Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7257.t1
Gene name
Locationscaffold_22:58285..59472
Strand+
Gene length (bp)1187
Transcript length (bp)1071
Coding sequence length (bp)1071
Protein length (aa) 357

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PFAM Domains

PFAM Domain ID Short name Long name E-value Start End
PF00226 DnaJ DnaJ domain 4.1E-15 76 138

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 20 0.5

Transmembrane Domains

Domain # Start End Length
1 4 26 22
2 51 73 22
3 165 187 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 66.33 39.08 93.57
5d_25C Five days - 25 degrees Celsius 148.04 89.01 207.08
7d_25C Seven days - 25 degrees Celsius 172.86 103.40 242.32
10d_25C Ten days - 25 degrees Celsius 368.70 216.61 520.78
7d_15C Seven days - 15 degrees Celsius 54.03 30.83 77.23
7d_30C Seven days - 30 degrees Celsius 193.69 116.31 271.07

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.000700 yes
3d_25C 7d_25C 0.000700 yes
3d_25C 7d_15C 0.446250 no
3d_25C 7d_30C 0.000700 yes
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.561011 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.254173 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.687813 no
7d_25C 10d_25C 0.000700 yes
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.003197 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7257.t1
MSSLLPFFGWAVLPNYATSFLQSVYYGITIRAGEPKPLPQTPRFERHRRRIFIFVITSYLLYTLYETFYQVQLAG
DYYQALGVSPFADERAIKTRFRRLAAQYHPDKVGLDSGSDAYFLYLRRAQETLVDPVKRFAYDRFGTDMLGWGEQ
KTMRDFLMTSLVKSIIPQYVVGFITTLVLNWLWWANWGRYWRFYTFAAMLTLELGLITHPKAVFMPTSYLPVALQ
AWLPRQSFYLLPFQILTLARRASIMLHIFISQAAPPTAKMAGNGNGDKISPQTVQRIGELIQLTRGTDMEATRAL
QMGLAPFRGDRENVSRLRRGMKEGLILGGVRSSPEVQRAVAQVVERRKAEGDSKRD*
Coding >Pro_DTO377G3_2|g7257.t1
ATGTCGTCACTTCTGCCTTTCTTCGGGTGGGCTGTTCTCCCCAATTATGCTACATCGTTTCTACAGAGTGTCTAC
TATGGCATCACCATACGCGCCGGTGAACCCAAGCCACTCCCGCAAACTCCGCGGTTCGAACGTCATCGTCGCCGT
ATCTTCATCTTCGTGATCACCAGCTACCTCCTCTACACGCTCTACGAGACATTCTACCAGGTGCAGCTTGCAGGT
GATTACTATCAAGCCCTCGGGGTATCGCCATTTGCCGATGAACGCGCAATCAAGACCCGATTTCGCCGGCTCGCT
GCTCAGTATCACCCCGATAAAGTCGGGCTGGACAGCGGGTCCGATGCTTACTTCCTGTACCTTCGACGCGCGCAG
GAAACATTGGTGGACCCGGTGAAGCGATTCGCGTATGACCGGTTTGGAACAGACATGCTTGGATGGGGGGAGCAG
AAGACCATGCGCGACTTCTTGATGACCTCGCTGGTCAAGTCGATCATCCCGCAATATGTCGTCGGGTTTATCACA
ACGCTTGTGCTGAACTGGCTGTGGTGGGCGAATTGGGGCCGTTACTGGCGCTTCTACACGTTCGCCGCAATGCTG
ACCCTCGAACTCGGCTTGATTACGCACCCCAAGGCTGTGTTCATGCCTACCTCATACCTTCCCGTCGCGCTACAA
GCATGGCTCCCTAGACAATCGTTCTACCTCCTCCCCTTCCAGATCCTGACGCTAGCACGCCGCGCCTCCATCATG
CTACACATTTTCATCTCGCAGGCCGCACCACCCACCGCCAAAATGGCCGGGAATGGCAACGGCGATAAGATATCA
CCGCAGACTGTGCAGCGGATCGGAGAGTTGATCCAGTTGACGCGCGGCACGGATATGGAGGCGACGCGGGCGCTG
CAGATGGGCCTCGCACCTTTCCGTGGTGATCGTGAAAATGTGTCGAGGCTCCGGCGGGGTATGAAGGAAGGGCTG
ATCCTCGGCGGGGTGCGGTCCAGTCCTGAGGTGCAACGTGCCGTGGCACAAGTGGTTGAACGACGCAAGGCCGAG
GGTGACAGTAAGCGCGATTGA
Transcript >Pro_DTO377G3_2|g7257.t1
ATGTCGTCACTTCTGCCTTTCTTCGGGTGGGCTGTTCTCCCCAATTATGCTACATCGTTTCTACAGAGTGTCTAC
TATGGCATCACCATACGCGCCGGTGAACCCAAGCCACTCCCGCAAACTCCGCGGTTCGAACGTCATCGTCGCCGT
ATCTTCATCTTCGTGATCACCAGCTACCTCCTCTACACGCTCTACGAGACATTCTACCAGGTGCAGCTTGCAGGT
GATTACTATCAAGCCCTCGGGGTATCGCCATTTGCCGATGAACGCGCAATCAAGACCCGATTTCGCCGGCTCGCT
GCTCAGTATCACCCCGATAAAGTCGGGCTGGACAGCGGGTCCGATGCTTACTTCCTGTACCTTCGACGCGCGCAG
GAAACATTGGTGGACCCGGTGAAGCGATTCGCGTATGACCGGTTTGGAACAGACATGCTTGGATGGGGGGAGCAG
AAGACCATGCGCGACTTCTTGATGACCTCGCTGGTCAAGTCGATCATCCCGCAATATGTCGTCGGGTTTATCACA
ACGCTTGTGCTGAACTGGCTGTGGTGGGCGAATTGGGGCCGTTACTGGCGCTTCTACACGTTCGCCGCAATGCTG
ACCCTCGAACTCGGCTTGATTACGCACCCCAAGGCTGTGTTCATGCCTACCTCATACCTTCCCGTCGCGCTACAA
GCATGGCTCCCTAGACAATCGTTCTACCTCCTCCCCTTCCAGATCCTGACGCTAGCACGCCGCGCCTCCATCATG
CTACACATTTTCATCTCGCAGGCCGCACCACCCACCGCCAAAATGGCCGGGAATGGCAACGGCGATAAGATATCA
CCGCAGACTGTGCAGCGGATCGGAGAGTTGATCCAGTTGACGCGCGGCACGGATATGGAGGCGACGCGGGCGCTG
CAGATGGGCCTCGCACCTTTCCGTGGTGATCGTGAAAATGTGTCGAGGCTCCGGCGGGGTATGAAGGAAGGGCTG
ATCCTCGGCGGGGTGCGGTCCAGTCCTGAGGTGCAACGTGCCGTGGCACAAGTGGTTGAACGACGCAAGGCCGAG
GGTGACAGTAAGCGCGATTGA
Gene >Pro_DTO377G3_2|g7257.t1
ATGTCGTCACTTCTGCCTTTCTTCGGGTGGGCTGTTCTCCCCAATGTGAGTGGAGCGCGATGCGGAGCTATACAA
CACGTGGAATAGGAGCTAATATGAATGACAGTATGCTACATCGTTTCTACAGAGTGTCTACTATGGCATCACCAT
ACGCGCCGGTGAACCCAAGCCACTCCCGCAAACTCCGCGGTTCGAACGTCATCGTCGCCGTATCTTCATCTTCGT
GATCACCAGCTACCTCCTCTACACGCTCTACGAGACATTCTACCAGGTGCAGCTTGCAGGTGATTACTATCAAGC
CCTCGGGGTATCGCCATTTGCCGATGAACGCGCAATCAAGACCCGATTTCGCCGGCTCGCTGCTCAGTATCACCC
CGATAAAGTCGGGCTGGACAGCGGGTCCGATGCTTACTTCCTGTACCTTCGACGCGCGCAGGAAACATTGGTGGA
CCCGGTGAAGCGATTCGCGTATGACCGGTTTGGAACAGACATGCTTGGATGGGGGGAGCAGAAGACCATGCGCGA
CTTCTTGATGACCTCGCTGGTCAAGTCGATCATCCCGCAATATGTCGTCGGGTTTATCACAACGCTTGTGCTGAA
CTGGCTGTGGTGGGCGAATTGGGGCCGTTACGTGAGTATACCATATTACCAGCAGATGTTCAATTCCATTCGCTG
ACTGTTGTTAGTGGCGCTTCTACACGTTCGCCGCAATGCTGACCCTCGAACTCGGCTTGATTACGCACCCCAAGG
CTGTGTTCATGCCTACCTCATACCTTCCCGTCGCGCTACAAGCATGGCTCCCTAGACAATCGTTCTACCTCCTCC
CCTTCCAGATCCTGACGCTAGCACGCCGCGCCTCCATCATGCTACACATTTTCATCTCGCAGGCCGCACCACCCA
CCGCCAAAATGGCCGGGAATGGCAACGGCGATAAGATATCACCGCAGACTGTGCAGCGGATCGGAGAGTTGATCC
AGTTGACGCGCGGCACGGATATGGAGGCGACGCGGGCGCTGCAGATGGGCCTCGCACCTTTCCGTGGTGATCGTG
AAAATGTGTCGAGGCTCCGGCGGGGTATGAAGGAAGGGCTGATCCTCGGCGGGGTGCGGTCCAGTCCTGAGGTGC
AACGTGCCGTGGCACAAGTGGTTGAACGACGCAAGGCCGAGGGTGACAGTAAGCGCGATTGA

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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