© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7373.t1 |
| Gene name | |
| Location | scaffold_22:371179..372086 |
| Strand | + |
| Gene length (bp) | 907 |
| Transcript length (bp) | 837 |
| Coding sequence length (bp) | 837 |
| Protein length (aa) | 279 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.0E-19 | 35 | 104 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 15.22 | 6.07 | 24.36 |
| 5d_25C | Five days - 25 degrees Celsius | 19.60 | 8.29 | 30.91 |
| 7d_25C | Seven days - 25 degrees Celsius | 21.49 | 9.24 | 33.74 |
| 10d_25C | Ten days - 25 degrees Celsius | 25.13 | 11.29 | 38.97 |
| 7d_15C | Seven days - 15 degrees Celsius | 20.51 | 8.68 | 32.35 |
| 7d_30C | Seven days - 30 degrees Celsius | 21.34 | 9.24 | 33.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.518456 | no |
| 3d_25C | 7d_25C | 0.321934 | no |
| 3d_25C | 7d_15C | 0.427906 | no |
| 3d_25C | 7d_30C | 0.340024 | no |
| 3d_25C | 10d_25C | 0.125542 | no |
| 5d_25C | 7d_25C | 0.842391 | no |
| 5d_25C | 7d_15C | 0.928910 | no |
| 5d_25C | 7d_30C | 0.857509 | no |
| 5d_25C | 10d_25C | 0.514176 | no |
| 7d_25C | 7d_15C | 0.924275 | no |
| 7d_25C | 7d_30C | 0.988456 | no |
| 7d_25C | 10d_25C | 0.702843 | no |
| 7d_15C | 7d_30C | 0.938118 | no |
| 7d_15C | 10d_25C | 0.617252 | no |
| 7d_30C | 10d_25C | 0.691533 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7373.t1 MNSIRQVQALNKRELEHAIPPEASWHADYRDTAYIYIGGLPFDLSEGDIIAIFSQYGEPVHVNLVRDKETGKSKG FAFLKYEDQRSTDLAVDNLGGATVMGRLLRVDHARYKRKDDEEEQDNVAKLMGDPGVSENKSKEDDRRRGTAIEE RRPMLKEERELEELIRNHDEEDPMKEFLIEEKKEEIATAIQLWNSTKKSSRRRDDSRERSSRHHRRHRSRSPRER RHRDDRSMDRERRSRRRSSERGEKSKKDRSPRKSRSPEPRRHRSDRDRHDRRH* |
| Coding | >Pro_DTO377G3_2|g7373.t1 ATGAATTCTATTCGCCAGGTCCAGGCGCTCAATAAGCGCGAGCTTGAGCACGCGATACCCCCAGAGGCATCATGG CATGCAGATTATCGCGACACAGCCTATATCTACATCGGAGGACTTCCATTTGATCTATCCGAAGGTGACATAATT GCGATTTTCTCACAGTATGGGGAACCGGTGCATGTCAACCTAGTCCGCGACAAGGAAACAGGCAAGAGCAAGGGA TTTGCCTTTCTGAAATATGAGGACCAGCGCAGCACAGATCTTGCTGTGGATAACCTCGGTGGCGCAACTGTCATG GGCCGTTTGCTTCGAGTGGATCATGCGCGCTACAAGCGGAAGGACGACGAGGAAGAGCAGGACAATGTCGCCAAG CTAATGGGAGATCCCGGCGTCAGTGAGAACAAGAGCAAGGAGGACGACCGGAGGAGGGGAACCGCAATAGAAGAG AGGCGACCTATGCTGAAAGAGGAAAGGGAACTGGAAGAATTGATTCGGAACCACGACGAGGAAGACCCGATGAAG GAATTCCTCATTGAGGAGAAGAAAGAAGAGATCGCCACTGCAATCCAGCTGTGGAACAGCACCAAGAAGTCGTCT CGACGACGCGATGACAGCAGAGAACGATCAAGCCGGCATCACCGCCGACACCGTTCTCGTTCTCCTCGCGAGCGA AGACATAGAGATGATCGCTCTATGGATAGGGAGCGGCGATCTCGCCGTAGGTCATCCGAAAGAGGAGAAAAATCT AAAAAGGACCGCTCGCCGAGGAAATCGCGCTCGCCCGAACCCCGAAGACACCGGAGTGATCGGGATAGACATGAT CGCCGCCATTGA |
| Transcript | >Pro_DTO377G3_2|g7373.t1 ATGAATTCTATTCGCCAGGTCCAGGCGCTCAATAAGCGCGAGCTTGAGCACGCGATACCCCCAGAGGCATCATGG CATGCAGATTATCGCGACACAGCCTATATCTACATCGGAGGACTTCCATTTGATCTATCCGAAGGTGACATAATT GCGATTTTCTCACAGTATGGGGAACCGGTGCATGTCAACCTAGTCCGCGACAAGGAAACAGGCAAGAGCAAGGGA TTTGCCTTTCTGAAATATGAGGACCAGCGCAGCACAGATCTTGCTGTGGATAACCTCGGTGGCGCAACTGTCATG GGCCGTTTGCTTCGAGTGGATCATGCGCGCTACAAGCGGAAGGACGACGAGGAAGAGCAGGACAATGTCGCCAAG CTAATGGGAGATCCCGGCGTCAGTGAGAACAAGAGCAAGGAGGACGACCGGAGGAGGGGAACCGCAATAGAAGAG AGGCGACCTATGCTGAAAGAGGAAAGGGAACTGGAAGAATTGATTCGGAACCACGACGAGGAAGACCCGATGAAG GAATTCCTCATTGAGGAGAAGAAAGAAGAGATCGCCACTGCAATCCAGCTGTGGAACAGCACCAAGAAGTCGTCT CGACGACGCGATGACAGCAGAGAACGATCAAGCCGGCATCACCGCCGACACCGTTCTCGTTCTCCTCGCGAGCGA AGACATAGAGATGATCGCTCTATGGATAGGGAGCGGCGATCTCGCCGTAGGTCATCCGAAAGAGGAGAAAAATCT AAAAAGGACCGCTCGCCGAGGAAATCGCGCTCGCCCGAACCCCGAAGACACCGGAGTGATCGGGATAGACATGAT CGCCGCCATTGA |
| Gene | >Pro_DTO377G3_2|g7373.t1 ATGAATTCTATTCGCCAGGTCCAGGCGCTCAATAAGCGCGAGCTTGAGCACGCGATGTAAGTAGAACTCATGTGA AGCTCCCGCAAAGCTCTTTTTCCCACTGACAGTCTTACGTTCCACCTATAGACCCCCAGAGGCATCATGGCATGC AGATTATCGCGACACAGCCTATATCTACATCGGAGGACTTCCATTTGATCTATCCGAAGGTGACATAATTGCGAT TTTCTCACAGTATGGGGAACCGGTGCATGTCAACCTAGTCCGCGACAAGGAAACAGGCAAGAGCAAGGGATTTGC CTTTCTGAAATATGAGGACCAGCGCAGCACAGATCTTGCTGTGGATAACCTCGGTGGCGCAACTGTCATGGGCCG TTTGCTTCGAGTGGATCATGCGCGCTACAAGCGGAAGGACGACGAGGAAGAGCAGGACAATGTCGCCAAGCTAAT GGGAGATCCCGGCGTCAGTGAGAACAAGAGCAAGGAGGACGACCGGAGGAGGGGAACCGCAATAGAAGAGAGGCG ACCTATGCTGAAAGAGGAAAGGGAACTGGAAGAATTGATTCGGAACCACGACGAGGAAGACCCGATGAAGGAATT CCTCATTGAGGAGAAGAAAGAAGAGATCGCCACTGCAATCCAGCTGTGGAACAGCACCAAGAAGTCGTCTCGACG ACGCGATGACAGCAGAGAACGATCAAGCCGGCATCACCGCCGACACCGTTCTCGTTCTCCTCGCGAGCGAAGACA TAGAGATGATCGCTCTATGGATAGGGAGCGGCGATCTCGCCGTAGGTCATCCGAAAGAGGAGAAAAATCTAAAAA GGACCGCTCGCCGAGGAAATCGCGCTCGCCCGAACCCCGAAGACACCGGAGTGATCGGGATAGACATGATCGCCG CCATTGA |