© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7377.t1 |
| Gene name | |
| Location | scaffold_22:382146..383380 |
| Strand | + |
| Gene length (bp) | 1234 |
| Transcript length (bp) | 711 |
| Coding sequence length (bp) | 711 |
| Protein length (aa) | 237 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00137 | ATP-synt_C | ATP synthase subunit C | 3.7E-08 | 107 | 154 |
| PF00137 | ATP-synt_C | ATP synthase subunit C | 9.9E-17 | 173 | 232 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:1902600 | proton transmembrane transport | Yes |
| GO:0015078 | proton transmembrane transporter activity | Yes |
| GO:0033177 | proton-transporting two-sector ATPase complex, proton-transporting domain | Yes |
| GO:0003674 | molecular_function | No |
| GO:0055085 | transmembrane transport | No |
| GO:0006810 | transport | No |
| GO:0008150 | biological_process | No |
| GO:0005575 | cellular_component | No |
| GO:0022857 | transmembrane transporter activity | No |
| GO:0051234 | establishment of localization | No |
| GO:0098655 | cation transmembrane transport | No |
| GO:0032991 | protein-containing complex | No |
| GO:0034220 | ion transmembrane transport | No |
| GO:0008324 | cation transmembrane transporter activity | No |
| GO:0009987 | cellular process | No |
| GO:0022890 | inorganic cation transmembrane transporter activity | No |
| GO:0098660 | inorganic ion transmembrane transport | No |
| GO:0006812 | cation transport | No |
| GO:0006811 | ion transport | No |
| GO:0098662 | inorganic cation transmembrane transport | No |
| GO:0015075 | ion transmembrane transporter activity | No |
| GO:0051179 | localization | No |
| GO:0015318 | inorganic molecular entity transmembrane transporter activity | No |
| GO:0005215 | transporter activity | No |
| GO:0098796 | membrane protein complex | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 31 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 10 | 29 | 19 |
| 2 | 135 | 157 | 22 |
| 3 | 172 | 194 | 22 |
| 4 | 207 | 229 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 93.39 | 54.02 | 132.76 |
| 5d_25C | Five days - 25 degrees Celsius | 99.88 | 58.18 | 141.58 |
| 7d_25C | Seven days - 25 degrees Celsius | 100.00 | 58.29 | 141.72 |
| 10d_25C | Ten days - 25 degrees Celsius | 119.15 | 70.99 | 167.31 |
| 7d_15C | Seven days - 15 degrees Celsius | 108.19 | 63.74 | 152.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 102.86 | 60.36 | 145.36 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.841445 | no |
| 3d_25C | 7d_25C | 0.838011 | no |
| 3d_25C | 7d_15C | 0.605974 | no |
| 3d_25C | 7d_30C | 0.752508 | no |
| 3d_25C | 10d_25C | 0.324381 | no |
| 5d_25C | 7d_25C | 0.997245 | no |
| 5d_25C | 7d_15C | 0.805152 | no |
| 5d_25C | 7d_30C | 0.934737 | no |
| 5d_25C | 10d_25C | 0.512948 | no |
| 7d_25C | 7d_15C | 0.807140 | no |
| 7d_25C | 7d_30C | 0.937538 | no |
| 7d_25C | 10d_25C | 0.513073 | no |
| 7d_15C | 7d_30C | 0.880914 | no |
| 7d_15C | 10d_25C | 0.751647 | no |
| 7d_30C | 10d_25C | 0.595462 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7377.t1 MADSELAPKFAPFFSFAGIAAAMIFGFAGAVKNLLKDVREVLTLIMDSISSLEKSWYRERPQWAMNRLQWFLSVQ WFPWGLLQHLRALLRYCDISGDDNDIIYKPAGAAYGTAKSGIGIAGVGTYRADLIMKSLIPVVMSGIIAVYGLVI AVLIAGAMGPGSNESLYTGFMHLAAGMSVGLTGVAAGYTIGVVGDAGVRAYMQQSRVYVGMILILIFGEVLGLYG LIVGLILNSKS* |
| Coding | >Pro_DTO377G3_2|g7377.t1 ATGGCAGACAGCGAGCTTGCGCCCAAGTTTGCTCCGTTCTTCTCCTTCGCAGGCATTGCCGCTGCAATGATCTTC GGTTTCGCTGGGGCGGTTAAGAACCTCCTTAAGGACGTCAGGGAAGTCCTTACACTTATAATGGATAGCATATCA TCGCTAGAGAAATCGTGGTACCGTGAGAGGCCACAGTGGGCTATGAACCGGTTACAATGGTTCTTATCGGTGCAG TGGTTCCCATGGGGCCTGTTGCAACACTTGAGGGCCCTCTTACGGTACTGCGATATCTCTGGCGATGACAATGAC ATCATTTATAAGCCGGCAGGAGCAGCTTATGGCACAGCGAAGTCTGGCATTGGAATTGCAGGTGTGGGAACCTAC AGGGCCGATCTCATCATGAAGTCCCTCATTCCCGTTGTTATGTCCGGTATCATTGCAGTTTACGGTCTCGTTATC GCCGTCCTTATCGCTGGAGCAATGGGACCAGGAAGCAATGAGAGCTTGTACACAGGCTTCATGCATCTTGCCGCT GGAATGTCAGTTGGTCTTACGGGTGTGGCGGCTGGTTATACAATTGGAGTTGTGGGCGATGCAGGTGTTCGGGCA TACATGCAGCAGTCTCGGGTCTACGTGGGAATGATTCTCATACTGATTTTCGGCGAAGTTCTTGGGCTTTATGGC TTGATTGTTGGTTTGATTCTAAACTCGAAGTCTTGA |
| Transcript | >Pro_DTO377G3_2|g7377.t1 ATGGCAGACAGCGAGCTTGCGCCCAAGTTTGCTCCGTTCTTCTCCTTCGCAGGCATTGCCGCTGCAATGATCTTC GGTTTCGCTGGGGCGGTTAAGAACCTCCTTAAGGACGTCAGGGAAGTCCTTACACTTATAATGGATAGCATATCA TCGCTAGAGAAATCGTGGTACCGTGAGAGGCCACAGTGGGCTATGAACCGGTTACAATGGTTCTTATCGGTGCAG TGGTTCCCATGGGGCCTGTTGCAACACTTGAGGGCCCTCTTACGGTACTGCGATATCTCTGGCGATGACAATGAC ATCATTTATAAGCCGGCAGGAGCAGCTTATGGCACAGCGAAGTCTGGCATTGGAATTGCAGGTGTGGGAACCTAC AGGGCCGATCTCATCATGAAGTCCCTCATTCCCGTTGTTATGTCCGGTATCATTGCAGTTTACGGTCTCGTTATC GCCGTCCTTATCGCTGGAGCAATGGGACCAGGAAGCAATGAGAGCTTGTACACAGGCTTCATGCATCTTGCCGCT GGAATGTCAGTTGGTCTTACGGGTGTGGCGGCTGGTTATACAATTGGAGTTGTGGGCGATGCAGGTGTTCGGGCA TACATGCAGCAGTCTCGGGTCTACGTGGGAATGATTCTCATACTGATTTTCGGCGAAGTTCTTGGGCTTTATGGC TTGATTGTTGGTTTGATTCTAAACTCGAAGTCTTGA |
| Gene | >Pro_DTO377G3_2|g7377.t1 ATGGCAGACAGCGAGCTTGCGCCCAAGTTTGCTCCGTTCTTCTCCTTCGTGAGTTCAAGGTTCCGCGACCACTGG GGTTCATAGACTAACAGGCTTCCTATACTAGGCAGGCATTGCCGCTGCAGTGGGTTCATTCCAACCTGGTTCCGA CTAGACAATACACTAACAGTTCCCTATAGATGATCTTCGGTTGTACGTGAAATACCTCTCATGGATGGAGCTAGC TCTCCAAGGATATAACGATGAAGGCATTGGCAGTCGCTGGGGCGGTTAAGAACCTCCTTAAGGACGTCAGGGAAG TCCTTACACTTATAATGGATAGCATATCATCGCTAGAGAAATCGTGGTACCGTGAGAGGCCACAGTGGGCTATGA ACCGGTTACAATGGTTCTTATCGGTGCAGTGGTTCCCATGGGGCCTGTTGCAACACTTGAGGGCCCTCTTACGGT ACTGCGATATCTCTGGCGATGACAATGACATCATTTATAAGCGTAAGGACTTCCTTGACGTCCTTAAGGGGGTTC TTAAACGCGCCGGCGACTGCCGATGCCTTCAGTTATATCTATGTTCTAGGTATTTGGACAAACAGCTTACAATCT CACAGCGGCAGGAGCAGCTTATGGCACAGCGAAGTCTGGCATTGGAATTGCAGGTGTGGGAACCTACAGGGCCGA TCTCATCATGAAGGTAAGAACCGTTTCTCTAGGTTCCGTGATGGACAGGACGGTAGCTAACTGAGTTCATGACTG CAGTCCCTCATTCCCGTTGTTATGTCCGGTATCATTGCAGTTTACGGTCTCGTTATCGCCGTCCTTATCGCTGGA GCAATGGGACCAGGAAGCAATGAGAGCTTGTACACGTACGTTTCGAAAGTTGGGTGGATGTGGAGCTTGGCACAA GCTAATGATGCACAGAGGCTTCATGCATCTTGCCGCTGGAATGTCAGTTGGTCTTACGGGTGTGGCGGCTGGTTA TACAATTGGAGTTGTGGGCGATGCAGTAAGGACCCTATATGCGCGGCAACGTGAGAGGACTATTAAGTCCTAACA ACTACTCTAGGGTGTTCGGGCATACATGCAGCAGTCTCGGGTCTACGTGGGAATGATTCTCATACTGATTTTCGG CGAAGTTCTTGGGCTTTATGGGTATGTTTCTGAGTCGGGGTTCTTTCAGATTACCTTTACTAACATGGTCAGCTT GATTGTTGGTTTGATTCTAAACTCGAAGTCTTGA |