© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7257.t1 |
| Gene name | |
| Location | scaffold_22:58285..59472 |
| Strand | + |
| Gene length (bp) | 1187 |
| Transcript length (bp) | 1071 |
| Coding sequence length (bp) | 1071 |
| Protein length (aa) | 357 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00226 | DnaJ | DnaJ domain | 4.1E-15 | 76 | 138 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 4 | 26 | 22 |
| 2 | 51 | 73 | 22 |
| 3 | 165 | 187 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 66.33 | 39.08 | 93.57 |
| 5d_25C | Five days - 25 degrees Celsius | 148.04 | 89.01 | 207.08 |
| 7d_25C | Seven days - 25 degrees Celsius | 172.86 | 103.40 | 242.32 |
| 10d_25C | Ten days - 25 degrees Celsius | 368.70 | 216.61 | 520.78 |
| 7d_15C | Seven days - 15 degrees Celsius | 54.03 | 30.83 | 77.23 |
| 7d_30C | Seven days - 30 degrees Celsius | 193.69 | 116.31 | 271.07 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.446250 | no |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.561011 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.254173 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.687813 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.003197 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 4079 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7257.t1 MSSLLPFFGWAVLPNYATSFLQSVYYGITIRAGEPKPLPQTPRFERHRRRIFIFVITSYLLYTLYETFYQVQLAG DYYQALGVSPFADERAIKTRFRRLAAQYHPDKVGLDSGSDAYFLYLRRAQETLVDPVKRFAYDRFGTDMLGWGEQ KTMRDFLMTSLVKSIIPQYVVGFITTLVLNWLWWANWGRYWRFYTFAAMLTLELGLITHPKAVFMPTSYLPVALQ AWLPRQSFYLLPFQILTLARRASIMLHIFISQAAPPTAKMAGNGNGDKISPQTVQRIGELIQLTRGTDMEATRAL QMGLAPFRGDRENVSRLRRGMKEGLILGGVRSSPEVQRAVAQVVERRKAEGDSKRD* |
| Coding | >Pro_DTO377G3_2|g7257.t1 ATGTCGTCACTTCTGCCTTTCTTCGGGTGGGCTGTTCTCCCCAATTATGCTACATCGTTTCTACAGAGTGTCTAC TATGGCATCACCATACGCGCCGGTGAACCCAAGCCACTCCCGCAAACTCCGCGGTTCGAACGTCATCGTCGCCGT ATCTTCATCTTCGTGATCACCAGCTACCTCCTCTACACGCTCTACGAGACATTCTACCAGGTGCAGCTTGCAGGT GATTACTATCAAGCCCTCGGGGTATCGCCATTTGCCGATGAACGCGCAATCAAGACCCGATTTCGCCGGCTCGCT GCTCAGTATCACCCCGATAAAGTCGGGCTGGACAGCGGGTCCGATGCTTACTTCCTGTACCTTCGACGCGCGCAG GAAACATTGGTGGACCCGGTGAAGCGATTCGCGTATGACCGGTTTGGAACAGACATGCTTGGATGGGGGGAGCAG AAGACCATGCGCGACTTCTTGATGACCTCGCTGGTCAAGTCGATCATCCCGCAATATGTCGTCGGGTTTATCACA ACGCTTGTGCTGAACTGGCTGTGGTGGGCGAATTGGGGCCGTTACTGGCGCTTCTACACGTTCGCCGCAATGCTG ACCCTCGAACTCGGCTTGATTACGCACCCCAAGGCTGTGTTCATGCCTACCTCATACCTTCCCGTCGCGCTACAA GCATGGCTCCCTAGACAATCGTTCTACCTCCTCCCCTTCCAGATCCTGACGCTAGCACGCCGCGCCTCCATCATG CTACACATTTTCATCTCGCAGGCCGCACCACCCACCGCCAAAATGGCCGGGAATGGCAACGGCGATAAGATATCA CCGCAGACTGTGCAGCGGATCGGAGAGTTGATCCAGTTGACGCGCGGCACGGATATGGAGGCGACGCGGGCGCTG CAGATGGGCCTCGCACCTTTCCGTGGTGATCGTGAAAATGTGTCGAGGCTCCGGCGGGGTATGAAGGAAGGGCTG ATCCTCGGCGGGGTGCGGTCCAGTCCTGAGGTGCAACGTGCCGTGGCACAAGTGGTTGAACGACGCAAGGCCGAG GGTGACAGTAAGCGCGATTGA |
| Transcript | >Pro_DTO377G3_2|g7257.t1 ATGTCGTCACTTCTGCCTTTCTTCGGGTGGGCTGTTCTCCCCAATTATGCTACATCGTTTCTACAGAGTGTCTAC TATGGCATCACCATACGCGCCGGTGAACCCAAGCCACTCCCGCAAACTCCGCGGTTCGAACGTCATCGTCGCCGT ATCTTCATCTTCGTGATCACCAGCTACCTCCTCTACACGCTCTACGAGACATTCTACCAGGTGCAGCTTGCAGGT GATTACTATCAAGCCCTCGGGGTATCGCCATTTGCCGATGAACGCGCAATCAAGACCCGATTTCGCCGGCTCGCT GCTCAGTATCACCCCGATAAAGTCGGGCTGGACAGCGGGTCCGATGCTTACTTCCTGTACCTTCGACGCGCGCAG GAAACATTGGTGGACCCGGTGAAGCGATTCGCGTATGACCGGTTTGGAACAGACATGCTTGGATGGGGGGAGCAG AAGACCATGCGCGACTTCTTGATGACCTCGCTGGTCAAGTCGATCATCCCGCAATATGTCGTCGGGTTTATCACA ACGCTTGTGCTGAACTGGCTGTGGTGGGCGAATTGGGGCCGTTACTGGCGCTTCTACACGTTCGCCGCAATGCTG ACCCTCGAACTCGGCTTGATTACGCACCCCAAGGCTGTGTTCATGCCTACCTCATACCTTCCCGTCGCGCTACAA GCATGGCTCCCTAGACAATCGTTCTACCTCCTCCCCTTCCAGATCCTGACGCTAGCACGCCGCGCCTCCATCATG CTACACATTTTCATCTCGCAGGCCGCACCACCCACCGCCAAAATGGCCGGGAATGGCAACGGCGATAAGATATCA CCGCAGACTGTGCAGCGGATCGGAGAGTTGATCCAGTTGACGCGCGGCACGGATATGGAGGCGACGCGGGCGCTG CAGATGGGCCTCGCACCTTTCCGTGGTGATCGTGAAAATGTGTCGAGGCTCCGGCGGGGTATGAAGGAAGGGCTG ATCCTCGGCGGGGTGCGGTCCAGTCCTGAGGTGCAACGTGCCGTGGCACAAGTGGTTGAACGACGCAAGGCCGAG GGTGACAGTAAGCGCGATTGA |
| Gene | >Pro_DTO377G3_2|g7257.t1 ATGTCGTCACTTCTGCCTTTCTTCGGGTGGGCTGTTCTCCCCAATGTGAGTGGAGCGCGATGCGGAGCTATACAA CACGTGGAATAGGAGCTAATATGAATGACAGTATGCTACATCGTTTCTACAGAGTGTCTACTATGGCATCACCAT ACGCGCCGGTGAACCCAAGCCACTCCCGCAAACTCCGCGGTTCGAACGTCATCGTCGCCGTATCTTCATCTTCGT GATCACCAGCTACCTCCTCTACACGCTCTACGAGACATTCTACCAGGTGCAGCTTGCAGGTGATTACTATCAAGC CCTCGGGGTATCGCCATTTGCCGATGAACGCGCAATCAAGACCCGATTTCGCCGGCTCGCTGCTCAGTATCACCC CGATAAAGTCGGGCTGGACAGCGGGTCCGATGCTTACTTCCTGTACCTTCGACGCGCGCAGGAAACATTGGTGGA CCCGGTGAAGCGATTCGCGTATGACCGGTTTGGAACAGACATGCTTGGATGGGGGGAGCAGAAGACCATGCGCGA CTTCTTGATGACCTCGCTGGTCAAGTCGATCATCCCGCAATATGTCGTCGGGTTTATCACAACGCTTGTGCTGAA CTGGCTGTGGTGGGCGAATTGGGGCCGTTACGTGAGTATACCATATTACCAGCAGATGTTCAATTCCATTCGCTG ACTGTTGTTAGTGGCGCTTCTACACGTTCGCCGCAATGCTGACCCTCGAACTCGGCTTGATTACGCACCCCAAGG CTGTGTTCATGCCTACCTCATACCTTCCCGTCGCGCTACAAGCATGGCTCCCTAGACAATCGTTCTACCTCCTCC CCTTCCAGATCCTGACGCTAGCACGCCGCGCCTCCATCATGCTACACATTTTCATCTCGCAGGCCGCACCACCCA CCGCCAAAATGGCCGGGAATGGCAACGGCGATAAGATATCACCGCAGACTGTGCAGCGGATCGGAGAGTTGATCC AGTTGACGCGCGGCACGGATATGGAGGCGACGCGGGCGCTGCAGATGGGCCTCGCACCTTTCCGTGGTGATCGTG AAAATGTGTCGAGGCTCCGGCGGGGTATGAAGGAAGGGCTGATCCTCGGCGGGGTGCGGTCCAGTCCTGAGGTGC AACGTGCCGTGGCACAAGTGGTTGAACGACGCAAGGCCGAGGGTGACAGTAAGCGCGATTGA |