© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7245.t1 |
| Gene name | |
| Location | scaffold_22:33405..34555 |
| Strand | - |
| Gene length (bp) | 1150 |
| Transcript length (bp) | 1101 |
| Coding sequence length (bp) | 1101 |
| Protein length (aa) | 367 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF05637 | Glyco_transf_34 | galactosyl transferase GMA12/MNN10 family | 2.0E-05 | 159 | 264 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016757 | glycosyltransferase activity | Yes |
| GO:0016021 | integral component of membrane | Yes |
| GO:0005575 | cellular_component | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0016740 | transferase activity | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0031224 | intrinsic component of membrane | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 26 | 43 | 17 |
| CAZyme category | E-value | Start | End |
|---|---|---|---|
| GT34 | 1.6E-29 | 76 | 269 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 502.20 | 290.68 | 713.72 |
| 5d_25C | Five days - 25 degrees Celsius | 196.09 | 115.92 | 276.26 |
| 7d_25C | Seven days - 25 degrees Celsius | 238.22 | 130.66 | 345.79 |
| 10d_25C | Ten days - 25 degrees Celsius | 52.21 | 23.47 | 80.94 |
| 7d_15C | Seven days - 15 degrees Celsius | 204.46 | 107.88 | 301.05 |
| 7d_30C | Seven days - 30 degrees Celsius | 32.31 | 16.87 | 47.75 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.491063 | no |
| 5d_25C | 7d_15C | 0.911263 | no |
| 5d_25C | 7d_30C | 0.000700 | yes |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.629604 | no |
| 7d_25C | 7d_30C | 0.000700 | yes |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.101429 | no |
| Orthofinder run ID | 2 |
| Orthogroup | 4066 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7245.t1 MRNKPSTYAVMTAMIPHQLAFKQRPLHIVLIILSVTCVVWVTANSVNSFSILESENAPSNKLQRVAKVSMLYGET NHMYERALQSHERHGKQWGYPMHILRQDISIGFWNKPSYLLSLVVNELTKPAGERMEWLMWVDADSIILNNDIPV EIFLPPSDLKDIHLVASQDQNGLNTGIMFLHVHPWMISFLTETLGYPLYLPQIDLGRSADQESMRRVLNKTTGGP SGQGYADGVSYLPRPWINTYEWDWAYEGKRGDLLVHFPGLEERRWPHMAKWLDVVEMTPEKWNLPLEETGYLNKT SVYWSQIRSAKESIKSAEKKLQSEEVVPGNTKEAAGALKKALREKSDNMELVQQLLQDLNGLIGMT* |
| Coding | >Pro_DTO377G3_2|g7245.t1 ATGAGGAACAAGCCTAGCACCTACGCGGTGATGACGGCTATGATTCCACACCAACTGGCATTCAAACAACGACCC TTGCACATCGTCCTGATAATTCTATCAGTAACATGTGTTGTTTGGGTCACAGCCAATTCAGTCAATTCCTTTTCT ATTCTCGAGTCGGAAAATGCTCCCAGTAACAAGTTGCAAAGGGTCGCCAAAGTGTCCATGCTATACGGAGAGACG AACCATATGTACGAAAGAGCGCTACAAAGCCATGAACGCCATGGGAAGCAATGGGGATACCCCATGCATATCCTG CGGCAGGATATCTCGATCGGATTTTGGAACAAACCGAGCTATCTGCTATCCTTGGTTGTCAATGAATTGACCAAG CCAGCCGGCGAGAGAATGGAGTGGTTGATGTGGGTAGACGCAGACTCGATTATACTGAACAATGACATCCCCGTG GAAATCTTCCTCCCGCCGTCCGACCTGAAAGATATCCACCTAGTGGCAAGCCAGGACCAAAACGGCCTCAACACG GGGATTATGTTCCTCCACGTCCATCCCTGGATGATCAGTTTCCTTACCGAAACATTGGGCTACCCTCTTTATCTC CCTCAGATTGACCTTGGTCGATCTGCTGACCAAGAAAGCATGAGACGTGTGCTCAACAAAACGACGGGGGGTCCA AGTGGACAGGGTTACGCAGATGGAGTCTCCTATCTGCCACGACCGTGGATCAATACCTATGAATGGGACTGGGCC TATGAAGGCAAAAGAGGGGATCTGCTCGTGCACTTCCCGGGTCTGGAGGAGCGCCGATGGCCGCACATGGCCAAA TGGTTGGATGTTGTCGAAATGACTCCTGAAAAGTGGAACTTGCCTCTTGAGGAGACTGGATATCTCAACAAGACC TCAGTGTATTGGTCTCAGATTCGAAGTGCGAAGGAAAGTATCAAGTCTGCAGAGAAGAAACTGCAGTCTGAGGAG GTAGTGCCTGGAAATACCAAGGAGGCAGCCGGTGCACTCAAGAAGGCATTGCGTGAGAAATCAGATAATATGGAG CTGGTACAACAGCTGCTCCAGGATCTTAATGGCTTGATCGGGATGACATAA |
| Transcript | >Pro_DTO377G3_2|g7245.t1 ATGAGGAACAAGCCTAGCACCTACGCGGTGATGACGGCTATGATTCCACACCAACTGGCATTCAAACAACGACCC TTGCACATCGTCCTGATAATTCTATCAGTAACATGTGTTGTTTGGGTCACAGCCAATTCAGTCAATTCCTTTTCT ATTCTCGAGTCGGAAAATGCTCCCAGTAACAAGTTGCAAAGGGTCGCCAAAGTGTCCATGCTATACGGAGAGACG AACCATATGTACGAAAGAGCGCTACAAAGCCATGAACGCCATGGGAAGCAATGGGGATACCCCATGCATATCCTG CGGCAGGATATCTCGATCGGATTTTGGAACAAACCGAGCTATCTGCTATCCTTGGTTGTCAATGAATTGACCAAG CCAGCCGGCGAGAGAATGGAGTGGTTGATGTGGGTAGACGCAGACTCGATTATACTGAACAATGACATCCCCGTG GAAATCTTCCTCCCGCCGTCCGACCTGAAAGATATCCACCTAGTGGCAAGCCAGGACCAAAACGGCCTCAACACG GGGATTATGTTCCTCCACGTCCATCCCTGGATGATCAGTTTCCTTACCGAAACATTGGGCTACCCTCTTTATCTC CCTCAGATTGACCTTGGTCGATCTGCTGACCAAGAAAGCATGAGACGTGTGCTCAACAAAACGACGGGGGGTCCA AGTGGACAGGGTTACGCAGATGGAGTCTCCTATCTGCCACGACCGTGGATCAATACCTATGAATGGGACTGGGCC TATGAAGGCAAAAGAGGGGATCTGCTCGTGCACTTCCCGGGTCTGGAGGAGCGCCGATGGCCGCACATGGCCAAA TGGTTGGATGTTGTCGAAATGACTCCTGAAAAGTGGAACTTGCCTCTTGAGGAGACTGGATATCTCAACAAGACC TCAGTGTATTGGTCTCAGATTCGAAGTGCGAAGGAAAGTATCAAGTCTGCAGAGAAGAAACTGCAGTCTGAGGAG GTAGTGCCTGGAAATACCAAGGAGGCAGCCGGTGCACTCAAGAAGGCATTGCGTGAGAAATCAGATAATATGGAG CTGGTACAACAGCTGCTCCAGGATCTTAATGGCTTGATCGGGATGACATAA |
| Gene | >Pro_DTO377G3_2|g7245.t1 ATGAGGAACAAGCCTAGCACCTACGCGGTGATGACGGCTATGATTCCACACCAACTGGCATTCAAACAACGACCC TTGCACATCGTCCTGATAATTCTATCAGTAACATGTGTTGTTTGGGTCACAGCCAATTCAGTCAATTCCTTTTCT ATTCTCGAGTCGGAAAATGCTCCCAGTAACAAGTTGCAAAGGGTCGCCAAAGTGTCCATGCTATACGGAGAGACG AACCATATGTACGAAAGAGCGCTACAAAGCCATGAACGCCATGGGAAGCAATGGGGATACCCCATGCATATCCTG CGGCAGGATATCTCGATCGGATTTTGGAACAAACCGAGCTATCTGCTATCCTTGGTTGTCAATGAATTGACCAAG CCAGCCGGCGAGAGAATGGAGTGGTTGATGTATGTCCTTTCTTTCTTTGTATATGCTTGAGAATGCTAATTCGCG CAGGTGGGTAGACGCAGACTCGATTATACTGAACAATGACATCCCCGTGGAAATCTTCCTCCCGCCGTCCGACCT GAAAGATATCCACCTAGTGGCAAGCCAGGACCAAAACGGCCTCAACACGGGGATTATGTTCCTCCACGTCCATCC CTGGATGATCAGTTTCCTTACCGAAACATTGGGCTACCCTCTTTATCTCCCTCAGATTGACCTTGGTCGATCTGC TGACCAAGAAAGCATGAGACGTGTGCTCAACAAAACGACGGGGGGTCCAAGTGGACAGGGTTACGCAGATGGAGT CTCCTATCTGCCACGACCGTGGATCAATACCTATGAATGGGACTGGGCCTATGAAGGCAAAAGAGGGGATCTGCT CGTGCACTTCCCGGGTCTGGAGGAGCGCCGATGGCCGCACATGGCCAAATGGTTGGATGTTGTCGAAATGACTCC TGAAAAGTGGAACTTGCCTCTTGAGGAGACTGGATATCTCAACAAGACCTCAGTGTATTGGTCTCAGATTCGAAG TGCGAAGGAAAGTATCAAGTCTGCAGAGAAGAAACTGCAGTCTGAGGAGGTAGTGCCTGGAAATACCAAGGAGGC AGCCGGTGCACTCAAGAAGGCATTGCGTGAGAAATCAGATAATATGGAGCTGGTACAACAGCTGCTCCAGGATCT TAATGGCTTGATCGGGATGACATAA |