Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7385.t1
Gene name
Locationscaffold_23:24233..25381
Strand-
Gene length (bp)1148
Transcript length (bp)852
Coding sequence length (bp)852
Protein length (aa) 284

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00106 adh_short short chain dehydrogenase 6.1E-11 36 164
PF13561 adh_short_C2 Enoyl-(Acyl carrier protein) reductase 5.4E-12 35 227

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 17 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 0.66 0.0 1.59
5d_25C Five days - 25 degrees Celsius 0.31 0.0 0.87
7d_25C Seven days - 25 degrees Celsius 0.68 0.0 1.56
10d_25C Ten days - 25 degrees Celsius 0.82 0.0 1.82
7d_15C Seven days - 15 degrees Celsius 0.30 0.0 0.79
7d_30C Seven days - 30 degrees Celsius 0.86 0.0 1.90

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 1.000000 no
3d_25C 7d_25C 1.000000 no
3d_25C 7d_15C 1.000000 no
3d_25C 7d_30C 0.802720 no
3d_25C 10d_25C 0.843099 no
5d_25C 7d_25C 1.000000 no
5d_25C 7d_15C 1.000000 no
5d_25C 7d_30C 0.314006 no
5d_25C 10d_25C 0.327840 no
7d_25C 7d_15C 1.000000 no
7d_25C 7d_30C 0.818946 no
7d_25C 10d_25C 0.862433 no
7d_15C 7d_30C 0.308059 no
7d_15C 10d_25C 0.323738 no
7d_30C 10d_25C 0.963619 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7385.t1
MAQFGFHTTSDQAAEALNASIRNKTSKFQTKFPGSLGADTARALVAHQPAQLILASQSEKICDVIASLDIPSEIV
VRALCLDLSSLETVRVAAAQVSEWVASIDVLICSAGIMATSTYQTSMDGFELQFAVNHLGHFLFANLLIEKLMAA
PGGPTVVNYTSEAHSRAQMDFLDDLSYGSHGGNYNKWLAYSNSKAYNILFSVGLVQRFGVQGLRSFGVDPGIIVT
TSLTRSVPPEDFIALDEKGYFVADGILSNSGLNHDAVDPDMANKLWELSEKLTGLVSE*
Coding >Pro_DTO377G3_2|g7385.t1
ATGGCGCAATTCGGATTCCACACTACCTCTGATCAGGCTGCAGAAGCTCTAAATGCGTCGATTCGCAACAAGACT
AGTAAGTTTCAGACTAAATTCCCCGGAAGTCTCGGTGCAGATACCGCGCGCGCCCTGGTGGCTCACCAACCAGCG
CAGCTGATCCTTGCGAGCCAAAGCGAGAAGATTTGTGATGTTATCGCCTCTCTGGACATACCGTCTGAGATAGTC
GTCCGAGCACTCTGCCTGGACCTCTCATCCCTTGAAACAGTTCGCGTTGCGGCGGCGCAGGTGTCGGAATGGGTA
GCTTCTATTGATGTCCTGATCTGCTCCGCTGGTATCATGGCGACTTCGACCTACCAGACTTCCATGGACGGCTTC
GAGCTGCAGTTTGCAGTCAACCACCTGGGCCACTTCCTCTTCGCCAACCTACTTATTGAAAAGCTTATGGCTGCG
CCCGGTGGTCCAACAGTGGTGAACTATACCAGCGAGGCGCACTCGCGCGCGCAAATGGATTTCTTGGACGACCTG
TCTTATGGCAGTCATGGCGGTAATTACAACAAGTGGCTAGCTTACAGCAATTCCAAGGCCTACAACATTCTTTTC
TCGGTGGGTTTGGTCCAGAGGTTTGGCGTGCAAGGCCTCCGATCCTTCGGTGTTGACCCGGGTATCATCGTGACG
ACTTCGTTGACGCGTAGTGTCCCACCAGAGGACTTCATCGCTCTAGATGAAAAAGGATATTTCGTCGCCGATGGC
ATTCTTTCTAATAGTGGCCTAAACCATGATGCCGTGGACCCAGATATGGCGAATAAGCTATGGGAATTAAGCGAG
AAGTTGACAGGACTGGTATCAGAATGA
Transcript >Pro_DTO377G3_2|g7385.t1
ATGGCGCAATTCGGATTCCACACTACCTCTGATCAGGCTGCAGAAGCTCTAAATGCGTCGATTCGCAACAAGACT
AGTAAGTTTCAGACTAAATTCCCCGGAAGTCTCGGTGCAGATACCGCGCGCGCCCTGGTGGCTCACCAACCAGCG
CAGCTGATCCTTGCGAGCCAAAGCGAGAAGATTTGTGATGTTATCGCCTCTCTGGACATACCGTCTGAGATAGTC
GTCCGAGCACTCTGCCTGGACCTCTCATCCCTTGAAACAGTTCGCGTTGCGGCGGCGCAGGTGTCGGAATGGGTA
GCTTCTATTGATGTCCTGATCTGCTCCGCTGGTATCATGGCGACTTCGACCTACCAGACTTCCATGGACGGCTTC
GAGCTGCAGTTTGCAGTCAACCACCTGGGCCACTTCCTCTTCGCCAACCTACTTATTGAAAAGCTTATGGCTGCG
CCCGGTGGTCCAACAGTGGTGAACTATACCAGCGAGGCGCACTCGCGCGCGCAAATGGATTTCTTGGACGACCTG
TCTTATGGCAGTCATGGCGGTAATTACAACAAGTGGCTAGCTTACAGCAATTCCAAGGCCTACAACATTCTTTTC
TCGGTGGGTTTGGTCCAGAGGTTTGGCGTGCAAGGCCTCCGATCCTTCGGTGTTGACCCGGGTATCATCGTGACG
ACTTCGTTGACGCGTAGTGTCCCACCAGAGGACTTCATCGCTCTAGATGAAAAAGGATATTTCGTCGCCGATGGC
ATTCTTTCTAATAGTGGCCTAAACCATGATGCCGTGGACCCAGATATGGCGAATAAGCTATGGGAATTAAGCGAG
AAGTTGACAGGACTGGTATCAGAATGA
Gene >Pro_DTO377G3_2|g7385.t1
ATGGCGCAATTCGGATTCCACACTACCTCTGATCAGGCTGCAGAAGCTCTAAATGCGTCGATTCGCAACAAGACT
AGTAAGTTTCAGACTAAATTGTGAGCCCCGGAGTTTGTTGCTGAGAAACTACTCTCTCGGTCATTATTACCGGTG
TCAGCCCCGGAAGTCTCGGTGCAGATACCGCGCGCGCCCTGGTGGCTCACCAACCAGCGCAGCTGATCCTTGCGA
GCCAAAGCGAGAAGATTTGTGATGTTATCGCCTCTCTGGACATACCGTCTGAGATAGTCGTCCGAGCACTCTGCC
TGGACCTCTCATCCCTTGAAACAGTTCGCGTTGCGGCGGCGCAGGTGTCGGAATGGGTAGCTTCTATTGATGTCC
TGATCTGCTCCGCTGGTATCATGGCGACTTCGACCTACCAGACTTCCATGGACGGCTTCGAGCTGCAGTTTGCAG
TCAACCACCTGGGCCACTTCCTCTTCGCCAACCTACTTATTGAAAAGCTTATGGCTGCGCCCGGTGGTCCAACAG
TGGTGAACTATACCAGCGAGGCGCACTCGCGCGCGCAAATGGATTTCTTGGACGACCTGTCTTATGGCAGTCATG
GCGGTAATTACAACAAGTGGCTAGCTTACAGCAATTCCAAGGCCTACAACATTCTTTTCTCGGTGGGTTTGGTCC
AGAGGTTTGGCGTGCAAGGCCTCCGATCCTTCGGTGTTGACCCGGGTATCATCGTGACGACTTCGTTGACGCGTA
GTGTCCCACCAGAGGACTTCATCGCTCTAGGTGAGATGCGTACCCGTATGAAGTATTCATTGGTACTGGCGGCGC
TTAGGTGTTCTTGGTTAGGCTAGGTTGATTAACAGGGCAAACTGAGCTCCGCCATAAAAACAAAGACTTCGGCAG
AAGGGTCATCGTCTGCGATCATTGCTGCCTTTGACAAGTCACTTACTAGTAAGTGGGATTGATATCTATGGTGTT
ATCCGTGACAGTGGGAAGAAGATTACTAATATTTTGATGAAGATGAAAAAGGATATTTCGTCGCCGATGGCATTC
TTTCTAATAGTGGCCTAAACCATGATGCCGTGGACCCAGATATGGCGAATAAGCTATGGGAATTAAGCGAGAAGT
TGACAGGACTGGTATCAGAATGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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