© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7371.t1 |
| Gene name | |
| Location | scaffold_22:366709..368468 |
| Strand | + |
| Gene length (bp) | 1759 |
| Transcript length (bp) | 1647 |
| Coding sequence length (bp) | 1647 |
| Protein length (aa) | 549 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF01564 | Spermine_synth | Spermine/spermidine synthase domain | 1.2E-08 | 308 | 414 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 35 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 12 | 31 | 19 |
| 2 | 46 | 63 | 17 |
| 3 | 76 | 93 | 17 |
| 4 | 103 | 125 | 22 |
| 5 | 185 | 207 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 52.41 | 31.67 | 73.16 |
| 5d_25C | Five days - 25 degrees Celsius | 48.51 | 29.05 | 67.97 |
| 7d_25C | Seven days - 25 degrees Celsius | 43.23 | 25.74 | 60.73 |
| 10d_25C | Ten days - 25 degrees Celsius | 48.63 | 29.24 | 68.01 |
| 7d_15C | Seven days - 15 degrees Celsius | 44.05 | 26.24 | 61.85 |
| 7d_30C | Seven days - 30 degrees Celsius | 60.87 | 36.93 | 84.81 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.801144 | no |
| 3d_25C | 7d_25C | 0.447180 | no |
| 3d_25C | 7d_15C | 0.499801 | no |
| 3d_25C | 7d_30C | 0.577913 | no |
| 3d_25C | 10d_25C | 0.808974 | no |
| 5d_25C | 7d_25C | 0.692133 | no |
| 5d_25C | 7d_15C | 0.754035 | no |
| 5d_25C | 7d_30C | 0.359165 | no |
| 5d_25C | 10d_25C | 0.994996 | no |
| 7d_25C | 7d_15C | 0.960904 | no |
| 7d_25C | 7d_30C | 0.129711 | no |
| 7d_25C | 10d_25C | 0.683497 | no |
| 7d_15C | 7d_30C | 0.157056 | no |
| 7d_15C | 10d_25C | 0.738815 | no |
| 7d_30C | 10d_25C | 0.362326 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7371.t1 MSPQDMLRHIDARRFTTGVVLLILLAFYSPLSKLVLSPTYGSFPAHIFHNFGVAISGGIGWLLKDKILKRMGRLG GFMLPVLAFWVPTLQYFIKQQSSKIGNPTGPVVTELCGYYPLVLLTVAYAGKQIQTALRLEAQGDVIVEHVPLIG TYIFYSAGDHIAQYVLSWIVGTSVIFTRVGMQMLLAACYSVLIPSKWLVLAIPSIIFSVTSNVHFAGISGVNSAI EHEGYSLLARQEAYTGYISVLENHNEGFRVMRCDHSLLGGQWTKLAPGYRPEVDDPIYAVFAMLEAVRLVEPDNG VSRVDADSKALVIGLGVGTTPSALIKHGIETTIVEIDPVVHKFATQYFNLPPNHISVIEDAVKFVKKAQSSPNTP QYDYIVHDVFTGGAEPADLFTYEFLSGLHSLLKEDGAIAINYAGDVALYPTGLVVRTINAVFPSCRIFREEPTGD DEDTDFTNLVLFCKKSSNTPIQFRDPVPADFLRSKSRESYLVPKHELDPAIFASWPKGGRPILIAKQAGRLHKYQ DRSAIKHWSIMRKVMPDAVWENW* |
| Coding | >Pro_DTO377G3_2|g7371.t1 ATGTCCCCCCAGGACATGTTGCGGCACATTGATGCCCGGCGGTTCACTACCGGTGTGGTTTTGCTGATCCTGCTT GCCTTCTACTCGCCCCTTTCGAAGCTTGTCTTGTCTCCAACATATGGATCCTTCCCCGCGCATATCTTCCATAAT TTTGGAGTGGCCATCTCCGGCGGAATCGGGTGGCTACTGAAGGACAAGATTCTCAAGCGCATGGGCCGTCTAGGT GGCTTTATGCTCCCTGTGTTGGCATTCTGGGTTCCGACTCTCCAGTACTTTATCAAGCAGCAAAGCTCTAAGATT GGCAACCCCACAGGCCCAGTGGTCACAGAACTTTGTGGTTACTACCCTCTGGTGCTGTTGACCGTCGCCTATGCC GGAAAGCAAATCCAGACTGCTTTGAGACTCGAAGCGCAGGGCGACGTGATAGTTGAGCATGTGCCCCTGATAGGT ACATATATATTCTATTCGGCTGGCGACCACATTGCCCAATATGTTCTTTCATGGATTGTTGGGACCTCGGTTATT TTCACCAGAGTTGGCATGCAAATGCTTCTCGCGGCCTGTTACTCTGTGCTCATCCCATCAAAATGGCTAGTCCTG GCCATTCCCTCTATCATTTTCTCAGTGACTTCGAACGTACATTTCGCTGGAATTAGTGGTGTCAATTCCGCGATT GAGCACGAAGGTTATTCTCTTTTGGCACGACAGGAAGCTTACACTGGGTACATTTCTGTTTTGGAAAACCACAAT GAAGGATTCCGAGTTATGCGCTGTGACCACAGTCTGCTTGGTGGACAGTGGACCAAGCTGGCACCAGGCTACCGA CCTGAGGTGGATGACCCTATCTACGCAGTCTTTGCCATGCTCGAGGCTGTCCGTCTGGTTGAGCCGGATAATGGC GTTTCCCGCGTTGACGCAGACAGCAAGGCGTTAGTCATCGGTCTTGGAGTCGGCACAACACCCTCTGCGCTCATC AAACACGGCATTGAAACTACCATCGTCGAAATCGACCCTGTGGTGCACAAGTTCGCCACTCAATATTTCAACCTC CCGCCAAACCACATCTCCGTGATTGAAGATGCCGTAAAATTCGTCAAGAAGGCACAGTCCTCCCCGAATACACCC CAATATGACTACATCGTCCATGATGTATTCACTGGAGGCGCCGAGCCCGCCGATCTCTTCACATACGAGTTCCTG TCAGGCCTTCACTCGCTCCTCAAGGAAGACGGTGCCATTGCCATTAACTACGCCGGTGATGTGGCCCTCTACCCA ACCGGTCTCGTCGTCCGCACCATCAATGCCGTTTTCCCATCTTGCCGCATCTTCCGCGAAGAACCCACTGGAGAT GACGAAGATACCGACTTCACCAACCTGGTCCTTTTCTGCAAGAAGAGCTCTAACACACCGATTCAATTCCGTGAC CCTGTCCCGGCTGACTTCCTGCGCAGCAAGTCTCGTGAAAGCTACCTTGTTCCCAAGCACGAACTCGACCCTGCC ATCTTTGCCTCTTGGCCCAAGGGCGGTAGACCAATTTTGATTGCTAAGCAGGCCGGAAGATTGCACAAGTACCAG GATCGCAGTGCGATCAAGCACTGGTCTATCATGCGCAAGGTTATGCCTGATGCCGTGTGGGAGAACTGGTGA |
| Transcript | >Pro_DTO377G3_2|g7371.t1 ATGTCCCCCCAGGACATGTTGCGGCACATTGATGCCCGGCGGTTCACTACCGGTGTGGTTTTGCTGATCCTGCTT GCCTTCTACTCGCCCCTTTCGAAGCTTGTCTTGTCTCCAACATATGGATCCTTCCCCGCGCATATCTTCCATAAT TTTGGAGTGGCCATCTCCGGCGGAATCGGGTGGCTACTGAAGGACAAGATTCTCAAGCGCATGGGCCGTCTAGGT GGCTTTATGCTCCCTGTGTTGGCATTCTGGGTTCCGACTCTCCAGTACTTTATCAAGCAGCAAAGCTCTAAGATT GGCAACCCCACAGGCCCAGTGGTCACAGAACTTTGTGGTTACTACCCTCTGGTGCTGTTGACCGTCGCCTATGCC GGAAAGCAAATCCAGACTGCTTTGAGACTCGAAGCGCAGGGCGACGTGATAGTTGAGCATGTGCCCCTGATAGGT ACATATATATTCTATTCGGCTGGCGACCACATTGCCCAATATGTTCTTTCATGGATTGTTGGGACCTCGGTTATT TTCACCAGAGTTGGCATGCAAATGCTTCTCGCGGCCTGTTACTCTGTGCTCATCCCATCAAAATGGCTAGTCCTG GCCATTCCCTCTATCATTTTCTCAGTGACTTCGAACGTACATTTCGCTGGAATTAGTGGTGTCAATTCCGCGATT GAGCACGAAGGTTATTCTCTTTTGGCACGACAGGAAGCTTACACTGGGTACATTTCTGTTTTGGAAAACCACAAT GAAGGATTCCGAGTTATGCGCTGTGACCACAGTCTGCTTGGTGGACAGTGGACCAAGCTGGCACCAGGCTACCGA CCTGAGGTGGATGACCCTATCTACGCAGTCTTTGCCATGCTCGAGGCTGTCCGTCTGGTTGAGCCGGATAATGGC GTTTCCCGCGTTGACGCAGACAGCAAGGCGTTAGTCATCGGTCTTGGAGTCGGCACAACACCCTCTGCGCTCATC AAACACGGCATTGAAACTACCATCGTCGAAATCGACCCTGTGGTGCACAAGTTCGCCACTCAATATTTCAACCTC CCGCCAAACCACATCTCCGTGATTGAAGATGCCGTAAAATTCGTCAAGAAGGCACAGTCCTCCCCGAATACACCC CAATATGACTACATCGTCCATGATGTATTCACTGGAGGCGCCGAGCCCGCCGATCTCTTCACATACGAGTTCCTG TCAGGCCTTCACTCGCTCCTCAAGGAAGACGGTGCCATTGCCATTAACTACGCCGGTGATGTGGCCCTCTACCCA ACCGGTCTCGTCGTCCGCACCATCAATGCCGTTTTCCCATCTTGCCGCATCTTCCGCGAAGAACCCACTGGAGAT GACGAAGATACCGACTTCACCAACCTGGTCCTTTTCTGCAAGAAGAGCTCTAACACACCGATTCAATTCCGTGAC CCTGTCCCGGCTGACTTCCTGCGCAGCAAGTCTCGTGAAAGCTACCTTGTTCCCAAGCACGAACTCGACCCTGCC ATCTTTGCCTCTTGGCCCAAGGGCGGTAGACCAATTTTGATTGCTAAGCAGGCCGGAAGATTGCACAAGTACCAG GATCGCAGTGCGATCAAGCACTGGTCTATCATGCGCAAGGTTATGCCTGATGCCGTGTGGGAGAACTGGTGA |
| Gene | >Pro_DTO377G3_2|g7371.t1 ATGTCCCCCCAGGACATGTTGCGGCACATTGATGCCCGGCGGTTCACTACCGGTGTGGTTTTGCTGATCCTGCTT GCCTTCTACTCGCCCCTTTCGAAGCTTGTCTTGTCTCCAACATATGGATCCTTCCCCGCGCATATCTTCCATAAT TTTGGAGTGGCCATCTCCGGCGGAATCGGGTGGCTACTGAAGGACAAGATTCTCAAGCGCATGGGCCGTCTAGGT GGCTTTATGCTCCCTGTGTTGGCATTCTGGGTTCCGACTCTCCAGTACTTTATCAAGCAGCAAAGCTCTAAGATT GGCAACCCCACAGGCCCAGTGGTCACAGAACTTTGTGGTTACTACCCTCTGGTGCTGTTGACCGTCGCCTATGCC GGAAAGCAAATCCAGACTGCTTTGAGACTCGAAGCGCAGGGCGACGTGATAGTTGAGCATGTGCCCCTGATAGGT ACATATATATTCTATTCGGCTGGCGACCACATTGCCCAATATGTTCTTTCATGGATTGTTGGGACCTCGGTTATT TTCACCAGAGTTGGCATGCAAATGCTTCTCGCGGCCTGTTACTCTGTGCTCATCCCATCAAAATGGCTAGTCCTG GCCATTCCCTCTATCATTTTCTCAGTGACTTCGAACGTACATTTCGCTGGAATTAGTGGTGTCAATTCCGCGATT GAGCACGAAGGTTATTCTCTTTTGGCACGACAGGAAGCTTACACTGGGTACATTTCTGTTTTGGAAAACCACAAT GAAGGATTCCGAGTTATGCGCTGTGACCACAGTCTGCTTGGTGGACAGTGGACCAAGCTGGCACCAGGCTACCGA CCTGAGGTGGATGACCCTATCTACGCAGTCTTTGCCATGCTCGAGGCTGTCCGTCTGGTTGAGCCGGATAATGGC GTTTCCCGCGTTGACGCAGACAGCAAGGCGTTAGTCATGTAAGAATTATGCAAAAAGGATCGATCGCCCAGTTTA CTGACAGAAAATAGCGGTCTTGGAGTCGGCACAACACCCTCTGCGCTCATCAAACACGGCATTGAAACTACCATC GTCGAAATCGACCCTGTGGTGCACAAGTTCGCCACTCAATATTTCAACCTCCCGCCAAACCACATCTCCGTGATT GAAGATGCCGTAAAATTCGTCAAGAAGGCACAGTCCTCCCCGAATACACCCCAATATGACTACATCGTCCATGAT GTATTCACTGGAGGCGCCGAGCCCGCCGATCTCTTCACATACGAGTTCCTGTCAGGCCTTCACTCGCTCCTCAAG GAAGACGGTGCCATTGCCATTGTGAGTTTCATCAAGGCAACAAGCCCCCCAAATCAACTCCAGACTAATGAATGG AACACAGAACTACGCCGGTGATGTGGCCCTCTACCCAACCGGTCTCGTCGTCCGCACCATCAATGCCGTTTTCCC ATCTTGCCGCATCTTCCGCGAAGAACCCACTGGAGATGACGAAGATACCGACTTCACCAACCTGGTCCTTTTCTG CAAGAAGAGCTCTAACACACCGATTCAATTCCGTGACCCTGTCCCGGCTGACTTCCTGCGCAGCAAGTCTCGTGA AAGCTACCTTGTTCCCAAGCACGAACTCGACCCTGCCATCTTTGCCTCTTGGCCCAAGGGCGGTAGACCAATTTT GATTGCTAAGCAGGCCGGAAGATTGCACAAGTACCAGGATCGCAGTGCGATCAAGCACTGGTCTATCATGCGCAA GGTTATGCCTGATGCCGTGTGGGAGAACTGGTGA |