© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7380.t1 |
| Gene name | |
| Location | scaffold_22:388992..391159 |
| Strand | - |
| Gene length (bp) | 2167 |
| Transcript length (bp) | 2061 |
| Coding sequence length (bp) | 2061 |
| Protein length (aa) | 687 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF04433 | SWIRM | SWIRM domain | 4.5E-32 | 140 | 225 |
| PF16495 | SWIRM-assoc_1 | SWIRM-associated region 1 | 2.8E-30 | 547 | 629 |
| PF00249 | Myb_DNA-binding | Myb-like DNA-binding domain | 3.1E-08 | 403 | 445 |
| PF13921 | Myb_DNA-bind_6 | Myb-like DNA-binding domain | 9.8E-06 | 404 | 445 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005515 | protein binding | Yes |
| GO:0005488 | binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 34 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 50.77 | 31.08 | 70.47 |
| 5d_25C | Five days - 25 degrees Celsius | 53.30 | 32.62 | 73.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 63.96 | 39.28 | 88.65 |
| 10d_25C | Ten days - 25 degrees Celsius | 76.35 | 46.53 | 106.18 |
| 7d_15C | Seven days - 15 degrees Celsius | 58.44 | 35.62 | 81.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 54.16 | 33.16 | 75.17 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.880984 | no |
| 3d_25C | 7d_25C | 0.319837 | no |
| 3d_25C | 7d_15C | 0.599373 | no |
| 3d_25C | 7d_30C | 0.832664 | no |
| 3d_25C | 10d_25C | 0.050334 | no |
| 5d_25C | 7d_25C | 0.460706 | no |
| 5d_25C | 7d_15C | 0.753043 | no |
| 5d_25C | 7d_30C | 0.961967 | no |
| 5d_25C | 10d_25C | 0.088027 | no |
| 7d_25C | 7d_15C | 0.752749 | no |
| 7d_25C | 7d_30C | 0.507323 | no |
| 7d_25C | 10d_25C | 0.481507 | no |
| 7d_15C | 7d_30C | 0.800975 | no |
| 7d_15C | 10d_25C | 0.250815 | no |
| 7d_30C | 10d_25C | 0.110283 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7380.t1 MDDTHINQAAAHENVQSMTGLDGAADAARGASGAQSRQNSPVKKIENTPGSDNPMYAPASPKPRHGGVEPEDEEM GGTETDAKPDTEGLEDAAGESHTQGEGTDGLEDAVGEEQPAPSKSSLEAAAREQLVTQTHAIILPSYATWFDMNT INPIEKKALAEFFNGRNRSKTPATYKDYRDFMINTYRLNPIEYLTVTACRRNLAGDVCAIMRVHSFLEQWGLINY QVDPQTRPSNIGPPFTGHFRVVADTPRGLQPFQPGPNHSVTSGKFHPGTQRAVSSIPASKDDLNLELRRTIYDEK GKDITSAKDKEKQINGEATNGLDIARESKKKAHCFSCGIDCTKLRFHYAKSASTSANAATPDTKYDLCPNCFLQA RMPSSHNASDFVKLEDKTYSHFTDKNTPWSDSEVILLLEGLENFDENWEQIASHVGTRSREECVMKFLQLEIEDK YVEDVPEPQLGSGRDPISQSENPVLSVVAFLAQMVEPAVAAAAAGRSVDEIRKELRSQLEKGHDKGKDAVKSEDS MDVDPAREAEQQSAKPKETLGTIALAASAARAGALASHEEREMTRLVSAAVNVTLQKFEIKLQQFNEMEEIIEAE RRELEQARQQLFLDRMTFKKRVKEAQDALQTVSLQGPNEHTHQMLADAATTGIGHHYSFQPVGGDMRAGTQPLSA QGGADYKTLDL* |
| Coding | >Pro_DTO377G3_2|g7380.t1 ATGGATGACACTCACATCAACCAAGCTGCGGCCCACGAGAATGTCCAGTCTATGACTGGCCTAGATGGCGCAGCT GATGCAGCTCGCGGAGCCTCTGGAGCGCAATCGCGCCAGAATTCGCCCGTGAAGAAGATTGAGAATACACCTGGG TCCGACAATCCGATGTACGCCCCAGCATCTCCCAAACCTCGCCACGGCGGGGTTGAACCGGAAGACGAAGAGATG GGTGGTACTGAGACCGATGCCAAGCCCGACACCGAAGGCTTGGAGGATGCTGCGGGCGAGTCGCATACGCAAGGA GAGGGAACAGATGGGCTTGAAGATGCTGTGGGTGAAGAACAACCCGCACCATCCAAGTCGTCTCTGGAAGCCGCC GCGCGCGAACAACTCGTCACGCAAACACACGCCATCATTCTCCCCAGCTATGCGACCTGGTTTGATATGAACACC ATTAACCCAATCGAGAAGAAAGCTCTCGCCGAATTCTTTAATGGCCGCAACCGCAGTAAGACGCCTGCTACATAC AAAGATTACCGGGACTTCATGATCAATACCTATCGATTGAACCCCATCGAGTATTTGACTGTTACTGCTTGCCGT CGCAACCTTGCCGGTGACGTCTGTGCTATTATGCGTGTTCACTCATTCCTTGAGCAGTGGGGCTTGATCAACTAC CAGGTTGACCCTCAGACACGTCCGTCCAATATTGGCCCGCCATTCACCGGTCACTTCCGAGTTGTCGCAGATACT CCACGGGGTCTGCAGCCATTCCAGCCTGGGCCAAACCACAGCGTCACGTCCGGCAAGTTTCATCCAGGCACACAG CGTGCTGTCTCTTCCATCCCTGCATCCAAAGACGACCTCAACCTCGAACTCCGCCGCACCATTTACGATGAAAAA GGCAAGGATATCACCTCCGCCAAAGATAAAGAGAAACAGATCAACGGCGAAGCAACAAACGGCTTGGACATTGCT CGGGAATCCAAGAAGAAGGCACACTGCTTCTCTTGTGGTATTGATTGCACTAAACTTCGATTCCACTACGCTAAA TCGGCTTCGACATCAGCCAATGCCGCTACGCCAGACACCAAGTATGATCTGTGTCCCAACTGTTTCCTTCAAGCG CGAATGCCTTCTAGCCACAATGCCTCGGACTTCGTTAAGCTCGAGGACAAGACCTACTCTCACTTCACTGACAAA AACACTCCATGGTCAGACTCAGAAGTGATTTTGTTGCTGGAAGGCCTGGAAAACTTCGATGAAAACTGGGAACAG ATTGCGAGCCACGTTGGCACACGATCTCGGGAAGAGTGTGTCATGAAGTTCCTACAGCTAGAGATCGAGGACAAA TACGTTGAAGATGTCCCAGAGCCGCAGTTGGGCAGCGGACGCGACCCCATCAGCCAGTCAGAAAACCCTGTTCTT TCTGTTGTGGCTTTCCTGGCCCAGATGGTGGAGCCCGCAGTAGCTGCCGCTGCCGCCGGTCGGTCCGTCGACGAG ATCCGCAAGGAGCTCCGGAGCCAGCTGGAGAAGGGGCATGACAAAGGCAAAGATGCAGTCAAGTCCGAAGATTCT ATGGACGTAGATCCCGCACGTGAGGCCGAGCAGCAATCCGCGAAGCCTAAGGAGACTCTCGGCACCATCGCCCTG GCCGCATCTGCCGCGCGTGCCGGAGCTCTTGCCTCGCACGAGGAGCGTGAAATGACCCGCCTAGTCTCTGCTGCA GTCAACGTCACCTTGCAGAAGTTTGAGATCAAGCTGCAGCAATTCAATGAGATGGAAGAGATTATCGAGGCTGAG CGTCGTGAGTTGGAGCAGGCGCGTCAGCAACTCTTCTTGGACCGGATGACATTCAAGAAGCGTGTTAAGGAGGCC CAGGATGCGCTCCAGACTGTCAGCCTGCAGGGCCCCAACGAACACACGCATCAGATGCTAGCCGATGCTGCTACT ACAGGTATTGGACACCACTACAGCTTCCAGCCTGTTGGCGGAGATATGCGGGCTGGAACCCAGCCTCTAAGCGCC CAAGGTGGTGCTGACTACAAGACCCTTGACCTGTAG |
| Transcript | >Pro_DTO377G3_2|g7380.t1 ATGGATGACACTCACATCAACCAAGCTGCGGCCCACGAGAATGTCCAGTCTATGACTGGCCTAGATGGCGCAGCT GATGCAGCTCGCGGAGCCTCTGGAGCGCAATCGCGCCAGAATTCGCCCGTGAAGAAGATTGAGAATACACCTGGG TCCGACAATCCGATGTACGCCCCAGCATCTCCCAAACCTCGCCACGGCGGGGTTGAACCGGAAGACGAAGAGATG GGTGGTACTGAGACCGATGCCAAGCCCGACACCGAAGGCTTGGAGGATGCTGCGGGCGAGTCGCATACGCAAGGA GAGGGAACAGATGGGCTTGAAGATGCTGTGGGTGAAGAACAACCCGCACCATCCAAGTCGTCTCTGGAAGCCGCC GCGCGCGAACAACTCGTCACGCAAACACACGCCATCATTCTCCCCAGCTATGCGACCTGGTTTGATATGAACACC ATTAACCCAATCGAGAAGAAAGCTCTCGCCGAATTCTTTAATGGCCGCAACCGCAGTAAGACGCCTGCTACATAC AAAGATTACCGGGACTTCATGATCAATACCTATCGATTGAACCCCATCGAGTATTTGACTGTTACTGCTTGCCGT CGCAACCTTGCCGGTGACGTCTGTGCTATTATGCGTGTTCACTCATTCCTTGAGCAGTGGGGCTTGATCAACTAC CAGGTTGACCCTCAGACACGTCCGTCCAATATTGGCCCGCCATTCACCGGTCACTTCCGAGTTGTCGCAGATACT CCACGGGGTCTGCAGCCATTCCAGCCTGGGCCAAACCACAGCGTCACGTCCGGCAAGTTTCATCCAGGCACACAG CGTGCTGTCTCTTCCATCCCTGCATCCAAAGACGACCTCAACCTCGAACTCCGCCGCACCATTTACGATGAAAAA GGCAAGGATATCACCTCCGCCAAAGATAAAGAGAAACAGATCAACGGCGAAGCAACAAACGGCTTGGACATTGCT CGGGAATCCAAGAAGAAGGCACACTGCTTCTCTTGTGGTATTGATTGCACTAAACTTCGATTCCACTACGCTAAA TCGGCTTCGACATCAGCCAATGCCGCTACGCCAGACACCAAGTATGATCTGTGTCCCAACTGTTTCCTTCAAGCG CGAATGCCTTCTAGCCACAATGCCTCGGACTTCGTTAAGCTCGAGGACAAGACCTACTCTCACTTCACTGACAAA AACACTCCATGGTCAGACTCAGAAGTGATTTTGTTGCTGGAAGGCCTGGAAAACTTCGATGAAAACTGGGAACAG ATTGCGAGCCACGTTGGCACACGATCTCGGGAAGAGTGTGTCATGAAGTTCCTACAGCTAGAGATCGAGGACAAA TACGTTGAAGATGTCCCAGAGCCGCAGTTGGGCAGCGGACGCGACCCCATCAGCCAGTCAGAAAACCCTGTTCTT TCTGTTGTGGCTTTCCTGGCCCAGATGGTGGAGCCCGCAGTAGCTGCCGCTGCCGCCGGTCGGTCCGTCGACGAG ATCCGCAAGGAGCTCCGGAGCCAGCTGGAGAAGGGGCATGACAAAGGCAAAGATGCAGTCAAGTCCGAAGATTCT ATGGACGTAGATCCCGCACGTGAGGCCGAGCAGCAATCCGCGAAGCCTAAGGAGACTCTCGGCACCATCGCCCTG GCCGCATCTGCCGCGCGTGCCGGAGCTCTTGCCTCGCACGAGGAGCGTGAAATGACCCGCCTAGTCTCTGCTGCA GTCAACGTCACCTTGCAGAAGTTTGAGATCAAGCTGCAGCAATTCAATGAGATGGAAGAGATTATCGAGGCTGAG CGTCGTGAGTTGGAGCAGGCGCGTCAGCAACTCTTCTTGGACCGGATGACATTCAAGAAGCGTGTTAAGGAGGCC CAGGATGCGCTCCAGACTGTCAGCCTGCAGGGCCCCAACGAACACACGCATCAGATGCTAGCCGATGCTGCTACT ACAGGTATTGGACACCACTACAGCTTCCAGCCTGTTGGCGGAGATATGCGGGCTGGAACCCAGCCTCTAAGCGCC CAAGGTGGTGCTGACTACAAGACCCTTGACCTGTAG |
| Gene | >Pro_DTO377G3_2|g7380.t1 ATGGATGACACTCACATCAACCAAGCTGCGGCCCACGAGAATGTCCAGTCTATGACTGGCCTAGATGGCGCAGCT GATGCAGCTCGCGGAGCCTCTGGTATGCCTACTCTCAAATGGCTTTTATGTTGCACCGAGTGCTAAATTTGTGGA CAGGAGCGCAATCGCGCCAGAATTCGCCCGTGAAGAAGATTGAGAATACACCTGGGTCCGACAATCCGATGTACG CCCCAGCATCTCCCAAACCTCGCCACGGCGGGGTTGAACCGGAAGACGAAGAGATGGGTGGTACTGAGACCGATG CCAAGCCCGACACCGAAGGCTTGGAGGATGCTGCGGGCGAGTCGCATACGCAAGGAGAGGGAACAGATGGGCTTG AAGATGCTGTGGGTGAAGAACAACCCGCACCATCCAAGTCGTCTCTGGAAGCCGCCGCGCGCGAACAACTCGTCA CGCAAACACACGCCATCATTCTCCCCAGCTATGCGACCTGGTTTGATATGAACACCATTAACCCAATCGAGAAGA AAGCTCTCGCCGAATTCTTTAATGGCCGCAACCGCAGTAAGACGCCTGCTACATACAAAGATTACCGGGACTTCA TGATCAATACCTATCGATTGAACCCCATCGAGTATTTGACTGTTACTGCTTGCCGTCGCAACCTTGCCGGTGACG TCTGTGCTATTATGCGTGTTCACTCATTCCTTGAGCAGTGGGGCTTGATCAACTACCAGGTGAATGACCGTGTTT TCCCATTCAAGCATCTTATCTAACATCTCTGCAGGTTGACCCTCAGACACGTCCGTCCAATATTGGCCCGCCATT CACCGGTCACTTCCGAGTTGTCGCAGATACTCCACGGGGTCTGCAGCCATTCCAGCCTGGGCCAAACCACAGCGT CACGTCCGGCAAGTTTCATCCAGGCACACAGCGTGCTGTCTCTTCCATCCCTGCATCCAAAGACGACCTCAACCT CGAACTCCGCCGCACCATTTACGATGAAAAAGGCAAGGATATCACCTCCGCCAAAGATAAAGAGAAACAGATCAA CGGCGAAGCAACAAACGGCTTGGACATTGCTCGGGAATCCAAGAAGAAGGCACACTGCTTCTCTTGTGGTATTGA TTGCACTAAACTTCGATTCCACTACGCTAAATCGGCTTCGACATCAGCCAATGCCGCTACGCCAGACACCAAGTA TGATCTGTGTCCCAACTGTTTCCTTCAAGCGCGAATGCCTTCTAGCCACAATGCCTCGGACTTCGTTAAGCTCGA GGACAAGACCTACTCTCACTTCACTGACAAAAACACTCCATGGTCAGACTCAGAAGTGATTTTGTTGCTGGAAGG CCTGGAAAACTTCGATGAAAACTGGGAACAGATTGCGAGCCACGTTGGCACACGATCTCGGGAAGAGTGTGTCAT GAAGTTCCTACAGCTAGAGATCGAGGACAAATACGTTGAAGATGTCCCAGAGCCGCAGTTGGGCAGCGGACGCGA CCCCATCAGCCAGTCAGAAAACCCTGTTCTTTCTGTTGTGGCTTTCCTGGCCCAGATGGTGGAGCCCGCAGTAGC TGCCGCTGCCGCCGGTCGGTCCGTCGACGAGATCCGCAAGGAGCTCCGGAGCCAGCTGGAGAAGGGGCATGACAA AGGCAAAGATGCAGTCAAGTCCGAAGATTCTATGGACGTAGATCCCGCACGTGAGGCCGAGCAGCAATCCGCGAA GCCTAAGGAGACTCTCGGCACCATCGCCCTGGCCGCATCTGCCGCGCGTGCCGGAGCTCTTGCCTCGCACGAGGA GCGTGAAATGACCCGCCTAGTCTCTGCTGCAGTCAACGTCACCTTGCAGAAGTTTGAGATCAAGCTGCAGCAATT CAATGAGATGGAAGAGATTATCGAGGCTGAGCGTCGTGAGTTGGAGCAGGCGCGTCAGCAACTCTTCTTGGACCG GATGACATTCAAGAAGCGTGTTAAGGAGGCCCAGGATGCGCTCCAGACTGTCAGCCTGCAGGGCCCCAACGAACA CACGCATCAGATGCTAGCCGATGCTGCTACTACAGGTATTGGACACCACTACAGCTTCCAGCCTGTTGGCGGAGA TATGCGGGCTGGAACCCAGCCTCTAAGCGCCCAAGGTGGTGCTGACTACAAGACCCTTGACCTGTAG |