© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7285.t1 |
| Gene name | |
| Location | scaffold_22:130538..131354 |
| Strand | - |
| Gene length (bp) | 816 |
| Transcript length (bp) | 483 |
| Coding sequence length (bp) | 483 |
| Protein length (aa) | 161 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05821 | NDUF_B8 | NADH-ubiquinone oxidoreductase ASHI subunit (CI-ASHI or NDUFB8) | 4.0E-08 | 43 | 87 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0008137 | NADH dehydrogenase (ubiquinone) activity | Yes |
| GO:0003954 | NADH dehydrogenase activity | Yes |
| GO:0005739 | mitochondrion | Yes |
| GO:0044464 | cell part | No |
| GO:0043231 | intracellular membrane-bounded organelle | No |
| GO:0050136 | NADH dehydrogenase (quinone) activity | No |
| GO:0003674 | molecular_function | No |
| GO:0043226 | organelle | No |
| GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | No |
| GO:0043227 | membrane-bounded organelle | No |
| GO:0043229 | intracellular organelle | No |
| GO:0005575 | cellular_component | No |
| GO:0016651 | oxidoreductase activity, acting on NAD(P)H | No |
| GO:0003824 | catalytic activity | No |
| GO:0016491 | oxidoreductase activity | No |
| GO:0044424 | intracellular part | No |
| GO:0044444 | cytoplasmic part | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 16 | 0.45 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 105 | 127 | 22 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7285.t1 MPEVFITMLSQRILARRLPQVAVRAIAPRASFSQVPALRAIEDDMALQNNNYPNPPPLKRAHRDPYGGWWDAQEK RNFGEPVHEDNEILGVFSPEQYNHVSAGKGFFHLGCFVAVFFSMVGVVSLTYPDKPSVPKAYVDGLEKELGGPNA VPAHKSGDKW* |
| Coding | >Pro_DTO377G3_2|g7285.t1 ATGCCTGAAGTCTTCATAACTATGTTGTCTCAACGGATCTTGGCCCGGCGCCTGCCCCAAGTTGCCGTGCGAGCT ATTGCTCCCCGCGCATCTTTCTCCCAGGTCCCAGCTCTCCGTGCTATTGAGGATGACATGGCTCTACAGAATAAC AACTACCCCAACCCTCCCCCTTTGAAGCGGGCACACAGAGACCCCTACGGTGGCTGGTGGGATGCGCAAGAGAAG CGCAACTTCGGCGAACCCGTGCACGAGGATAACGAAATCCTCGGTGTCTTCAGTCCCGAGCAATACAACCACGTC TCGGCCGGCAAGGGTTTCTTCCACCTCGGATGCTTCGTCGCTGTTTTCTTTAGCATGGTTGGTGTTGTCAGCCTT ACCTACCCTGACAAGCCGAGTGTTCCTAAGGCCTACGTCGATGGTCTGGAAAAGGAGTTGGGAGGTCCCAATGCT GTGCCTGCCCACAAGTCCGGCGATAAGTGGTGA |
| Transcript | >Pro_DTO377G3_2|g7285.t1 ATGCCTGAAGTCTTCATAACTATGTTGTCTCAACGGATCTTGGCCCGGCGCCTGCCCCAAGTTGCCGTGCGAGCT ATTGCTCCCCGCGCATCTTTCTCCCAGGTCCCAGCTCTCCGTGCTATTGAGGATGACATGGCTCTACAGAATAAC AACTACCCCAACCCTCCCCCTTTGAAGCGGGCACACAGAGACCCCTACGGTGGCTGGTGGGATGCGCAAGAGAAG CGCAACTTCGGCGAACCCGTGCACGAGGATAACGAAATCCTCGGTGTCTTCAGTCCCGAGCAATACAACCACGTC TCGGCCGGCAAGGGTTTCTTCCACCTCGGATGCTTCGTCGCTGTTTTCTTTAGCATGGTTGGTGTTGTCAGCCTT ACCTACCCTGACAAGCCGAGTGTTCCTAAGGCCTACGTCGATGGTCTGGAAAAGGAGTTGGGAGGTCCCAATGCT GTGCCTGCCCACAAGTCCGGCGATAAGTGGTGA |
| Gene | >Pro_DTO377G3_2|g7285.t1 ATGCCTGAAGTCTTGTGACTGTCTGCCTCAGGCCACAACATTCCGCAAACCTCCATCCGTTCATCATCGATATTC AACCCCCTCTACCCAATTGGCTCTCTTGCCTTCTGACAACTGATTTGCTGCTTGTCTTTCAGCATAACTGTGAGT CTCTTTCTTTAGATCCATATTATCTTCTTCAATTACGTACCAGCCTTTCTAACCTCCAATTCCTCTCTTAGATGT TGTCTCAACGGATCTTGGCCCGGCGCCTGCCCCAAGTTGCCGTGCGAGCTATTGCTCCCCGCGCATCTTTCTCCC AGGTCCCAGCTCTCCGTGCTATTGAGGATGACATGGCTCTACAGGTATAGCATCCATATGGCAGAGATGCCGTTT CCCTACTTGGCATCCGGGAACCTAACCCCCAAAACAGAATAACAACTACCCCAACCCTCCCCCTTTGAAGCGGGC ACACAGAGACCCCTACGGTGGCTGGTGGGATGCGCAAGAGAAGCGCAACTTCGGCGAACCCGTGCACGAGGATAA CGAAATCCTCGGTGTCTTCAGTCCCGAGCAATACAACCACGTCTCGGCCGGCAAGGGTTTCTTCCACCTCGGATG CTTCGTCGCTGTTTTCTTTAGCATGGTTGGTGTTGTCAGCCTTACCTACCCTGACAAGCCGAGTGTTCCTAAGGC CTACGTCGATGGTCTGGAAAAGGAGTTGGGAGGTCCCAATGCTGTGCCTGTATGTACCGGACATGATATCCCAAG AACCTTTTACATGGGCAAAGAGCTAACCAGTTGATTTAGGCCCACAAGTCCGGCGATAAGTGGTGA |