© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7364.t1 |
| Gene name | |
| Location | scaffold_22:347260..350073 |
| Strand | + |
| Gene length (bp) | 2813 |
| Transcript length (bp) | 2709 |
| Coding sequence length (bp) | 2709 |
| Protein length (aa) | 903 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02714 | RSN1_7TM | Calcium-dependent channel, 7TM region, putative phosphate | 5.8E-92 | 410 | 681 |
| PF13967 | RSN1_TM | Late exocytosis, associated with Golgi transport | 4.2E-43 | 28 | 178 |
| PF14703 | PHM7_cyt | Cytosolic domain of 10TM putative phosphate transporter | 2.5E-33 | 201 | 397 |
| PF12621 | PHM7_ext | Extracellular tail, of 10TM putative phosphate transporter | 3.2E-31 | 802 | 894 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 27 | 49 | 22 |
| 2 | 106 | 128 | 22 |
| 3 | 154 | 176 | 22 |
| 4 | 414 | 436 | 22 |
| 5 | 460 | 482 | 22 |
| 6 | 503 | 525 | 22 |
| 7 | 553 | 575 | 22 |
| 8 | 596 | 618 | 22 |
| 9 | 623 | 645 | 22 |
| 10 | 666 | 685 | 19 |
| 11 | 690 | 712 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 71.80 | 43.92 | 99.69 |
| 5d_25C | Five days - 25 degrees Celsius | 35.29 | 20.10 | 50.48 |
| 7d_25C | Seven days - 25 degrees Celsius | 30.90 | 17.72 | 44.07 |
| 10d_25C | Ten days - 25 degrees Celsius | 22.56 | 11.76 | 33.37 |
| 7d_15C | Seven days - 15 degrees Celsius | 31.34 | 16.04 | 46.64 |
| 7d_30C | Seven days - 30 degrees Celsius | 37.95 | 20.81 | 55.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.002761 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.656348 | no |
| 5d_25C | 7d_15C | 0.719023 | no |
| 5d_25C | 7d_30C | 0.834077 | no |
| 5d_25C | 10d_25C | 0.064657 | no |
| 7d_25C | 7d_15C | 0.971576 | no |
| 7d_25C | 7d_30C | 0.465505 | no |
| 7d_25C | 10d_25C | 0.230743 | no |
| 7d_15C | 7d_30C | 0.535384 | no |
| 7d_15C | 10d_25C | 0.235261 | no |
| 7d_30C | 10d_25C | 0.030646 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7364.t1 MAHDAVHWLAARDTSDDPQDTTPTLSGLLTTLIPALVSFVVMVLLFIILRKSNRRMYMPRTYIGYLRPWQRTPDS PTGSWNWIKAMYQLPDTYVLQHHSMDAYLMLRFLKLCSVMLFVGCCITFPILWPVNATGGGGKIQLNLLSISNID ETQYGRYYAHCFLAWIYVSFIFFMITREHLFYINLRQAYLFSPANASRISSRTVLFTAVTQDLLNKEKLRTMFGR DKVKNVWIATDTKELEEKVKDRDAAAMKLEGAETKLIVLANKTRSKALKKKGSAENPETDIGDGQFDDESGSVAA RWVEAKKRPTHRLTMLIGKKVDTINWARSEIERLSPEIEELQAQHRAGETKLVSSVFVEFYHQSDAQSSFQSVAH NLPLHMSPRYIGLDPTQVIWSNLRIKWWERLGRYAATMSFVCAMIIFWAIPTAVVGAISNIDSLTKIVPFLKFID SVPSWIKGVITGLLPTVMMAVLLALVPIILRLMAKFGGAPSLPAVELTVQNWFFAFQVVQVFLVVTVASSATSVV SSIIDKPSSAASLLAQKIPTASNFYISYIILQGLSFSAGALLQIVGLILGKILGRLLDSTPRKMYTRWSSLAGLG WGTVYPAFTLLTVVAIVYSCIAPLVMGFGTIGLYLFYFAYRYNLLYVSNSTIDTQGRCYTRALQQLTVGCYLSMV CLIGLFAIGTGANTMALGPLILMIIFLIFVILFHLSMNSAMEPLLNYLPKNLEAEEEGLLAAEKANISTLNENSK TDDMSGPGGSISASRDSGVANVDNSLGSVDSAEKGLTEKSPPAPKPNFLTKFLRPDLYHNYHQLRKLVPSSSEIP TYPAEVERDAYCHPAVSSHPPLLWIPRDPLGVSAQEVAHTSRVIPITDEDAYLDENCKIQWNEEKGEPPIYEEKV TY* |
| Coding | >Pro_DTO377G3_2|g7364.t1 ATGGCCCACGATGCCGTGCACTGGCTGGCCGCCAGGGATACGAGCGACGACCCGCAGGACACCACGCCGACACTA TCTGGTCTGCTCACCACCCTAATCCCTGCTCTCGTCTCCTTCGTTGTGATGGTGTTGCTCTTCATCATCCTGCGC AAGAGCAATCGCAGGATGTACATGCCGCGAACCTACATTGGATACCTCCGTCCCTGGCAGCGCACCCCCGATTCT CCAACCGGATCCTGGAACTGGATCAAGGCGATGTACCAGTTACCCGACACCTACGTCTTGCAGCATCACTCGATG GACGCCTACCTCATGCTTCGCTTCCTCAAACTGTGCTCCGTGATGTTGTTCGTGGGCTGCTGTATCACTTTCCCG ATCTTGTGGCCCGTCAATGCCACAGGCGGTGGTGGAAAGATCCAACTGAACCTTCTGAGCATCTCAAATATCGAC GAGACTCAATACGGTCGTTACTATGCGCATTGCTTCCTCGCCTGGATCTATGTCTCCTTCATCTTCTTCATGATA ACTCGCGAGCACCTATTTTATATCAACCTCCGCCAGGCGTACCTGTTCTCACCCGCCAACGCGAGCCGCATCTCG TCTCGCACCGTTTTGTTCACAGCCGTTACCCAGGACCTCCTGAATAAGGAAAAGCTTCGCACCATGTTTGGCCGC GACAAGGTCAAGAATGTCTGGATCGCAACCGATACCAAGGAGCTCGAGGAGAAGGTCAAGGACCGCGATGCTGCT GCGATGAAGCTCGAGGGTGCGGAGACCAAGCTCATTGTGCTTGCTAATAAGACGCGCAGCAAGGCTCTTAAGAAG AAAGGCTCGGCCGAGAACCCCGAGACTGACATTGGCGATGGCCAGTTTGATGATGAGTCTGGCTCCGTCGCTGCT CGTTGGGTGGAGGCTAAGAAACGACCCACACACCGTCTCACGATGCTTATTGGCAAGAAGGTCGACACTATCAAT TGGGCGCGTTCGGAAATCGAGCGTCTCTCTCCCGAAATCGAGGAGTTGCAGGCCCAGCACCGTGCTGGAGAAACC AAGCTGGTCTCCTCCGTTTTTGTCGAGTTCTACCATCAGTCTGATGCTCAGTCTTCCTTCCAGTCTGTGGCTCAC AACCTCCCCCTGCACATGAGCCCTCGTTACATTGGTTTAGACCCTACTCAGGTCATCTGGTCCAACCTGCGCATC AAGTGGTGGGAACGCCTCGGTCGCTACGCTGCCACCATGAGCTTTGTTTGTGCTATGATCATCTTCTGGGCTATC CCTACTGCAGTTGTTGGTGCCATCTCCAACATTGACTCTTTGACCAAGATCGTTCCTTTCCTGAAGTTCATTGAC AGCGTTCCGTCATGGATTAAGGGTGTTATTACCGGTCTCTTGCCCACTGTCATGATGGCAGTCCTTCTGGCGCTG GTGCCTATCATCCTTCGCCTGATGGCTAAGTTCGGGGGTGCACCTAGTCTACCAGCTGTTGAACTGACCGTCCAA AACTGGTTCTTCGCATTTCAAGTTGTTCAGGTCTTCCTAGTGGTGACCGTTGCCTCATCGGCCACCAGTGTCGTC AGTAGTATCATTGACAAACCCTCGTCGGCCGCCTCGCTGCTAGCCCAGAAGATCCCCACCGCGTCCAACTTTTAC ATCTCATATATCATTCTACAAGGATTGTCTTTCAGCGCCGGTGCTCTACTTCAGATTGTCGGCCTGATTCTGGGC AAGATCCTCGGCAGATTACTGGATAGCACCCCTCGCAAGATGTACACGCGTTGGTCAAGCTTGGCTGGTCTCGGA TGGGGCACTGTCTACCCTGCATTCACATTGTTGACTGTTGTCGCGATCGTCTACTCTTGCATTGCACCGCTTGTC ATGGGCTTCGGTACCATTGGTCTATACCTCTTCTATTTCGCCTACCGGTACAACCTGTTGTACGTGTCGAACTCA ACCATCGACACCCAGGGTAGATGCTACACCCGTGCTCTGCAGCAGCTCACTGTCGGCTGCTACCTGTCCATGGTT TGCCTGATTGGTCTGTTCGCCATTGGCACCGGTGCCAATACGATGGCTCTCGGTCCCCTGATTCTGATGATCATC TTCTTGATCTTCGTCATTCTATTCCATCTCTCTATGAACAGCGCCATGGAGCCCCTCCTAAACTACCTTCCCAAG AACCTCGAGGCAGAGGAGGAGGGTCTGCTCGCCGCTGAGAAGGCCAACATCAGTACTCTGAACGAGAACTCCAAG ACCGATGACATGTCCGGTCCCGGTGGCTCCATCTCGGCCTCCCGTGACAGTGGCGTCGCCAACGTGGACAACAGC CTCGGCAGCGTCGACTCCGCCGAGAAGGGTCTCACCGAGAAGTCGCCGCCAGCGCCCAAGCCGAACTTTTTGACC AAGTTCCTGCGTCCGGACCTGTACCATAACTACCACCAGCTGCGCAAGTTGGTTCCCAGCTCCTCGGAAATCCCT ACTTACCCTGCTGAGGTCGAGCGTGACGCCTACTGCCACCCGGCCGTCAGCTCGCACCCCCCTCTTCTCTGGATT CCCCGCGACCCTCTCGGAGTCAGCGCCCAAGAAGTCGCTCACACTTCTCGTGTCATTCCCATCACGGACGAGGAT GCCTATCTCGATGAGAACTGCAAGATCCAATGGAACGAGGAGAAGGGAGAGCCCCCCATCTACGAGGAGAAGGTT ACCTACTAA |
| Transcript | >Pro_DTO377G3_2|g7364.t1 ATGGCCCACGATGCCGTGCACTGGCTGGCCGCCAGGGATACGAGCGACGACCCGCAGGACACCACGCCGACACTA TCTGGTCTGCTCACCACCCTAATCCCTGCTCTCGTCTCCTTCGTTGTGATGGTGTTGCTCTTCATCATCCTGCGC AAGAGCAATCGCAGGATGTACATGCCGCGAACCTACATTGGATACCTCCGTCCCTGGCAGCGCACCCCCGATTCT CCAACCGGATCCTGGAACTGGATCAAGGCGATGTACCAGTTACCCGACACCTACGTCTTGCAGCATCACTCGATG GACGCCTACCTCATGCTTCGCTTCCTCAAACTGTGCTCCGTGATGTTGTTCGTGGGCTGCTGTATCACTTTCCCG ATCTTGTGGCCCGTCAATGCCACAGGCGGTGGTGGAAAGATCCAACTGAACCTTCTGAGCATCTCAAATATCGAC GAGACTCAATACGGTCGTTACTATGCGCATTGCTTCCTCGCCTGGATCTATGTCTCCTTCATCTTCTTCATGATA ACTCGCGAGCACCTATTTTATATCAACCTCCGCCAGGCGTACCTGTTCTCACCCGCCAACGCGAGCCGCATCTCG TCTCGCACCGTTTTGTTCACAGCCGTTACCCAGGACCTCCTGAATAAGGAAAAGCTTCGCACCATGTTTGGCCGC GACAAGGTCAAGAATGTCTGGATCGCAACCGATACCAAGGAGCTCGAGGAGAAGGTCAAGGACCGCGATGCTGCT GCGATGAAGCTCGAGGGTGCGGAGACCAAGCTCATTGTGCTTGCTAATAAGACGCGCAGCAAGGCTCTTAAGAAG AAAGGCTCGGCCGAGAACCCCGAGACTGACATTGGCGATGGCCAGTTTGATGATGAGTCTGGCTCCGTCGCTGCT CGTTGGGTGGAGGCTAAGAAACGACCCACACACCGTCTCACGATGCTTATTGGCAAGAAGGTCGACACTATCAAT TGGGCGCGTTCGGAAATCGAGCGTCTCTCTCCCGAAATCGAGGAGTTGCAGGCCCAGCACCGTGCTGGAGAAACC AAGCTGGTCTCCTCCGTTTTTGTCGAGTTCTACCATCAGTCTGATGCTCAGTCTTCCTTCCAGTCTGTGGCTCAC AACCTCCCCCTGCACATGAGCCCTCGTTACATTGGTTTAGACCCTACTCAGGTCATCTGGTCCAACCTGCGCATC AAGTGGTGGGAACGCCTCGGTCGCTACGCTGCCACCATGAGCTTTGTTTGTGCTATGATCATCTTCTGGGCTATC CCTACTGCAGTTGTTGGTGCCATCTCCAACATTGACTCTTTGACCAAGATCGTTCCTTTCCTGAAGTTCATTGAC AGCGTTCCGTCATGGATTAAGGGTGTTATTACCGGTCTCTTGCCCACTGTCATGATGGCAGTCCTTCTGGCGCTG GTGCCTATCATCCTTCGCCTGATGGCTAAGTTCGGGGGTGCACCTAGTCTACCAGCTGTTGAACTGACCGTCCAA AACTGGTTCTTCGCATTTCAAGTTGTTCAGGTCTTCCTAGTGGTGACCGTTGCCTCATCGGCCACCAGTGTCGTC AGTAGTATCATTGACAAACCCTCGTCGGCCGCCTCGCTGCTAGCCCAGAAGATCCCCACCGCGTCCAACTTTTAC ATCTCATATATCATTCTACAAGGATTGTCTTTCAGCGCCGGTGCTCTACTTCAGATTGTCGGCCTGATTCTGGGC AAGATCCTCGGCAGATTACTGGATAGCACCCCTCGCAAGATGTACACGCGTTGGTCAAGCTTGGCTGGTCTCGGA TGGGGCACTGTCTACCCTGCATTCACATTGTTGACTGTTGTCGCGATCGTCTACTCTTGCATTGCACCGCTTGTC ATGGGCTTCGGTACCATTGGTCTATACCTCTTCTATTTCGCCTACCGGTACAACCTGTTGTACGTGTCGAACTCA ACCATCGACACCCAGGGTAGATGCTACACCCGTGCTCTGCAGCAGCTCACTGTCGGCTGCTACCTGTCCATGGTT TGCCTGATTGGTCTGTTCGCCATTGGCACCGGTGCCAATACGATGGCTCTCGGTCCCCTGATTCTGATGATCATC TTCTTGATCTTCGTCATTCTATTCCATCTCTCTATGAACAGCGCCATGGAGCCCCTCCTAAACTACCTTCCCAAG AACCTCGAGGCAGAGGAGGAGGGTCTGCTCGCCGCTGAGAAGGCCAACATCAGTACTCTGAACGAGAACTCCAAG ACCGATGACATGTCCGGTCCCGGTGGCTCCATCTCGGCCTCCCGTGACAGTGGCGTCGCCAACGTGGACAACAGC CTCGGCAGCGTCGACTCCGCCGAGAAGGGTCTCACCGAGAAGTCGCCGCCAGCGCCCAAGCCGAACTTTTTGACC AAGTTCCTGCGTCCGGACCTGTACCATAACTACCACCAGCTGCGCAAGTTGGTTCCCAGCTCCTCGGAAATCCCT ACTTACCCTGCTGAGGTCGAGCGTGACGCCTACTGCCACCCGGCCGTCAGCTCGCACCCCCCTCTTCTCTGGATT CCCCGCGACCCTCTCGGAGTCAGCGCCCAAGAAGTCGCTCACACTTCTCGTGTCATTCCCATCACGGACGAGGAT GCCTATCTCGATGAGAACTGCAAGATCCAATGGAACGAGGAGAAGGGAGAGCCCCCCATCTACGAGGAGAAGGTT ACCTACTAA |
| Gene | >Pro_DTO377G3_2|g7364.t1 ATGGCCCACGATGCCGTGCACTGGCTGGCCGCCAGGGATACGGTAAGCTCTGTCGAACACCTAGGTAGCCGGTCC TTTACTCACGATACTAGAGCGACGACCCGCAGGACACCACGCCGACACTATCTGGTCTGCTCACCACCCTAATCC CTGCTCTCGTCTCCTTCGTTGTGATGGTGTTGCTCTTCATCATCCTGCGCAAGAGCAATCGCAGGATGTACATGC CGCGAACCTACATTGGATACCTCCGTCCCTGGCAGCGCACCCCCGATTCTCCAACCGGATCCTGGAACTGGATCA AGGCGATGTACCAGTTACCCGACACCTACGTCTTGCAGCATCACTCGATGGACGCCTACCTCATGCTTCGCTTCC TCAAACTGTGCTCCGTGATGTTGTTCGTGGGCTGCTGTATCACTTTCCCGATCTTGTGGCCCGTCAATGCCACAG GCGGTGGTGGAAAGATCCAACTGAACCTTCTGAGCATCTCAAATATCGACGAGACTCAATACGGTCGTTACTATG CGCATTGCTTCCTCGCCTGGATCTATGTCTCCTTCATCTTCTTCATGATAACTCGCGAGCACCTATTTTATATCA ACCTCCGCCAGGCGTACCTGTTCTCACCCGCCAACGCGAGCCGCATCTCGTCTCGCACCGTTTTGTTCACAGCCG TTACCCAGGACCTCCTGAATAAGGAAAAGCTTCGCACCATGTTTGGCCGCGACAAGGTCAAGAATGTCTGGATCG CAACCGATACCAAGGAGCTCGAGGAGAAGGTCAAGGACCGCGATGCTGCTGCGATGAAGCTCGAGGGTGCGGAGA CCAAGCTCATTGTGCTTGCTAATAAGACGCGCAGCAAGGCTCTTAAGAAGAAAGGCTCGGCCGAGAACCCCGAGA CTGACATTGGCGATGGCCAGTTTGATGATGAGTCTGGCTCCGTCGCTGCTCGTTGGGTGGAGGCTAAGAAACGAC CCACACACCGTCTCACGATGCTTATTGGCAAGAAGGTCGACACTATCAATTGGGCGCGTTCGGAAATCGAGCGTC TCTCTCCCGAAATCGAGGAGTTGCAGGCCCAGCACCGTGCTGGAGAAACCAAGCTGGTCTCCTCCGTTTTTGTCG AGTTCTACCATCAGTCTGATGCTCAGTCTTCCTTCCAGTCTGTGGCTCACAACCTCCCCCTGCACATGAGCCCTC GTTACATTGGTTTAGACCCTACTCAGGTCATCTGGTCCAACCTGCGCATCAAGTGGTGGGAACGCCTCGGTCGCT ACGCTGCCACCATGAGCTTTGTTTGTGCTATGATCATCTTCTGGGCTATCCCTACTGCAGTTGTTGGTGCCATCT CCAACATTGACTCTTTGACCAAGATCGTTCCTTTCCTGAAGTTCATTGACAGCGTTCCGTCATGGATTAAGGGTG TTATTACCGGTCTCTTGCCCACTGTCATGATGGCAGTCCTTCTGGCGCTGGTGCCTATCATCCTTCGCCTGATGG CTAAGTTCGGGGGTGCACCTAGTCTACCAGCTGTTGAACTGACCGTCCAAAACTGGTTCTTCGCATTTCAAGTTG TTCAGGTCTTCCTAGTGGTGACCGTTGCCTCATCGGCCACCAGTGTCGTCAGTAGTATCATTGACAAACCCTCGT CGGCCGCCTCGCTGCTAGCCCAGAAGATCCCCACCGCGTCCAACTTTTACATCTCATATATCATTCTACAAGGAT TGTCTTTCAGCGCCGGTGCTCTACTTCAGATTGTCGGCCTGATTCTGGGCAAGATCCTCGGCAGATTACTGGATA GCACCCCTCGCAAGATGTACACGCGTTGGTCAAGCTTGGCTGGTCTCGGATGGGGCACTGTCTACCCTGCATTCA CATTGTTGACTGTTGTCGGTATGTTACACGAGTGATCGATTTATTTGTTTATGACACTAACGTTTCTCTTAGCGA TCGTCTACTCTTGCATTGCACCGCTTGTCATGGGCTTCGGTACCATTGGTCTATACCTCTTCTATTTCGCCTACC GGTACAACCTGTTGTACGTGTCGAACTCAACCATCGACACCCAGGGTAGATGCTACACCCGTGCTCTGCAGCAGC TCACTGTCGGCTGCTACCTGTCCATGGTTTGCCTGATTGGTCTGTTCGCCATTGGCACCGGTGCCAATACGATGG CTCTCGGTCCCCTGATTCTGATGATCATCTTCTTGATCTTCGTCATTCTATTCCATCTCTCTATGAACAGCGCCA TGGAGCCCCTCCTAAACTACCTTCCCAAGAACCTCGAGGCAGAGGAGGAGGGTCTGCTCGCCGCTGAGAAGGCCA ACATCAGTACTCTGAACGAGAACTCCAAGACCGATGACATGTCCGGTCCCGGTGGCTCCATCTCGGCCTCCCGTG ACAGTGGCGTCGCCAACGTGGACAACAGCCTCGGCAGCGTCGACTCCGCCGAGAAGGGTCTCACCGAGAAGTCGC CGCCAGCGCCCAAGCCGAACTTTTTGACCAAGTTCCTGCGTCCGGACCTGTACCATAACTACCACCAGCTGCGCA AGTTGGTTCCCAGCTCCTCGGAAATCCCTACTTACCCTGCTGAGGTCGAGCGTGACGCCTACTGCCACCCGGCCG TCAGCTCGCACCCCCCTCTTCTCTGGATTCCCCGCGACCCTCTCGGAGTCAGCGCCCAAGAAGTCGCTCACACTT CTCGTGTCATTCCCATCACGGACGAGGATGCCTATCTCGATGAGAACTGCAAGATCCAATGGAACGAGGAGAAGG GAGAGCCCCCCATCTACGAGGAGAAGGTTACCTACTAA |