Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7272.t1
Gene name
Locationscaffold_22:96065..97435
Strand+
Gene length (bp)1370
Transcript length (bp)1185
Coding sequence length (bp)1185
Protein length (aa) 395

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5.9E-09 62 127
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.4E-14 156 226
PF00076 RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4.8E-16 285 348

GO

GO Term Description Terminal node
GO:0003723 RNA binding Yes
GO:0097159 organic cyclic compound binding No
GO:0005488 binding No
GO:1901363 heterocyclic compound binding No
GO:0003676 nucleic acid binding No
GO:0003674 molecular_function No

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 55 0.45

Transmembrane Domains

(None)

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 332.20 198.80 465.60
5d_25C Five days - 25 degrees Celsius 280.14 168.71 391.57
7d_25C Seven days - 25 degrees Celsius 284.58 170.77 398.38
10d_25C Ten days - 25 degrees Celsius 363.11 215.13 511.10
7d_15C Seven days - 15 degrees Celsius 245.98 148.25 343.72
7d_30C Seven days - 30 degrees Celsius 260.05 157.02 363.08

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.517658 no
3d_25C 7d_25C 0.563973 no
3d_25C 7d_15C 0.194014 no
3d_25C 7d_30C 0.319590 no
3d_25C 10d_25C 0.769918 no
5d_25C 7d_25C 0.966105 no
5d_25C 7d_15C 0.640637 no
5d_25C 7d_30C 0.814062 no
5d_25C 10d_25C 0.275712 no
7d_25C 7d_15C 0.591597 no
7d_25C 7d_30C 0.764496 no
7d_25C 10d_25C 0.309493 no
7d_15C 7d_30C 0.863167 no
7d_15C 10d_25C 0.072817 no
7d_30C 10d_25C 0.141897 no

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7272.t1
MSYNGYENFPQQDPAAAGAPAPVDTNMTGQADPSAAQFQGPPPGEPNSAPVPQQGADGKTTLWMGELEPWIDENF
IRNLWFQMGEQVNVKMIRDKFSGSNAGYCFVDFASPAAAAKALSLNGTPMPNTNRVFKLNWATGGGLADRSRDDR
GPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALTEMQGVYCGNRP
MRISTATPKNKGPGVGGNGGAAMGMPGPAGMYPPMGGPPMPFYGAPQPMNQFTDPNNTTVFVGGLSGYVTEDELR
SFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMAINQMQGYPIGNSRVRLSWGRSQNNSGPAGSPYRPAPPPPPM
YPSMGMPPTHQYGGFAPMK*
Coding >Pro_DTO377G3_2|g7272.t1
ATGTCTTACAACGGCTACGAAAACTTCCCTCAGCAGGATCCCGCCGCTGCTGGCGCCCCGGCTCCCGTTGACACC
AACATGACCGGCCAGGCCGATCCCTCCGCCGCTCAGTTCCAGGGCCCCCCTCCTGGTGAGCCCAACTCCGCTCCC
GTCCCCCAGCAGGGTGCCGATGGCAAGACCACCCTCTGGATGGGTGAGCTCGAGCCCTGGATCGACGAGAACTTC
ATCCGCAACCTTTGGTTCCAGATGGGTGAGCAGGTCAACGTCAAGATGATCCGTGACAAGTTCTCTGGGAGCAAT
GCCGGATACTGTTTCGTCGACTTCGCTTCCCCTGCCGCCGCTGCTAAGGCTCTTTCCCTGAACGGAACCCCCATG
CCTAACACCAACCGCGTCTTCAAGCTCAACTGGGCGACCGGTGGCGGCCTTGCTGATCGCAGCCGTGATGACCGT
GGCCCCGAGTACTCGATCTTCGTTGGCGACCTCGGCCCCGAGGTGAACGAATACGTCCTCGTCTCCCTCTTCCAG
AGCCGCTTCCCCTCTTGCAAGTCTGCCAAGATCATGACCGACCCTATCAGCGGCATGTCCCGCGGTTACGGCTTC
GTTCGCTTCTCCGATGAGAACGACCAGCAGCGTGCTCTTACCGAGATGCAGGGTGTCTACTGTGGCAACCGCCCC
ATGCGTATCTCCACCGCTACCCCCAAGAACAAGGGTCCTGGTGTCGGTGGTAACGGCGGTGCCGCCATGGGTATG
CCCGGTCCCGCTGGCATGTACCCTCCCATGGGTGGCCCTCCCATGCCCTTCTACGGTGCTCCCCAGCCTATGAAT
CAGTTTACAGACCCCAACAACACCACCGTCTTCGTCGGTGGTCTGTCCGGCTACGTTACCGAGGATGAGCTCCGT
TCTTTCTTCCAGGGCTTCGGAGAAATCACCTACGTCAAGATCCCCCCCGGAAAGGGTTGTGGTTTCGTCCAATTC
GTGCAGCGCCACGCCGCTGAGATGGCTATCAACCAGATGCAGGGCTACCCCATCGGCAACTCCCGCGTGCGTCTG
AGCTGGGGCCGCTCCCAGAACAACTCCGGCCCCGCCGGCAGCCCCTACCGCCCTGCTCCCCCGCCGCCTCCCATG
TACCCCTCCATGGGCATGCCCCCAACCCACCAGTATGGCGGGTTTGCCCCCATGAAGTAA
Transcript >Pro_DTO377G3_2|g7272.t1
ATGTCTTACAACGGCTACGAAAACTTCCCTCAGCAGGATCCCGCCGCTGCTGGCGCCCCGGCTCCCGTTGACACC
AACATGACCGGCCAGGCCGATCCCTCCGCCGCTCAGTTCCAGGGCCCCCCTCCTGGTGAGCCCAACTCCGCTCCC
GTCCCCCAGCAGGGTGCCGATGGCAAGACCACCCTCTGGATGGGTGAGCTCGAGCCCTGGATCGACGAGAACTTC
ATCCGCAACCTTTGGTTCCAGATGGGTGAGCAGGTCAACGTCAAGATGATCCGTGACAAGTTCTCTGGGAGCAAT
GCCGGATACTGTTTCGTCGACTTCGCTTCCCCTGCCGCCGCTGCTAAGGCTCTTTCCCTGAACGGAACCCCCATG
CCTAACACCAACCGCGTCTTCAAGCTCAACTGGGCGACCGGTGGCGGCCTTGCTGATCGCAGCCGTGATGACCGT
GGCCCCGAGTACTCGATCTTCGTTGGCGACCTCGGCCCCGAGGTGAACGAATACGTCCTCGTCTCCCTCTTCCAG
AGCCGCTTCCCCTCTTGCAAGTCTGCCAAGATCATGACCGACCCTATCAGCGGCATGTCCCGCGGTTACGGCTTC
GTTCGCTTCTCCGATGAGAACGACCAGCAGCGTGCTCTTACCGAGATGCAGGGTGTCTACTGTGGCAACCGCCCC
ATGCGTATCTCCACCGCTACCCCCAAGAACAAGGGTCCTGGTGTCGGTGGTAACGGCGGTGCCGCCATGGGTATG
CCCGGTCCCGCTGGCATGTACCCTCCCATGGGTGGCCCTCCCATGCCCTTCTACGGTGCTCCCCAGCCTATGAAT
CAGTTTACAGACCCCAACAACACCACCGTCTTCGTCGGTGGTCTGTCCGGCTACGTTACCGAGGATGAGCTCCGT
TCTTTCTTCCAGGGCTTCGGAGAAATCACCTACGTCAAGATCCCCCCCGGAAAGGGTTGTGGTTTCGTCCAATTC
GTGCAGCGCCACGCCGCTGAGATGGCTATCAACCAGATGCAGGGCTACCCCATCGGCAACTCCCGCGTGCGTCTG
AGCTGGGGCCGCTCCCAGAACAACTCCGGCCCCGCCGGCAGCCCCTACCGCCCTGCTCCCCCGCCGCCTCCCATG
TACCCCTCCATGGGCATGCCCCCAACCCACCAGTATGGCGGGTTTGCCCCCATGAAGTAA
Gene >Pro_DTO377G3_2|g7272.t1
ATGTCTTACAACGGCTACGAAAACTTCCCTCAGCAGGATCCCGCCGCTGCTGGCGCCCCGGCTCCCGTTGACACC
AACATGACCGGCCAGGCCGATCCCTCCGCCGCTCAGTTCCAGGGCCCCCCTCCTGGTGAGCCCAACTCCGCTCCC
GTCCCCCAGCAGGGTGCCGATGGCAAGACCACCCTCTGGATGGGTGAGCTCGAGCCCTGGATCGACGAGAACTTC
ATCCGCAACCTTTGGTTCCAGATGGGTGAGCAGGTCAACGTCAAGATGATCCGTGACAAGTTCTCTGGGTAAGAC
TGCAATTAGAACTTTCATCCCAAAATTGTTTCTAATGTGGGTAGTAGGAGCAATGCCGGATACTGTTTCGTCGAC
TTCGCTTCCCCTGCCGCCGCTGCTAAGGCTCTTTCCCTGAACGGAACCCCCATGCCTAACACCAACCGCGTCTTC
AAGCTCAACTGGGCGACCGGTGGCGGCCTTGCTGATCGCAGGTAAGCGATGATCTCTTTGGTTGGTTGCCTCCCG
GCTCTAAAAAACTGACCCGTCCCAGCCGTGATGACCGTGGCCCCGAGTACTCGATCTTCGTTGGCGACCTCGGCC
CCGAGGTGAACGAATACGTCCTCGTCTCCCTCTTCCAGAGCCGCTTCCCCTCTTGCAAGTCTGCCAAGATCATGA
CCGACCCTATCAGCGGCATGTCCCGCGGTTACGGCTTCGTTCGCTTCTCCGATGAGAACGACCAGCAGCGTGCTC
TTACCGAGATGCAGGGTGTCTACTGTGGCAACCGCCCCATGCGTATCTCCACCGCTACCCCCAAGAACAAGGGTC
CTGGTGTCGGTGGTAACGGCGGTGCCGCCATGGGTATGCCCGGTCCCGCTGGCATGTACCCTCCCATGGGTGGCC
CTCCCATGCCCTTCTACGGTGCTCCCCAGCCTATGAATCAGTTTACAGACCCCAACAACACCACCGTCTTCGTCG
GTGGTCTGTCCGGCTACGTTACCGAGGATGAGCTCCGTTCTTTCTTCCAGGGCTTCGGAGAAATCACCTACGTCA
AGATCCCCCCCGGAAAGGGTTGTGGTTTCGTCCAATTCGTGCAGCGCCACGCCGCTGAGATGGCTATCAACCAGA
TGCAGGGCTACCCCATCGGCAACTCCCGCGTGCGTCTGAGCTGGGGCCGCTCCCAGAACAACTCCGGCCCCGCCG
GCAGCCCCTACCGCCCTGCTCCCCCGCCGCCTCCCATGTACCCCTCCATGGGCATGCCCCCAACCCACCAGTATG
GCGGGTTTGCCCCCATGAAGGTGAGCGATCACCCTGGCAGCCCGATCCCGGATCAAATGTGAAGCAGGCGGTCGG
CTGACACACTCTTCCAGTAA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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