© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g739.t1 |
| Gene name | |
| Location | scaffold_01:1895747..1897030 |
| Strand | - |
| Gene length (bp) | 1283 |
| Transcript length (bp) | 990 |
| Coding sequence length (bp) | 990 |
| Protein length (aa) | 330 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00149 | Metallophos | Calcineurin-like phosphoesterase | 4.3E-38 | 71 | 262 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016787 | hydrolase activity | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 12 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 157.18 | 96.46 | 217.90 |
| 5d_25C | Five days - 25 degrees Celsius | 157.26 | 96.70 | 217.81 |
| 7d_25C | Seven days - 25 degrees Celsius | 167.72 | 103.07 | 232.36 |
| 10d_25C | Ten days - 25 degrees Celsius | 174.34 | 107.08 | 241.59 |
| 7d_15C | Seven days - 15 degrees Celsius | 192.42 | 118.06 | 266.78 |
| 7d_30C | Seven days - 30 degrees Celsius | 145.23 | 89.22 | 201.25 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.998349 | no |
| 3d_25C | 7d_25C | 0.825158 | no |
| 3d_25C | 7d_15C | 0.395155 | no |
| 3d_25C | 7d_30C | 0.781482 | no |
| 3d_25C | 10d_25C | 0.710576 | no |
| 5d_25C | 7d_25C | 0.829813 | no |
| 5d_25C | 7d_15C | 0.396827 | no |
| 5d_25C | 7d_30C | 0.787139 | no |
| 5d_25C | 10d_25C | 0.719830 | no |
| 7d_25C | 7d_15C | 0.596775 | no |
| 7d_25C | 7d_30C | 0.577913 | no |
| 7d_25C | 10d_25C | 0.907092 | no |
| 7d_15C | 7d_30C | 0.204629 | no |
| 7d_15C | 10d_25C | 0.729648 | no |
| 7d_30C | 10d_25C | 0.456499 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g739.t1 MDNNMEIDTARSPEPHHLSPTSDPGSIPTLDGWIESLMTCKQLAEEDVRRLCDRAREVLQEESNVQPVKCPVTVC GDIHGQFHDLMELFRIGGPNPDTNYLFMGDYVDRGYYSVETVTLLVSLKIRYPQRITILRGNHESRQITQVYGFY DECLRKYGNANVWKYFTDLFDYLPLTALIENQIFCLHGGLSPSIDTLDNIRSLDRIQEVPHEGPMCDLLWSDPDD RCGWGISPRGAGYTFGQDISEAFNHNNGLTLVARAHQLVMEGYNWSQDRNVVTIFSAPNYCYRCGNQAAIMEIDE HLKYTFLQFDPCPRAGEPMVSRRTPDYFL* |
| Coding | >Pro_DTO377G3_2|g739.t1 ATGGATAACAACATGGAAATCGATACTGCGCGGTCCCCCGAGCCACACCACTTGTCGCCAACAAGCGACCCTGGG TCCATACCGACTTTGGACGGCTGGATCGAGAGTTTGATGACTTGCAAGCAATTAGCAGAAGAAGACGTGCGGCGG CTGTGCGATCGGGCAAGAGAGGTATTGCAGGAGGAATCCAATGTGCAGCCAGTGAAATGCCCAGTGACAGTCTGC GGTGACATACACGGACAGTTCCATGACTTAATGGAGCTTTTCCGCATTGGCGGTCCTAATCCGGATACAAACTAC CTCTTCATGGGTGACTACGTCGACCGTGGTTACTACTCAGTTGAGACAGTGACCCTCCTGGTCTCCCTGAAGATC CGTTACCCGCAGCGTATTACGATTCTTCGTGGAAACCACGAGTCCCGACAGATCACACAGGTCTACGGATTCTAT GACGAATGTCTCCGCAAATACGGCAATGCCAACGTGTGGAAATACTTCACCGACCTTTTCGACTACCTTCCCCTT ACTGCTCTCATCGAAAACCAGATTTTCTGTCTTCACGGTGGACTGAGTCCATCCATTGACACTCTCGACAACATC CGGTCGCTTGATCGCATCCAAGAAGTTCCCCACGAGGGTCCCATGTGTGATTTGCTCTGGAGTGATCCTGATGAC CGATGCGGATGGGGAATCTCTCCCCGTGGTGCTGGATACACATTCGGACAGGACATTTCCGAGGCATTCAACCAC AACAATGGCTTGACTCTTGTGGCACGTGCCCATCAATTGGTGATGGAAGGATATAACTGGTCACAGGATCGGAAC GTCGTCACTATTTTCTCAGCACCAAATTACTGTTACCGCTGCGGCAACCAGGCCGCCATTATGGAGATTGACGAG CATTTGAAATACACATTCCTACAATTCGACCCCTGCCCCCGAGCGGGAGAACCTATGGTATCGAGGCGCACACCT GACTATTTCCTTTGA |
| Transcript | >Pro_DTO377G3_2|g739.t1 ATGGATAACAACATGGAAATCGATACTGCGCGGTCCCCCGAGCCACACCACTTGTCGCCAACAAGCGACCCTGGG TCCATACCGACTTTGGACGGCTGGATCGAGAGTTTGATGACTTGCAAGCAATTAGCAGAAGAAGACGTGCGGCGG CTGTGCGATCGGGCAAGAGAGGTATTGCAGGAGGAATCCAATGTGCAGCCAGTGAAATGCCCAGTGACAGTCTGC GGTGACATACACGGACAGTTCCATGACTTAATGGAGCTTTTCCGCATTGGCGGTCCTAATCCGGATACAAACTAC CTCTTCATGGGTGACTACGTCGACCGTGGTTACTACTCAGTTGAGACAGTGACCCTCCTGGTCTCCCTGAAGATC CGTTACCCGCAGCGTATTACGATTCTTCGTGGAAACCACGAGTCCCGACAGATCACACAGGTCTACGGATTCTAT GACGAATGTCTCCGCAAATACGGCAATGCCAACGTGTGGAAATACTTCACCGACCTTTTCGACTACCTTCCCCTT ACTGCTCTCATCGAAAACCAGATTTTCTGTCTTCACGGTGGACTGAGTCCATCCATTGACACTCTCGACAACATC CGGTCGCTTGATCGCATCCAAGAAGTTCCCCACGAGGGTCCCATGTGTGATTTGCTCTGGAGTGATCCTGATGAC CGATGCGGATGGGGAATCTCTCCCCGTGGTGCTGGATACACATTCGGACAGGACATTTCCGAGGCATTCAACCAC AACAATGGCTTGACTCTTGTGGCACGTGCCCATCAATTGGTGATGGAAGGATATAACTGGTCACAGGATCGGAAC GTCGTCACTATTTTCTCAGCACCAAATTACTGTTACCGCTGCGGCAACCAGGCCGCCATTATGGAGATTGACGAG CATTTGAAATACACATTCCTACAATTCGACCCCTGCCCCCGAGCGGGAGAACCTATGGTATCGAGGCGCACACCT GACTATTTCCTTTGA |
| Gene | >Pro_DTO377G3_2|g739.t1 ATGGATAACAACATGGAAATCGATACTGCGCGGTCCCCCGAGCCACACCACTTGTCGCCAACAAGCGACCCTGGG TCCATACCGACTTTGGACGGCTGGATCGAGAGTTTGATGACTTGCAAGCAATTAGCAGAAGAAGACGTGCGGCGG CTGTGCGATCGGGTGGGTCCCTTGTTTTGACAGAGTGGTAATGATGAATTCAAGTTGATCATATGTGTCGTCCAG GCAAGAGAGGTATTGCAGGAGGAATCCAATGTGCAGCCAGTGGTATGTTGTTCTCGGTCGGGAGGTTGTCCTGAT CGCCCAGCCCACTGACATATATCCGAATAGAAATGCCCAGTGACAGTCTGCGGTGACATACACGGACAGTTCCAT GACTTAATGGAGCTTTTCCGCATTGGCGGTCCTAATCCGGATACAAACTACCTCTTCATGGGTGAGTGGATAACG GTCGGGTCAACGCGTTGTGGGGTAATGTTTTTTAATCTTTCTTGATATAGGTGACTACGTCGACCGTGGTTACTA CTCAGTTGAGACAGTGACCCTCCTGGTCTCCCTGAAGATCCGTTACCCGCAGCGTATTACGATTCTTCGTGGAAA CCACGAGTCCCGACAGATCACACAGGTCTACGGATTCTATGACGAATGTCTCCGCAAATACGGCAATGCCAACGT GTGGAAATACTTCACCGACCTTTTCGACTACCTTCCCCTTACTGCTCTCATCGAAAACCAGATTTTCTGTCTTCA CGGTGGACTGAGTCCATCCATTGACACTCTCGACAACATCCGGTCGCTTGATCGCATCCAAGAAGTTCCCCACGA GGGTCCCATGTGTGATTTGCTCTGGAGTGATCCTGATGACCGATGCGGATGGGGAATCTCTCCCCGTGGTGCTGG ATACACATTCGGACAGGACATTTCCGAGGCATTCAACCACAACAATGGCTTGACTCTTGTGGCACGTGCCCATCA ATTGGTGATGGAAGGATATAACTGGTCACAGGATCGGAACGTCGTCACTATTTTCTCAGGTATATTCTTATTCGC AAGACTTGATGGACCAAAAGCACTAACCAGACCACAGCACCAAATTACTGTTACCGCTGCGGCAACCAGGCCGCC ATTATGGAGATTGACGAGCATTTGAAATACACATTGTGCGCACTCCTGCAATTTCTCATTTGGATATCCCACTGA CATTATCTAGCCTACAATTCGACCCCTGCCCCCGAGCGGGAGAACCTATGGTATCGAGGCGCACACCTGACTATT TCCTTTGA |