© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7293.t1 |
| Gene name | |
| Location | scaffold_22:158215..159370 |
| Strand | + |
| Gene length (bp) | 1155 |
| Transcript length (bp) | 1071 |
| Coding sequence length (bp) | 1071 |
| Protein length (aa) | 357 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF07542 | ATP12 | ATP12 chaperone protein | 1.8E-44 | 80 | 224 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0043461 | proton-transporting ATP synthase complex assembly | Yes |
| GO:0008150 | biological_process | No |
| GO:0043933 | protein-containing complex organization | No |
| GO:0009987 | cellular process | No |
| GO:0016043 | cellular component organization | No |
| GO:0065003 | protein-containing complex assembly | No |
| GO:0070071 | proton-transporting two-sector ATPase complex assembly | No |
| GO:0071840 | cellular component organization or biogenesis | No |
| GO:0022607 | cellular component assembly | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 24 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 40.81 | 22.26 | 59.36 |
| 5d_25C | Five days - 25 degrees Celsius | 45.89 | 25.59 | 66.19 |
| 7d_25C | Seven days - 25 degrees Celsius | 52.19 | 29.77 | 74.62 |
| 10d_25C | Ten days - 25 degrees Celsius | 52.00 | 29.65 | 74.36 |
| 7d_15C | Seven days - 15 degrees Celsius | 33.43 | 17.36 | 49.50 |
| 7d_30C | Seven days - 30 degrees Celsius | 36.93 | 19.64 | 54.23 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.718481 | no |
| 3d_25C | 7d_25C | 0.367186 | no |
| 3d_25C | 7d_15C | 0.505578 | no |
| 3d_25C | 7d_30C | 0.774710 | no |
| 3d_25C | 10d_25C | 0.376149 | no |
| 5d_25C | 7d_25C | 0.678884 | no |
| 5d_25C | 7d_15C | 0.228516 | no |
| 5d_25C | 7d_30C | 0.443814 | no |
| 5d_25C | 10d_25C | 0.687365 | no |
| 7d_25C | 7d_15C | 0.067447 | no |
| 7d_25C | 7d_30C | 0.172130 | no |
| 7d_25C | 10d_25C | 0.992383 | no |
| 7d_15C | 7d_30C | 0.776315 | no |
| 7d_15C | 10d_25C | 0.070700 | no |
| 7d_30C | 10d_25C | 0.176458 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7293.t1 MVAFARAALSSQLSAVARPVSLCRRIHSSHFRSAVAHPITAHGPPPKAPELKEKSKPKEAELPAPEGEGSRYNLT AALRKRFWKDVHVHGKSDEYQVLLDKRPVRTPTKEVLTIPSTKPHLAHAIALEWDVMASAQEALKSHLIPMTSLA ARATDIAREDAEGKNTTRKQILTTAMRYLDTDTLLCWEPEREMHVLERTAADGTPIESLRQIQTRIAGNVMSFLS TKVWPGLEIIPILDANSILPLAQPKGTKDSIGTWVSGLSAYDLAGLERAIIASKSLLIAVRLVVEWSENFRHLQR PETKRFGIEEAAEASSLEVTWQTNQWGEVEDTHDVGKEDLKRQLGSVVILVSGETR* |
| Coding | >Pro_DTO377G3_2|g7293.t1 ATGGTGGCTTTCGCTCGCGCTGCGCTGTCTTCGCAGCTATCCGCCGTCGCCCGTCCAGTCTCGTTATGCCGACGC ATCCACTCGTCTCACTTCAGATCAGCTGTTGCACACCCAATCACTGCTCACGGCCCTCCTCCTAAAGCCCCAGAG CTCAAGGAAAAGTCAAAACCGAAGGAGGCGGAGCTCCCAGCCCCCGAGGGTGAAGGATCGCGATACAACCTCACC GCTGCGTTGAGGAAGCGGTTTTGGAAAGATGTCCATGTGCATGGAAAGTCAGACGAATATCAAGTCCTGCTGGAC AAGCGACCCGTCCGAACCCCGACGAAAGAAGTCCTGACTATTCCCTCCACAAAGCCCCACCTCGCCCACGCTATT GCACTGGAGTGGGATGTGATGGCCTCCGCCCAGGAGGCTCTTAAAAGCCACCTCATCCCTATGACCTCCCTCGCA GCCCGCGCCACCGATATCGCCCGTGAAGATGCCGAGGGCAAAAACACCACCAGAAAACAGATTCTCACAACCGCC ATGCGTTACCTAGATACGGATACCCTACTCTGCTGGGAGCCCGAGCGAGAAATGCACGTGCTGGAGCGGACGGCG GCCGATGGAACGCCCATCGAGAGTCTTCGCCAGATTCAAACGAGAATTGCCGGCAACGTCATGAGCTTTTTGTCC ACTAAGGTCTGGCCTGGCCTTGAAATCATCCCTATCCTCGACGCCAATAGCATTCTTCCTCTCGCCCAGCCGAAG GGTACGAAAGACAGTATCGGCACTTGGGTTTCGGGACTGTCTGCGTATGATCTGGCCGGTCTGGAGCGCGCAATC ATTGCTTCCAAGAGTCTTCTCATTGCGGTGCGCCTGGTGGTGGAATGGAGTGAGAACTTCCGCCATCTTCAGCGA CCTGAGACGAAGAGGTTCGGTATCGAGGAGGCGGCTGAGGCGTCGAGTCTGGAGGTGACCTGGCAGACTAACCAA TGGGGCGAGGTAGAGGATACCCACGATGTTGGCAAGGAAGACTTGAAGCGACAGTTGGGTAGTGTTGTGATCTTG GTTAGTGGAGAGACTCGGTAA |
| Transcript | >Pro_DTO377G3_2|g7293.t1 ATGGTGGCTTTCGCTCGCGCTGCGCTGTCTTCGCAGCTATCCGCCGTCGCCCGTCCAGTCTCGTTATGCCGACGC ATCCACTCGTCTCACTTCAGATCAGCTGTTGCACACCCAATCACTGCTCACGGCCCTCCTCCTAAAGCCCCAGAG CTCAAGGAAAAGTCAAAACCGAAGGAGGCGGAGCTCCCAGCCCCCGAGGGTGAAGGATCGCGATACAACCTCACC GCTGCGTTGAGGAAGCGGTTTTGGAAAGATGTCCATGTGCATGGAAAGTCAGACGAATATCAAGTCCTGCTGGAC AAGCGACCCGTCCGAACCCCGACGAAAGAAGTCCTGACTATTCCCTCCACAAAGCCCCACCTCGCCCACGCTATT GCACTGGAGTGGGATGTGATGGCCTCCGCCCAGGAGGCTCTTAAAAGCCACCTCATCCCTATGACCTCCCTCGCA GCCCGCGCCACCGATATCGCCCGTGAAGATGCCGAGGGCAAAAACACCACCAGAAAACAGATTCTCACAACCGCC ATGCGTTACCTAGATACGGATACCCTACTCTGCTGGGAGCCCGAGCGAGAAATGCACGTGCTGGAGCGGACGGCG GCCGATGGAACGCCCATCGAGAGTCTTCGCCAGATTCAAACGAGAATTGCCGGCAACGTCATGAGCTTTTTGTCC ACTAAGGTCTGGCCTGGCCTTGAAATCATCCCTATCCTCGACGCCAATAGCATTCTTCCTCTCGCCCAGCCGAAG GGTACGAAAGACAGTATCGGCACTTGGGTTTCGGGACTGTCTGCGTATGATCTGGCCGGTCTGGAGCGCGCAATC ATTGCTTCCAAGAGTCTTCTCATTGCGGTGCGCCTGGTGGTGGAATGGAGTGAGAACTTCCGCCATCTTCAGCGA CCTGAGACGAAGAGGTTCGGTATCGAGGAGGCGGCTGAGGCGTCGAGTCTGGAGGTGACCTGGCAGACTAACCAA TGGGGCGAGGTAGAGGATACCCACGATGTTGGCAAGGAAGACTTGAAGCGACAGTTGGGTAGTGTTGTGATCTTG GTTAGTGGAGAGACTCGGTAA |
| Gene | >Pro_DTO377G3_2|g7293.t1 ATGGTGGCTTTCGCTCGCGCTGCGCTGTCTTCGCAGCTATCCGCCGTCGCCCGTCCAGTCTCGTTATGCCGACGC ATCCACTCGTCTCACTTCAGATCAGCTGTTGCACACCCAATCACTGCTCACGGCCCTCCTCCTAAAGCCCCAGAG CTCAAGGAAAAGTCAAAACCGAAGGAGGCGGAGCTCCCAGCCCCCGAGGGTGAAGGATCGCGATACAACCTCACC GCTGCGTTGAGGAAGCGGTTTTGGAAAGATGTCCATGTGCATGGAAAGTCAGGTATGAACGATAAAGGCATTGGC TGTCTTTCTCATTGATTGACCCCGTCCTTCGGTGAATACTCATCAGCTAACCCATATCTAGACGAATATCAAGTC CTGCTGGACAAGCGACCCGTCCGAACCCCGACGAAAGAAGTCCTGACTATTCCCTCCACAAAGCCCCACCTCGCC CACGCTATTGCACTGGAGTGGGATGTGATGGCCTCCGCCCAGGAGGCTCTTAAAAGCCACCTCATCCCTATGACC TCCCTCGCAGCCCGCGCCACCGATATCGCCCGTGAAGATGCCGAGGGCAAAAACACCACCAGAAAACAGATTCTC ACAACCGCCATGCGTTACCTAGATACGGATACCCTACTCTGCTGGGAGCCCGAGCGAGAAATGCACGTGCTGGAG CGGACGGCGGCCGATGGAACGCCCATCGAGAGTCTTCGCCAGATTCAAACGAGAATTGCCGGCAACGTCATGAGC TTTTTGTCCACTAAGGTCTGGCCTGGCCTTGAAATCATCCCTATCCTCGACGCCAATAGCATTCTTCCTCTCGCC CAGCCGAAGGGTACGAAAGACAGTATCGGCACTTGGGTTTCGGGACTGTCTGCGTATGATCTGGCCGGTCTGGAG CGCGCAATCATTGCTTCCAAGAGTCTTCTCATTGCGGTGCGCCTGGTGGTGGAATGGAGTGAGAACTTCCGCCAT CTTCAGCGACCTGAGACGAAGAGGTTCGGTATCGAGGAGGCGGCTGAGGCGTCGAGTCTGGAGGTGACCTGGCAG ACTAACCAATGGGGCGAGGTAGAGGATACCCACGATGTTGGCAAGGAAGACTTGAAGCGACAGTTGGGTAGTGTT GTGATCTTGGTTAGTGGAGAGACTCGGTAA |