© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7296.t1 |
| Gene name | |
| Location | scaffold_22:168432..168885 |
| Strand | - |
| Gene length (bp) | 453 |
| Transcript length (bp) | 453 |
| Coding sequence length (bp) | 453 |
| Protein length (aa) | 151 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 20 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 96.47 | 47.13 | 145.81 |
| 5d_25C | Five days - 25 degrees Celsius | 59.25 | 23.26 | 95.24 |
| 7d_25C | Seven days - 25 degrees Celsius | 49.32 | 18.42 | 80.22 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.37 | 7.87 | 50.87 |
| 7d_15C | Seven days - 15 degrees Celsius | 53.54 | 14.78 | 92.29 |
| 7d_30C | Seven days - 30 degrees Celsius | 69.77 | 27.83 | 111.70 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.105018 | no |
| 3d_25C | 7d_25C | 0.038966 | yes |
| 3d_25C | 7d_15C | 0.098297 | no |
| 3d_25C | 7d_30C | 0.331648 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.674232 | no |
| 5d_25C | 7d_15C | 0.842706 | no |
| 5d_25C | 7d_30C | 0.693798 | no |
| 5d_25C | 10d_25C | 0.053684 | no |
| 7d_25C | 7d_15C | 0.885880 | no |
| 7d_25C | 7d_30C | 0.354376 | no |
| 7d_25C | 10d_25C | 0.191260 | no |
| 7d_15C | 7d_30C | 0.531819 | no |
| 7d_15C | 10d_25C | 0.139728 | no |
| 7d_30C | 10d_25C | 0.013513 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7296.t1 MQFTKALLFLSALAPVAFAAESATADCITKTITLVPSGYTPPPSSTPTPTPTSTSSSVSIETPTETPIETSTEAP SSTWTPVITSIPTLSVIPSMSHIASSTPLIKATSSSPASESASATPSPLTAGAASIHLPGFIAAGAGAIAGLLLI * |
| Coding | >Pro_DTO377G3_2|g7296.t1 ATGCAGTTCACCAAGGCTCTCCTCTTCCTCTCGGCCCTCGCGCCCGTCGCGTTCGCCGCTGAATCTGCCACAGCC GACTGCATCACCAAGACCATCACTCTGGTGCCCTCTGGCTACACTCCTCCCCCGTCGTCTACCCCGACCCCCACC CCGACCTCAACTTCGAGCTCGGTTTCGATTGAAACCCCGACTGAAACCCCCATTGAGACCTCGACTGAAGCTCCC TCGTCGACCTGGACGCCTGTCATCACTAGCATTCCCACCCTCAGCGTCATCCCTTCCATGAGCCACATTGCCAGC TCCACCCCCCTGATCAAGGCTACTAGCAGCTCCCCCGCCAGTGAGAGTGCCTCGGCTACTCCTTCACCTCTTACT GCTGGTGCTGCCTCCATCCACCTCCCTGGTTTCATTGCTGCTGGTGCAGGCGCCATTGCTGGTCTTCTCTTGATC TAA |
| Transcript | >Pro_DTO377G3_2|g7296.t1 ATGCAGTTCACCAAGGCTCTCCTCTTCCTCTCGGCCCTCGCGCCCGTCGCGTTCGCCGCTGAATCTGCCACAGCC GACTGCATCACCAAGACCATCACTCTGGTGCCCTCTGGCTACACTCCTCCCCCGTCGTCTACCCCGACCCCCACC CCGACCTCAACTTCGAGCTCGGTTTCGATTGAAACCCCGACTGAAACCCCCATTGAGACCTCGACTGAAGCTCCC TCGTCGACCTGGACGCCTGTCATCACTAGCATTCCCACCCTCAGCGTCATCCCTTCCATGAGCCACATTGCCAGC TCCACCCCCCTGATCAAGGCTACTAGCAGCTCCCCCGCCAGTGAGAGTGCCTCGGCTACTCCTTCACCTCTTACT GCTGGTGCTGCCTCCATCCACCTCCCTGGTTTCATTGCTGCTGGTGCAGGCGCCATTGCTGGTCTTCTCTTGATC TAA |
| Gene | >Pro_DTO377G3_2|g7296.t1 ATGCAGTTCACCAAGGCTCTCCTCTTCCTCTCGGCCCTCGCGCCCGTCGCGTTCGCCGCTGAATCTGCCACAGCC GACTGCATCACCAAGACCATCACTCTGGTGCCCTCTGGCTACACTCCTCCCCCGTCGTCTACCCCGACCCCCACC CCGACCTCAACTTCGAGCTCGGTTTCGATTGAAACCCCGACTGAAACCCCCATTGAGACCTCGACTGAAGCTCCC TCGTCGACCTGGACGCCTGTCATCACTAGCATTCCCACCCTCAGCGTCATCCCTTCCATGAGCCACATTGCCAGC TCCACCCCCCTGATCAAGGCTACTAGCAGCTCCCCCGCCAGTGAGAGTGCCTCGGCTACTCCTTCACCTCTTACT GCTGGTGCTGCCTCCATCCACCTCCCTGGTTTCATTGCTGCTGGTGCAGGCGCCATTGCTGGTCTTCTCTTGATC TAA |