© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7385.t1 |
| Gene name | |
| Location | scaffold_23:24233..25381 |
| Strand | - |
| Gene length (bp) | 1148 |
| Transcript length (bp) | 852 |
| Coding sequence length (bp) | 852 |
| Protein length (aa) | 284 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00106 | adh_short | short chain dehydrogenase | 6.1E-11 | 36 | 164 |
| PF13561 | adh_short_C2 | Enoyl-(Acyl carrier protein) reductase | 5.4E-12 | 35 | 227 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.66 | 0.0 | 1.59 |
| 5d_25C | Five days - 25 degrees Celsius | 0.31 | 0.0 | 0.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.68 | 0.0 | 1.56 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.82 | 0.0 | 1.82 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.30 | 0.0 | 0.79 |
| 7d_30C | Seven days - 30 degrees Celsius | 0.86 | 0.0 | 1.90 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.802720 | no |
| 3d_25C | 10d_25C | 0.843099 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.314006 | no |
| 5d_25C | 10d_25C | 0.327840 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.818946 | no |
| 7d_25C | 10d_25C | 0.862433 | no |
| 7d_15C | 7d_30C | 0.308059 | no |
| 7d_15C | 10d_25C | 0.323738 | no |
| 7d_30C | 10d_25C | 0.963619 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7385.t1 MAQFGFHTTSDQAAEALNASIRNKTSKFQTKFPGSLGADTARALVAHQPAQLILASQSEKICDVIASLDIPSEIV VRALCLDLSSLETVRVAAAQVSEWVASIDVLICSAGIMATSTYQTSMDGFELQFAVNHLGHFLFANLLIEKLMAA PGGPTVVNYTSEAHSRAQMDFLDDLSYGSHGGNYNKWLAYSNSKAYNILFSVGLVQRFGVQGLRSFGVDPGIIVT TSLTRSVPPEDFIALDEKGYFVADGILSNSGLNHDAVDPDMANKLWELSEKLTGLVSE* |
| Coding | >Pro_DTO377G3_2|g7385.t1 ATGGCGCAATTCGGATTCCACACTACCTCTGATCAGGCTGCAGAAGCTCTAAATGCGTCGATTCGCAACAAGACT AGTAAGTTTCAGACTAAATTCCCCGGAAGTCTCGGTGCAGATACCGCGCGCGCCCTGGTGGCTCACCAACCAGCG CAGCTGATCCTTGCGAGCCAAAGCGAGAAGATTTGTGATGTTATCGCCTCTCTGGACATACCGTCTGAGATAGTC GTCCGAGCACTCTGCCTGGACCTCTCATCCCTTGAAACAGTTCGCGTTGCGGCGGCGCAGGTGTCGGAATGGGTA GCTTCTATTGATGTCCTGATCTGCTCCGCTGGTATCATGGCGACTTCGACCTACCAGACTTCCATGGACGGCTTC GAGCTGCAGTTTGCAGTCAACCACCTGGGCCACTTCCTCTTCGCCAACCTACTTATTGAAAAGCTTATGGCTGCG CCCGGTGGTCCAACAGTGGTGAACTATACCAGCGAGGCGCACTCGCGCGCGCAAATGGATTTCTTGGACGACCTG TCTTATGGCAGTCATGGCGGTAATTACAACAAGTGGCTAGCTTACAGCAATTCCAAGGCCTACAACATTCTTTTC TCGGTGGGTTTGGTCCAGAGGTTTGGCGTGCAAGGCCTCCGATCCTTCGGTGTTGACCCGGGTATCATCGTGACG ACTTCGTTGACGCGTAGTGTCCCACCAGAGGACTTCATCGCTCTAGATGAAAAAGGATATTTCGTCGCCGATGGC ATTCTTTCTAATAGTGGCCTAAACCATGATGCCGTGGACCCAGATATGGCGAATAAGCTATGGGAATTAAGCGAG AAGTTGACAGGACTGGTATCAGAATGA |
| Transcript | >Pro_DTO377G3_2|g7385.t1 ATGGCGCAATTCGGATTCCACACTACCTCTGATCAGGCTGCAGAAGCTCTAAATGCGTCGATTCGCAACAAGACT AGTAAGTTTCAGACTAAATTCCCCGGAAGTCTCGGTGCAGATACCGCGCGCGCCCTGGTGGCTCACCAACCAGCG CAGCTGATCCTTGCGAGCCAAAGCGAGAAGATTTGTGATGTTATCGCCTCTCTGGACATACCGTCTGAGATAGTC GTCCGAGCACTCTGCCTGGACCTCTCATCCCTTGAAACAGTTCGCGTTGCGGCGGCGCAGGTGTCGGAATGGGTA GCTTCTATTGATGTCCTGATCTGCTCCGCTGGTATCATGGCGACTTCGACCTACCAGACTTCCATGGACGGCTTC GAGCTGCAGTTTGCAGTCAACCACCTGGGCCACTTCCTCTTCGCCAACCTACTTATTGAAAAGCTTATGGCTGCG CCCGGTGGTCCAACAGTGGTGAACTATACCAGCGAGGCGCACTCGCGCGCGCAAATGGATTTCTTGGACGACCTG TCTTATGGCAGTCATGGCGGTAATTACAACAAGTGGCTAGCTTACAGCAATTCCAAGGCCTACAACATTCTTTTC TCGGTGGGTTTGGTCCAGAGGTTTGGCGTGCAAGGCCTCCGATCCTTCGGTGTTGACCCGGGTATCATCGTGACG ACTTCGTTGACGCGTAGTGTCCCACCAGAGGACTTCATCGCTCTAGATGAAAAAGGATATTTCGTCGCCGATGGC ATTCTTTCTAATAGTGGCCTAAACCATGATGCCGTGGACCCAGATATGGCGAATAAGCTATGGGAATTAAGCGAG AAGTTGACAGGACTGGTATCAGAATGA |
| Gene | >Pro_DTO377G3_2|g7385.t1 ATGGCGCAATTCGGATTCCACACTACCTCTGATCAGGCTGCAGAAGCTCTAAATGCGTCGATTCGCAACAAGACT AGTAAGTTTCAGACTAAATTGTGAGCCCCGGAGTTTGTTGCTGAGAAACTACTCTCTCGGTCATTATTACCGGTG TCAGCCCCGGAAGTCTCGGTGCAGATACCGCGCGCGCCCTGGTGGCTCACCAACCAGCGCAGCTGATCCTTGCGA GCCAAAGCGAGAAGATTTGTGATGTTATCGCCTCTCTGGACATACCGTCTGAGATAGTCGTCCGAGCACTCTGCC TGGACCTCTCATCCCTTGAAACAGTTCGCGTTGCGGCGGCGCAGGTGTCGGAATGGGTAGCTTCTATTGATGTCC TGATCTGCTCCGCTGGTATCATGGCGACTTCGACCTACCAGACTTCCATGGACGGCTTCGAGCTGCAGTTTGCAG TCAACCACCTGGGCCACTTCCTCTTCGCCAACCTACTTATTGAAAAGCTTATGGCTGCGCCCGGTGGTCCAACAG TGGTGAACTATACCAGCGAGGCGCACTCGCGCGCGCAAATGGATTTCTTGGACGACCTGTCTTATGGCAGTCATG GCGGTAATTACAACAAGTGGCTAGCTTACAGCAATTCCAAGGCCTACAACATTCTTTTCTCGGTGGGTTTGGTCC AGAGGTTTGGCGTGCAAGGCCTCCGATCCTTCGGTGTTGACCCGGGTATCATCGTGACGACTTCGTTGACGCGTA GTGTCCCACCAGAGGACTTCATCGCTCTAGGTGAGATGCGTACCCGTATGAAGTATTCATTGGTACTGGCGGCGC TTAGGTGTTCTTGGTTAGGCTAGGTTGATTAACAGGGCAAACTGAGCTCCGCCATAAAAACAAAGACTTCGGCAG AAGGGTCATCGTCTGCGATCATTGCTGCCTTTGACAAGTCACTTACTAGTAAGTGGGATTGATATCTATGGTGTT ATCCGTGACAGTGGGAAGAAGATTACTAATATTTTGATGAAGATGAAAAAGGATATTTCGTCGCCGATGGCATTC TTTCTAATAGTGGCCTAAACCATGATGCCGTGGACCCAGATATGGCGAATAAGCTATGGGAATTAAGCGAGAAGT TGACAGGACTGGTATCAGAATGA |