© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7324.t1 |
| Gene name | |
| Location | scaffold_22:232608..234463 |
| Strand | + |
| Gene length (bp) | 1855 |
| Transcript length (bp) | 1782 |
| Coding sequence length (bp) | 1782 |
| Protein length (aa) | 594 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF11700 | ATG22 | Vacuole effluxer Atg22 like | 1.4E-213 | 21 | 562 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 46 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 48 | 22 |
| 2 | 109 | 131 | 22 |
| 3 | 144 | 163 | 19 |
| 4 | 167 | 189 | 22 |
| 5 | 271 | 293 | 22 |
| 6 | 303 | 322 | 19 |
| 7 | 368 | 390 | 22 |
| 8 | 400 | 422 | 22 |
| 9 | 434 | 456 | 22 |
| 10 | 469 | 491 | 22 |
| 11 | 503 | 525 | 22 |
| 12 | 535 | 553 | 18 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 110.59 | 67.59 | 153.60 |
| 5d_25C | Five days - 25 degrees Celsius | 156.34 | 93.73 | 218.96 |
| 7d_25C | Seven days - 25 degrees Celsius | 154.84 | 92.34 | 217.34 |
| 10d_25C | Ten days - 25 degrees Celsius | 206.65 | 122.08 | 291.22 |
| 7d_15C | Seven days - 15 degrees Celsius | 181.64 | 105.18 | 258.09 |
| 7d_30C | Seven days - 30 degrees Celsius | 144.68 | 86.84 | 202.52 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.121948 | no |
| 3d_25C | 7d_25C | 0.134450 | no |
| 3d_25C | 7d_15C | 0.027278 | yes |
| 3d_25C | 7d_30C | 0.248951 | no |
| 3d_25C | 10d_25C | 0.002297 | yes |
| 5d_25C | 7d_25C | 0.980631 | no |
| 5d_25C | 7d_15C | 0.591742 | no |
| 5d_25C | 7d_30C | 0.804070 | no |
| 5d_25C | 10d_25C | 0.230934 | no |
| 7d_25C | 7d_15C | 0.566980 | no |
| 7d_25C | 7d_30C | 0.832688 | no |
| 7d_25C | 10d_25C | 0.222604 | no |
| 7d_15C | 7d_30C | 0.369022 | no |
| 7d_15C | 10d_25C | 0.653539 | no |
| 7d_30C | 10d_25C | 0.107149 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7324.t1 MSIQENVESLPQYLGDDTRPTSKRELAGWYCYGWAAEVFVVCAMGSFLPITLEQMARDRGVLLSDKTTPCSATWR PSLPSPGSDAPVYLPQVSDGGQCIIYFLGAEINTASFALYTFSLSVLVQAVLIISMSGAADHGTYRKKLLIVFAL IGSIATMLFLVVVPKVYLLGGLLAIISNTCFGASFVLLNSFLPVLVRHHPSLKESEEATPSGGNVTSPRGNPLFS STGDMDRTNMDDSTPLLGPNREATKTSASTITSLELRLSTRISSNGIGIGYIGAVILQVFSILVVVVVRSPTFSL RLVLFLIGLWWFVFTIPAALWLRTRPGPPLLGSDGKPLHSWISYMAYAWKSLGKTIARARQLKDIVIFLAAWFLL SDGIATVSGTAVLFAKTQLNMKPAALGLINVIVMLAGVFGAFTWSYISNFFNLRASQTIIACIILFELIPLYGLL GFIPAVQRVGLGLHQPWEMYPLGAVYGLVMGGLSSYCRSFFGQLIPPGYEAAFYALYAITDKGSSIFGPAIVGAI TDRYGEIRPAFGFLAILIIVPLPLMLLVDVDRGQRDALALGAELDGIPQRSEYGTISDDQTTGDPIEE* |
| Coding | >Pro_DTO377G3_2|g7324.t1 ATGAGTATACAGGAGAATGTCGAGTCTCTCCCTCAATATCTTGGTGATGACACCCGGCCGACTAGCAAGAGGGAG CTTGCTGGCTGGTATTGCTATGGCTGGGCTGCCGAGGTCTTTGTAGTCTGTGCCATGGGTTCATTTCTTCCGATA ACGCTGGAGCAGATGGCTCGGGATCGGGGCGTTCTGCTGTCCGACAAAACGACACCATGCAGCGCAACCTGGAGA CCCTCGCTGCCATCACCAGGCTCGGATGCACCGGTGTATCTTCCCCAGGTGTCAGATGGCGGCCAGTGCATCATT TACTTCCTCGGCGCTGAAATCAACACGGCAAGCTTTGCCCTGTATACTTTTTCATTGAGCGTCTTAGTTCAGGCA GTCCTGATAATTTCAATGTCAGGAGCCGCTGACCATGGAACCTATCGCAAGAAACTCTTGATTGTTTTTGCTCTC ATCGGCTCAATTGCGACCATGTTGTTTTTGGTTGTGGTCCCCAAAGTTTACCTCCTAGGTGGACTGCTTGCAATC ATTTCAAATACTTGCTTTGGTGCGTCTTTTGTCCTTTTGAATTCGTTTCTACCTGTTCTGGTCCGCCACCATCCA TCGCTTAAGGAAAGTGAAGAGGCGACACCGTCAGGCGGTAATGTGACAAGCCCCAGGGGCAACCCTTTATTTTCT TCGACCGGAGATATGGACCGAACAAACATGGATGACTCTACGCCGCTACTCGGGCCTAACAGAGAAGCCACAAAG ACGTCTGCTTCCACTATCACTTCCCTAGAGCTTAGACTCTCCACCAGAATCTCGTCCAATGGCATCGGCATAGGC TATATTGGTGCAGTGATTTTACAGGTGTTTTCTATCTTAGTTGTTGTGGTCGTGCGTTCACCAACATTCTCATTA CGCCTTGTGCTCTTCTTGATTGGGCTATGGTGGTTTGTTTTTACCATCCCGGCAGCCTTGTGGCTGCGCACTCGG CCAGGCCCACCTTTGTTGGGCAGTGACGGCAAACCGCTCCATTCGTGGATCTCATACATGGCATACGCCTGGAAA TCTCTTGGAAAAACCATCGCGCGGGCGCGGCAGCTGAAAGATATCGTGATCTTCCTTGCTGCCTGGTTCCTTCTC AGTGATGGAATTGCCACTGTCAGTGGCACTGCCGTACTATTTGCGAAAACCCAACTCAACATGAAGCCTGCCGCC CTGGGACTGATCAATGTGATCGTCATGCTTGCAGGAGTATTCGGTGCATTCACCTGGAGCTACATATCGAATTTC TTCAATCTCAGAGCCTCACAAACAATTATTGCGTGTATTATCTTGTTTGAGCTCATTCCACTGTATGGTCTTCTT GGATTCATCCCGGCTGTGCAACGCGTGGGGCTTGGTCTCCACCAGCCTTGGGAAATGTATCCTTTGGGGGCCGTT TATGGCCTTGTTATGGGTGGACTGTCATCATACTGTCGAAGCTTCTTCGGGCAACTCATCCCCCCTGGTTACGAA GCGGCTTTCTACGCGCTTTATGCAATCACCGACAAAGGGTCTAGCATTTTTGGACCAGCTATTGTTGGCGCTATT ACGGATCGCTACGGTGAGATTCGACCGGCGTTTGGGTTCTTGGCGATTTTGATTATTGTGCCACTACCACTTATG CTTTTGGTGGATGTCGACCGCGGTCAACGAGATGCATTGGCGTTGGGAGCCGAATTGGATGGCATACCGCAAAGA TCTGAGTATGGGACCATATCTGACGATCAAACCACGGGGGATCCGATTGAAGAGTGA |
| Transcript | >Pro_DTO377G3_2|g7324.t1 ATGAGTATACAGGAGAATGTCGAGTCTCTCCCTCAATATCTTGGTGATGACACCCGGCCGACTAGCAAGAGGGAG CTTGCTGGCTGGTATTGCTATGGCTGGGCTGCCGAGGTCTTTGTAGTCTGTGCCATGGGTTCATTTCTTCCGATA ACGCTGGAGCAGATGGCTCGGGATCGGGGCGTTCTGCTGTCCGACAAAACGACACCATGCAGCGCAACCTGGAGA CCCTCGCTGCCATCACCAGGCTCGGATGCACCGGTGTATCTTCCCCAGGTGTCAGATGGCGGCCAGTGCATCATT TACTTCCTCGGCGCTGAAATCAACACGGCAAGCTTTGCCCTGTATACTTTTTCATTGAGCGTCTTAGTTCAGGCA GTCCTGATAATTTCAATGTCAGGAGCCGCTGACCATGGAACCTATCGCAAGAAACTCTTGATTGTTTTTGCTCTC ATCGGCTCAATTGCGACCATGTTGTTTTTGGTTGTGGTCCCCAAAGTTTACCTCCTAGGTGGACTGCTTGCAATC ATTTCAAATACTTGCTTTGGTGCGTCTTTTGTCCTTTTGAATTCGTTTCTACCTGTTCTGGTCCGCCACCATCCA TCGCTTAAGGAAAGTGAAGAGGCGACACCGTCAGGCGGTAATGTGACAAGCCCCAGGGGCAACCCTTTATTTTCT TCGACCGGAGATATGGACCGAACAAACATGGATGACTCTACGCCGCTACTCGGGCCTAACAGAGAAGCCACAAAG ACGTCTGCTTCCACTATCACTTCCCTAGAGCTTAGACTCTCCACCAGAATCTCGTCCAATGGCATCGGCATAGGC TATATTGGTGCAGTGATTTTACAGGTGTTTTCTATCTTAGTTGTTGTGGTCGTGCGTTCACCAACATTCTCATTA CGCCTTGTGCTCTTCTTGATTGGGCTATGGTGGTTTGTTTTTACCATCCCGGCAGCCTTGTGGCTGCGCACTCGG CCAGGCCCACCTTTGTTGGGCAGTGACGGCAAACCGCTCCATTCGTGGATCTCATACATGGCATACGCCTGGAAA TCTCTTGGAAAAACCATCGCGCGGGCGCGGCAGCTGAAAGATATCGTGATCTTCCTTGCTGCCTGGTTCCTTCTC AGTGATGGAATTGCCACTGTCAGTGGCACTGCCGTACTATTTGCGAAAACCCAACTCAACATGAAGCCTGCCGCC CTGGGACTGATCAATGTGATCGTCATGCTTGCAGGAGTATTCGGTGCATTCACCTGGAGCTACATATCGAATTTC TTCAATCTCAGAGCCTCACAAACAATTATTGCGTGTATTATCTTGTTTGAGCTCATTCCACTGTATGGTCTTCTT GGATTCATCCCGGCTGTGCAACGCGTGGGGCTTGGTCTCCACCAGCCTTGGGAAATGTATCCTTTGGGGGCCGTT TATGGCCTTGTTATGGGTGGACTGTCATCATACTGTCGAAGCTTCTTCGGGCAACTCATCCCCCCTGGTTACGAA GCGGCTTTCTACGCGCTTTATGCAATCACCGACAAAGGGTCTAGCATTTTTGGACCAGCTATTGTTGGCGCTATT ACGGATCGCTACGGTGAGATTCGACCGGCGTTTGGGTTCTTGGCGATTTTGATTATTGTGCCACTACCACTTATG CTTTTGGTGGATGTCGACCGCGGTCAACGAGATGCATTGGCGTTGGGAGCCGAATTGGATGGCATACCGCAAAGA TCTGAGTATGGGACCATATCTGACGATCAAACCACGGGGGATCCGATTGAAGAGTGA |
| Gene | >Pro_DTO377G3_2|g7324.t1 ATGAGTATACAGGAGAATGTCGAGTCTCTCCCTCAATATCTTGGTGATGACACCCGGCCGACTAGCAAGAGGGAG CTTGCTGGCTGGTATTGCTATGGCTGGGCTGCCGAGGTCTTTGTAGTCTGTGCCATGGGTACGTGTGATTCTACT TTCATAGATCTGTTTTTTGCATCTTCATCCTAGACTTTTTATCTGATCTGTGAAAGGTTCATTTCTTCCGATAAC GCTGGAGCAGATGGCTCGGGATCGGGGCGTTCTGCTGTCCGACAAAACGACACCATGCAGCGCAACCTGGAGACC CTCGCTGCCATCACCAGGCTCGGATGCACCGGTGTATCTTCCCCAGGTGTCAGATGGCGGCCAGTGCATCATTTA CTTCCTCGGCGCTGAAATCAACACGGCAAGCTTTGCCCTGTATACTTTTTCATTGAGCGTCTTAGTTCAGGCAGT CCTGATAATTTCAATGTCAGGAGCCGCTGACCATGGAACCTATCGCAAGAAACTCTTGATTGTTTTTGCTCTCAT CGGCTCAATTGCGACCATGTTGTTTTTGGTTGTGGTCCCCAAAGTTTACCTCCTAGGTGGACTGCTTGCAATCAT TTCAAATACTTGCTTTGGTGCGTCTTTTGTCCTTTTGAATTCGTTTCTACCTGTTCTGGTCCGCCACCATCCATC GCTTAAGGAAAGTGAAGAGGCGACACCGTCAGGCGGTAATGTGACAAGCCCCAGGGGCAACCCTTTATTTTCTTC GACCGGAGATATGGACCGAACAAACATGGATGACTCTACGCCGCTACTCGGGCCTAACAGAGAAGCCACAAAGAC GTCTGCTTCCACTATCACTTCCCTAGAGCTTAGACTCTCCACCAGAATCTCGTCCAATGGCATCGGCATAGGCTA TATTGGTGCAGTGATTTTACAGGTGTTTTCTATCTTAGTTGTTGTGGTCGTGCGTTCACCAACATTCTCATTACG CCTTGTGCTCTTCTTGATTGGGCTATGGTGGTTTGTTTTTACCATCCCGGCAGCCTTGTGGCTGCGCACTCGGCC AGGCCCACCTTTGTTGGGCAGTGACGGCAAACCGCTCCATTCGTGGATCTCATACATGGCATACGCCTGGAAATC TCTTGGAAAAACCATCGCGCGGGCGCGGCAGCTGAAAGATATCGTGATCTTCCTTGCTGCCTGGTTCCTTCTCAG TGATGGAATTGCCACTGTCAGTGGCACTGCCGTACTATTTGCGAAAACCCAACTCAACATGAAGCCTGCCGCCCT GGGACTGATCAATGTGATCGTCATGCTTGCAGGAGTATTCGGTGCATTCACCTGGAGCTACATATCGAATTTCTT CAATCTCAGAGCCTCACAAACAATTATTGCGTGTATTATCTTGTTTGAGCTCATTCCACTGTATGGTCTTCTTGG ATTCATCCCGGCTGTGCAACGCGTGGGGCTTGGTCTCCACCAGCCTTGGGAAATGTATCCTTTGGGGGCCGTTTA TGGCCTTGTTATGGGTGGACTGTCATCATACTGTCGAAGCTTCTTCGGGCAACTCATCCCCCCTGGTTACGAAGC GGCTTTCTACGCGCTTTATGCAATCACCGACAAAGGGTCTAGCATTTTTGGACCAGCTATTGTTGGCGCTATTAC GGATCGCTACGGTGAGATTCGACCGGCGTTTGGGTTCTTGGCGATTTTGATTATTGTGCCACTACCACTTATGCT TTTGGTGGATGTCGACCGCGGTCAACGAGATGCATTGGCGTTGGGAGCCGAATTGGATGGCATACCGCAAAGATC TGAGTATGGGACCATATCTGACGATCAAACCACGGGGGATCCGATTGAAGAGTGA |