© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7272.t1 |
| Gene name | |
| Location | scaffold_22:96065..97435 |
| Strand | + |
| Gene length (bp) | 1370 |
| Transcript length (bp) | 1185 |
| Coding sequence length (bp) | 1185 |
| Protein length (aa) | 395 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 5.9E-09 | 62 | 127 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.4E-14 | 156 | 226 |
| PF00076 | RRM_1 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4.8E-16 | 285 | 348 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003723 | RNA binding | Yes |
| GO:0097159 | organic cyclic compound binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0003676 | nucleic acid binding | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 55 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 332.20 | 198.80 | 465.60 |
| 5d_25C | Five days - 25 degrees Celsius | 280.14 | 168.71 | 391.57 |
| 7d_25C | Seven days - 25 degrees Celsius | 284.58 | 170.77 | 398.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 363.11 | 215.13 | 511.10 |
| 7d_15C | Seven days - 15 degrees Celsius | 245.98 | 148.25 | 343.72 |
| 7d_30C | Seven days - 30 degrees Celsius | 260.05 | 157.02 | 363.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.517658 | no |
| 3d_25C | 7d_25C | 0.563973 | no |
| 3d_25C | 7d_15C | 0.194014 | no |
| 3d_25C | 7d_30C | 0.319590 | no |
| 3d_25C | 10d_25C | 0.769918 | no |
| 5d_25C | 7d_25C | 0.966105 | no |
| 5d_25C | 7d_15C | 0.640637 | no |
| 5d_25C | 7d_30C | 0.814062 | no |
| 5d_25C | 10d_25C | 0.275712 | no |
| 7d_25C | 7d_15C | 0.591597 | no |
| 7d_25C | 7d_30C | 0.764496 | no |
| 7d_25C | 10d_25C | 0.309493 | no |
| 7d_15C | 7d_30C | 0.863167 | no |
| 7d_15C | 10d_25C | 0.072817 | no |
| 7d_30C | 10d_25C | 0.141897 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7272.t1 MSYNGYENFPQQDPAAAGAPAPVDTNMTGQADPSAAQFQGPPPGEPNSAPVPQQGADGKTTLWMGELEPWIDENF IRNLWFQMGEQVNVKMIRDKFSGSNAGYCFVDFASPAAAAKALSLNGTPMPNTNRVFKLNWATGGGLADRSRDDR GPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQGVYCGNRP MRISTATPKNKGPGVGGNGGAAMGMPGPAGMYPPMGGPPMPFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELR SFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGPAGSPYRPAPPPPPM YPSMGMPPTHQYGGFAPMK* |
| Coding | >Pro_DTO377G3_2|g7272.t1 ATGTCTTACAACGGCTACGAAAACTTCCCTCAGCAGGATCCCGCCGCTGCTGGCGCCCCGGCTCCCGTTGACACC AACATGACCGGCCAGGCCGATCCCTCCGCCGCTCAGTTCCAGGGCCCCCCTCCTGGTGAGCCCAACTCCGCTCCC GTCCCCCAGCAGGGTGCCGATGGCAAGACCACCCTCTGGATGGGTGAGCTCGAGCCCTGGATCGACGAGAACTTC ATCCGCAACCTTTGGTTCCAGATGGGTGAGCAGGTCAACGTCAAGATGATCCGTGACAAGTTCTCTGGGAGCAAT GCCGGATACTGTTTCGTCGACTTCGCTTCCCCTGCCGCCGCTGCTAAGGCTCTTTCCCTGAACGGAACCCCCATG CCTAACACCAACCGCGTCTTCAAGCTCAACTGGGCGACCGGTGGCGGCCTTGCTGATCGCAGCCGTGATGACCGT GGCCCCGAGTACTCGATCTTCGTTGGCGACCTCGGCCCCGAGGTGAACGAATACGTCCTCGTCTCCCTCTTCCAG AGCCGCTTCCCCTCTTGCAAGTCTGCCAAGATCATGACCGACCCTATCAGCGGCATGTCCCGCGGTTACGGCTTC GTTCGCTTCTCCGATGAGAACGACCAGCAGCGTGCTCTTACCGAGATGCAGGGTGTCTACTGTGGCAACCGCCCC ATGCGTATCTCCACCGCTACCCCCAAGAACAAGGGTCCTGGTGTCGGTGGTAACGGCGGTGCCGCCATGGGTATG CCCGGTCCCGCTGGCATGTACCCTCCCATGGGTGGCCCTCCCATGCCCTTCTACGGTGCTCCCCAGCCTATGAAT CAGTTTACAGACCCCAACAACACCACCGTCTTCGTCGGTGGTCTGTCCGGCTACGTTACCGAGGATGAGCTCCGT TCTTTCTTCCAGGGCTTCGGAGAAATCACCTACGTCAAGATCCCCCCCGGAAAGGGTTGTGGTTTCGTCCAATTC GTGCAGCGCCACGCCGCTGAGATGGCTATCAACCAGATGCAGGGCTACCCCATCGGCAACTCCCGCGTGCGTCTG AGCTGGGGCCGCTCCCAGAACAACTCCGGCCCCGCCGGCAGCCCCTACCGCCCTGCTCCCCCGCCGCCTCCCATG TACCCCTCCATGGGCATGCCCCCAACCCACCAGTATGGCGGGTTTGCCCCCATGAAGTAA |
| Transcript | >Pro_DTO377G3_2|g7272.t1 ATGTCTTACAACGGCTACGAAAACTTCCCTCAGCAGGATCCCGCCGCTGCTGGCGCCCCGGCTCCCGTTGACACC AACATGACCGGCCAGGCCGATCCCTCCGCCGCTCAGTTCCAGGGCCCCCCTCCTGGTGAGCCCAACTCCGCTCCC GTCCCCCAGCAGGGTGCCGATGGCAAGACCACCCTCTGGATGGGTGAGCTCGAGCCCTGGATCGACGAGAACTTC ATCCGCAACCTTTGGTTCCAGATGGGTGAGCAGGTCAACGTCAAGATGATCCGTGACAAGTTCTCTGGGAGCAAT GCCGGATACTGTTTCGTCGACTTCGCTTCCCCTGCCGCCGCTGCTAAGGCTCTTTCCCTGAACGGAACCCCCATG CCTAACACCAACCGCGTCTTCAAGCTCAACTGGGCGACCGGTGGCGGCCTTGCTGATCGCAGCCGTGATGACCGT GGCCCCGAGTACTCGATCTTCGTTGGCGACCTCGGCCCCGAGGTGAACGAATACGTCCTCGTCTCCCTCTTCCAG AGCCGCTTCCCCTCTTGCAAGTCTGCCAAGATCATGACCGACCCTATCAGCGGCATGTCCCGCGGTTACGGCTTC GTTCGCTTCTCCGATGAGAACGACCAGCAGCGTGCTCTTACCGAGATGCAGGGTGTCTACTGTGGCAACCGCCCC ATGCGTATCTCCACCGCTACCCCCAAGAACAAGGGTCCTGGTGTCGGTGGTAACGGCGGTGCCGCCATGGGTATG CCCGGTCCCGCTGGCATGTACCCTCCCATGGGTGGCCCTCCCATGCCCTTCTACGGTGCTCCCCAGCCTATGAAT CAGTTTACAGACCCCAACAACACCACCGTCTTCGTCGGTGGTCTGTCCGGCTACGTTACCGAGGATGAGCTCCGT TCTTTCTTCCAGGGCTTCGGAGAAATCACCTACGTCAAGATCCCCCCCGGAAAGGGTTGTGGTTTCGTCCAATTC GTGCAGCGCCACGCCGCTGAGATGGCTATCAACCAGATGCAGGGCTACCCCATCGGCAACTCCCGCGTGCGTCTG AGCTGGGGCCGCTCCCAGAACAACTCCGGCCCCGCCGGCAGCCCCTACCGCCCTGCTCCCCCGCCGCCTCCCATG TACCCCTCCATGGGCATGCCCCCAACCCACCAGTATGGCGGGTTTGCCCCCATGAAGTAA |
| Gene | >Pro_DTO377G3_2|g7272.t1 ATGTCTTACAACGGCTACGAAAACTTCCCTCAGCAGGATCCCGCCGCTGCTGGCGCCCCGGCTCCCGTTGACACC AACATGACCGGCCAGGCCGATCCCTCCGCCGCTCAGTTCCAGGGCCCCCCTCCTGGTGAGCCCAACTCCGCTCCC GTCCCCCAGCAGGGTGCCGATGGCAAGACCACCCTCTGGATGGGTGAGCTCGAGCCCTGGATCGACGAGAACTTC ATCCGCAACCTTTGGTTCCAGATGGGTGAGCAGGTCAACGTCAAGATGATCCGTGACAAGTTCTCTGGGTAAGAC TGCAATTAGAACTTTCATCCCAAAATTGTTTCTAATGTGGGTAGTAGGAGCAATGCCGGATACTGTTTCGTCGAC TTCGCTTCCCCTGCCGCCGCTGCTAAGGCTCTTTCCCTGAACGGAACCCCCATGCCTAACACCAACCGCGTCTTC AAGCTCAACTGGGCGACCGGTGGCGGCCTTGCTGATCGCAGGTAAGCGATGATCTCTTTGGTTGGTTGCCTCCCG GCTCTAAAAAACTGACCCGTCCCAGCCGTGATGACCGTGGCCCCGAGTACTCGATCTTCGTTGGCGACCTCGGCC CCGAGGTGAACGAATACGTCCTCGTCTCCCTCTTCCAGAGCCGCTTCCCCTCTTGCAAGTCTGCCAAGATCATGA CCGACCCTATCAGCGGCATGTCCCGCGGTTACGGCTTCGTTCGCTTCTCCGATGAGAACGACCAGCAGCGTGCTC TTACCGAGATGCAGGGTGTCTACTGTGGCAACCGCCCCATGCGTATCTCCACCGCTACCCCCAAGAACAAGGGTC CTGGTGTCGGTGGTAACGGCGGTGCCGCCATGGGTATGCCCGGTCCCGCTGGCATGTACCCTCCCATGGGTGGCC CTCCCATGCCCTTCTACGGTGCTCCCCAGCCTATGAATCAGTTTACAGACCCCAACAACACCACCGTCTTCGTCG GTGGTCTGTCCGGCTACGTTACCGAGGATGAGCTCCGTTCTTTCTTCCAGGGCTTCGGAGAAATCACCTACGTCA AGATCCCCCCCGGAAAGGGTTGTGGTTTCGTCCAATTCGTGCAGCGCCACGCCGCTGAGATGGCTATCAACCAGA TGCAGGGCTACCCCATCGGCAACTCCCGCGTGCGTCTGAGCTGGGGCCGCTCCCAGAACAACTCCGGCCCCGCCG GCAGCCCCTACCGCCCTGCTCCCCCGCCGCCTCCCATGTACCCCTCCATGGGCATGCCCCCAACCCACCAGTATG GCGGGTTTGCCCCCATGAAGGTGAGCGATCACCCTGGCAGCCCGATCCCGGATCAAATGTGAAGCAGGCGGTCGG CTGACACACTCTTCCAGTAA |