | 10d_25C | 0.684778 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.024892 | yes |
| 7d_30C | 10d_25C | 0.371081 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7392.t1 MRYILAHALVQASLLSITSASPAPTAFANIAPPDPVVTPSPVEHIPSPIVGRNILSDVDSDIKNVLSGLGSDLPT WVASGVPNFFQGFPTKDAVASSLGLDSSDLAALPTNVLNIDPYANWTKSGWNVRFHGNVYKQPNTSVSKLNDLAD IFLVNTKIADLPQSQQVQARNLTAEIFVVQQPHVAVNKIHIKPAVSQGSSGQPGGGGSSNTSGGTQDITLPYNTT AEGDFDTFVQIESNGLTAGNETSAIQRLDTHVEGASIGNATAYLVPPTGLTVISDIDDILRVTKIYEPAQGLLNS FARPFTAWQNMPDIYRNWSISLPDTHFHYLTTTPEQVTRNYMQFIYTTYPGGSFDTRPLNFSDVSATLSIRMFLL QKIFETFPERKFVLVADTSNSDVMRDYPKLATEFPSQVQCIFLRNTSATDSGDKFPYDTSGFKGLKQSKYMFFVN ADDLTNLDIANGHCYNQSVAQNLTFSYQGLPFGLGDTPTAVNASANQTGAASGLLTKESAGAQGFMTLIAAMFTA AFMVL* |
| Coding | >Pro_DTO377G3_2|g7392.t1 ATGAGGTACATTCTGGCACATGCCCTCGTACAGGCCTCACTTCTCTCAATTACCTCCGCCTCCCCGGCTCCAACT GCTTTCGCCAATATCGCTCCACCCGATCCCGTCGTTACACCTTCCCCGGTCGAGCATATCCCTTCTCCCATTGTT GGCCGAAACATCTTGAGCGACGTTGATTCTGATATCAAAAATGTCCTTTCGGGGCTTGGGTCTGATCTACCTACA TGGGTCGCATCTGGAGTGCCCAACTTCTTCCAGGGGTTCCCGACTAAAGACGCAGTTGCGAGCTCCCTCGGATTG GACAGCTCAGACTTGGCGGCATTACCAACCAATGTGTTGAACATCGACCCTTATGCGAACTGGACCAAGTCGGGC TGGAACGTTCGCTTCCACGGAAACGTTTACAAGCAGCCGAACACATCTGTCTCCAAGTTGAACGATTTAGCCGAT ATCTTCCTCGTCAACACTAAAATCGCGGACCTTCCTCAATCCCAGCAGGTCCAGGCACGAAATCTGACTGCCGAG ATCTTTGTCGTGCAGCAGCCACATGTTGCGGTGAACAAGATCCACATCAAGCCTGCGGTTAGTCAGGGATCCAGC GGACAGCCAGGCGGCGGCGGATCATCCAACACATCAGGCGGTACACAAGACATCACCCTACCTTACAACACAACA GCCGAAGGTGACTTCGACACCTTTGTGCAGATTGAAAGCAATGGTCTTACTGCGGGAAATGAAACCTCGGCAATT CAGAGACTGGACACTCATGTCGAGGGCGCAAGTATCGGAAATGCTACCGCCTATCTTGTGCCTCCAACCGGACTC ACCGTGATTTCTGACATTGACGATATTCTGCGTGTCACTAAGATTTACGAACCGGCGCAAGGACTACTCAATTCG TTCGCTCGTCCATTCACGGCTTGGCAGAACATGCCGGATATTTACCGCAACTGGTCCATCAGCCTCCCCGATACG CATTTCCACTATCTTACCACCACCCCCGAGCAAGTTACTAGAAACTACATGCAGTTCATCTACACCACCTACCCC GGCGGCTCCTTCGACACCCGTCCGCTCAACTTTAGCGACGTGTCTGCCACTCTGTCGATCCGCATGTTCTTATTG CAAAAGATTTTCGAAACCTTCCCGGAGCGCAAATTCGTCCTGGTCGCAGACACCAGCAACAGCGACGTCATGCGC GATTACCCGAAACTGGCCACCGAATTCCCGTCACAAGTCCAATGTATTTTCCTTCGCAACACTTCGGCAACCGAT TCGGGCGACAAGTTCCCCTACGACACGTCCGGATTCAAGGGCCTCAAGCAGTCAAAGTATATGTTCTTCGTGAAC GCGGATGACCTCACCAACCTGGACATCGCAAACGGACACTGTTACAATCAGTCGGTTGCACAGAACCTGACGTTC AGCTACCAGGGATTGCCATTTGGACTGGGGGATACTCCAACTGCTGTCAACGCGTCAGCGAATCAAACTGGAGCG GCTAGCGGACTCTTAACCAAGGAGTCGGCTGGTGCGCAGGGCTTCATGACATTGATCGCAGCGATGTTTACGGCC GCCTTTATGGTTTTATAG |
| Transcript | >Pro_DTO377G3_2|g7392.t1 ATGAGGTACATTCTGGCACATGCCCTCGTACAGGCCTCACTTCTCTCAATTACCTCCGCCTCCCCGGCTCCAACT GCTTTCGCCAATATCGCTCCACCCGATCCCGTCGTTACACCTTCCCCGGTCGAGCATATCCCTTCTCCCATTGTT GGCCGAAACATCTTGAGCGACGTTGATTCTGATATCAAAAATGTCCTTTCGGGGCTTGGGTCTGATCTACCTACA TGGGTCGCATCTGGAGTGCCCAACTTCTTCCAGGGGTTCCCGACTAAAGACGCAGTTGCGAGCTCCCTCGGATTG GACAGCTCAGACTTGGCGGCATTACCAACCAATGTGTTGAACATCGACCCTTATGCGAACTGGACCAAGTCGGGC TGGAACGTTCGCTTCCACGGAAACGTTTACAAGCAGCCGAACACATCTGTCTCCAAGTTGAACGATTTAGCCGAT ATCTTCCTCGTCAACACTAAAATCGCGGACCTTCCTCAATCCCAGCAGGTCCAGGCACGAAATCTGACTGCCGAG ATCTTTGTCGTGCAGCAGCCACATGTTGCGGTGAACAAGATCCACATCAAGCCTGCGGTTAGTCAGGGATCCAGC GGACAGCCAGGCGGCGGCGGATCATCCAACACATCAGGCGGTACACAAGACATCACCCTACCTTACAACACAACA GCCGAAGGTGACTTCGACACCTTTGTGCAGATTGAAAGCAATGGTCTTACTGCGGGAAATGAAACCTCGGCAATT CAGAGACTGGACACTCATGTCGAGGGCGCAAGTATCGGAAATGCTACCGCCTATCTTGTGCCTCCAACCGGACTC ACCGTGATTTCTGACATTGACGATATTCTGCGTGTCACTAAGATTTACGAACCGGCGCAAGGACTACTCAATTCG TTCGCTCGTCCATTCACGGCTTGGCAGAACATGCCGGATATTTACCGCAACTGGTCCATCAGCCTCCCCGATACG CATTTCCACTATCTTACCACCACCCCCGAGCAAGTTACTAGAAACTACATGCAGTTCATCTACACCACCTACCCC GGCGGCTCCTTCGACACCCGTCCGCTCAACTTTAGCGACGTGTCTGCCACTCTGTCGATCCGCATGTTCTTATTG CAAAAGATTTTCGAAACCTTCCCGGAGCGCAAATTCGTCCTGGTCGCAGACACCAGCAACAGCGACGTCATGCGC GATTACCCGAAACTGGCCACCGAATTCCCGTCACAAGTCCAATGTATTTTCCTTCGCAACACTTCGGCAACCGAT TCGGGCGACAAGTTCCCCTACGACACGTCCGGATTCAAGGGCCTCAAGCAGTCAAAGTATATGTTCTTCGTGAAC GCGGATGACCTCACCAACCTGGACATCGCAAACGGACACTGTTACAATCAGTCGGTTGCACAGAACCTGACGTTC AGCTACCAGGGATTGCCATTTGGACTGGGGGATACTCCAACTGCTGTCAACGCGTCAGCGAATCAAACTGGAGCG GCTAGCGGACTCTTAACCAAGGAGTCGGCTGGTGCGCAGGGCTTCATGACATTGATCGCAGCGATGTTTACGGCC GCCTTTATGGTTTTATAG |
| Gene | >Pro_DTO377G3_2|g7392.t1 ATGAGGTACATTCTGGCACATGCCCTCGTACAGGCCTCACTTCTCTCAATTACCTCCGCCTCCCCGGCTCCAACT GCTTTCGCCAATATCGCTCCACCCGATCCCGTCGTTACACCTTCCCCGGTCGAGCATATCCCTTCTCCCATTGTT GGCCGAAACATCTTGAGCGACGTTGATTCTGATATCAAAAATGTCCTTTCGGGGCTTGGGTCTGATCTACCTACA TGGGTCGCATCTGGAGTGCCCAACTTCTTCCAGGGGTTCCCGACTAAAGACGCAGTTGCGAGCTCCCTCGGATTG GACAGCTCAGACTTGGCGGCATTACCAACCAATGTGTTGAACATCGACCCTTATGCGAACTGGACCAAGTCGGGC TGGAACGTTCGCTTCCACGGAAACGTTTACAAGCAGCCGAACACATCTGTCTCCAAGTTGAACGATTTAGCCGAT ATCTTCCTCGTCAACACTAAAATCGCGGACCTTCCTCAATCCCAGCAGGTCCAGGCACGAAATCTGACTGCCGAG ATCTTTGTCGTGCAGCAGCCACATGTTGCGGTGAACAAGATCCACATCAAGCCTGCGGTTAGTCAGGGATCCAGC GGACAGCCAGGCGGCGGCGGATCATCCAACACATCAGGCGGTACACAAGACATCACCCTACCTTACAACACAACA GCCGAAGGTGACTTCGACACCTTTGTGCAGATTGAAAGCAATGGTCTTACTGCGGGAAATGAAACCTCGGCAATT CAGAGACTGGACACTCATGTCGAGGGCGCAAGTATCGGAAATGCTACCGCCTATCTTGTGCCTCCAACCGGACTC ACCGTGATTTCTGACATTGACGATATTCTGCGTGTCACTAAGATTTACGAACCGGCGCAAGGACTACTCAATTCG TTCGCTCGTCCATTCACGGCTTGGCAGAACATGCCGGATATTTACCGCAACTGGTCCATCAGCCTCCCCGATACG CATTTCCACTATCTTGTAAGGCTCCTCTGGCTCCCCTTTTCTTAATAAAAATACTAATAGTCATTCCAGACCACC ACCCCCGAGCAAGTTACTAGAAACTACATGCAGTTCATCTACACCACCTACCCCGGCGGCTCCTTCGACACCCGT CCGCTCAACTTTAGCGACGTGTCTGCCACTCTGTCGATCCGCATGTTCTTATTGCAAAAGATTTTCGAAACCTTC CCGGAGCGCAAATTCGTCCTGGTCGCAGACACCAGCAACAGCGACGTCATGCGCGATTACCCGAAACTGGCCACC GAATTCCCGTCACAAGTCCAATGTATTTTCCTTCGCAACACTTCGGCAACCGATTCGGGCGACAAGTTCCCCTAC GACACGTCCGGATTCAAGGGCCTCAAGCAGTCAAAGTATATGTTCTTCGTGAACGCGGATGACCTCACCAACCTG GACATCGCAAACGGACACTGTTACAATCAGTCGGTTGCACAGAACCTGACGTTCAGCTACCAGGGATTGCCATTT GGACTGGGGGATACTCCAACTGCTGTCAACGCGTCAGCGAATCAAACTGGAGCGGCTAGCGGACTCTTAACCAAG GAGTCGGCTGGTGCGCAGGGCTTCATGACATTGATCGCAGCGATGTTTACGGCCGCCTTTATGGTTTTATAG |