© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7244.t1 |
| Gene name | |
| Location | scaffold_22:30779..31841 |
| Strand | - |
| Gene length (bp) | 1062 |
| Transcript length (bp) | 912 |
| Coding sequence length (bp) | 912 |
| Protein length (aa) | 304 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 13 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 17 | 39 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 19.98 | 8.64 | 31.33 |
| 5d_25C | Five days - 25 degrees Celsius | 18.96 | 7.93 | 29.98 |
| 7d_25C | Seven days - 25 degrees Celsius | 18.61 | 7.83 | 29.38 |
| 10d_25C | Ten days - 25 degrees Celsius | 18.72 | 7.94 | 29.50 |
| 7d_15C | Seven days - 15 degrees Celsius | 37.08 | 18.43 | 55.74 |
| 7d_30C | Seven days - 30 degrees Celsius | 15.10 | 5.97 | 24.24 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.914818 | no |
| 3d_25C | 7d_25C | 0.880779 | no |
| 3d_25C | 7d_15C | 0.027043 | yes |
| 3d_25C | 7d_30C | 0.455679 | no |
| 3d_25C | 10d_25C | 0.892188 | no |
| 5d_25C | 7d_25C | 0.971202 | no |
| 5d_25C | 7d_15C | 0.018838 | yes |
| 5d_25C | 7d_30C | 0.576305 | no |
| 5d_25C | 10d_25C | 0.981761 | no |
| 7d_25C | 7d_15C | 0.014096 | yes |
| 7d_25C | 7d_30C | 0.614556 | no |
| 7d_25C | 10d_25C | 0.991911 | no |
| 7d_15C | 7d_30C | 0.002761 | yes |
| 7d_15C | 10d_25C | 0.018560 | yes |
| 7d_30C | 10d_25C | 0.601837 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7244.t1 MPRPRSGLMFPRRITAIFTSSLIVCALLLVYSYLNSVLIDQPSQKHFLWTVESHLYSSTVRKLYNPYIHPITRTI FIGRTGKAFWVAEPLRFTEPLGKKILILDADSRDLDGPQGLLSKVPLNATGLPPDVSGRLNHYMFAMIHGYDYRL VQIPRAVGRSGTWIKVTAIKEALEHYEYVVFMDSDAMMPYPNLPMEWLFNYWEITPETLVAMALDPEAPHNLDWN GRTFLNTGFIIAQQSPRTHELFEAWDDCPTETRYPDCAKWGREWPHEQSAFGNHVRGKWVPRGRSYGMCRGVGEA LLG* |
| Coding | >Pro_DTO377G3_2|g7244.t1 ATGCCTCGTCCAAGGTCAGGACTCATGTTTCCTCGCCGAATAACCGCTATTTTTACTTCGAGTCTGATCGTGTGT GCGCTGCTTTTGGTATACTCCTACTTGAACAGTGTATTAATCGATCAGCCGTCCCAGAAGCACTTCCTATGGACC GTCGAAAGCCACTTATACTCCTCCACGGTCCGCAAACTATACAATCCCTACATACACCCCATTACTAGAACCATA TTTATTGGCCGCACAGGGAAAGCCTTCTGGGTTGCGGAGCCATTAAGGTTCACCGAACCATTAGGAAAGAAGATC CTCATTTTGGACGCCGATAGTCGGGATCTTGATGGCCCTCAAGGTCTTTTGAGCAAGGTTCCATTGAACGCGACT GGACTTCCTCCGGATGTCAGTGGAAGACTCAACCATTACATGTTCGCAATGATCCATGGCTACGATTACCGACTA GTTCAGATCCCCAGAGCAGTCGGGCGAAGTGGAACATGGATCAAAGTCACCGCCATCAAAGAAGCGTTGGAACAC TACGAATACGTTGTATTCATGGATTCAGACGCCATGATGCCGTACCCCAATCTACCCATGGAATGGCTATTCAAC TACTGGGAGATCACTCCGGAGACTCTGGTTGCCATGGCGCTCGATCCAGAAGCACCTCACAACCTTGATTGGAAC GGCCGGACATTTCTCAACACTGGATTTATTATTGCCCAGCAAAGCCCTCGCACCCATGAACTCTTTGAGGCGTGG GACGATTGTCCCACTGAAACGCGCTATCCAGACTGCGCTAAATGGGGCCGAGAATGGCCACATGAGCAATCTGCA TTTGGGAACCACGTCAGAGGCAAATGGGTGCCCAGGGGTCGCAGCTACGGGATGTGTCGGGGAGTTGGTGAGGCA CTATTGGGGTGA |
| Transcript | >Pro_DTO377G3_2|g7244.t1 ATGCCTCGTCCAAGGTCAGGACTCATGTTTCCTCGCCGAATAACCGCTATTTTTACTTCGAGTCTGATCGTGTGT GCGCTGCTTTTGGTATACTCCTACTTGAACAGTGTATTAATCGATCAGCCGTCCCAGAAGCACTTCCTATGGACC GTCGAAAGCCACTTATACTCCTCCACGGTCCGCAAACTATACAATCCCTACATACACCCCATTACTAGAACCATA TTTATTGGCCGCACAGGGAAAGCCTTCTGGGTTGCGGAGCCATTAAGGTTCACCGAACCATTAGGAAAGAAGATC CTCATTTTGGACGCCGATAGTCGGGATCTTGATGGCCCTCAAGGTCTTTTGAGCAAGGTTCCATTGAACGCGACT GGACTTCCTCCGGATGTCAGTGGAAGACTCAACCATTACATGTTCGCAATGATCCATGGCTACGATTACCGACTA GTTCAGATCCCCAGAGCAGTCGGGCGAAGTGGAACATGGATCAAAGTCACCGCCATCAAAGAAGCGTTGGAACAC TACGAATACGTTGTATTCATGGATTCAGACGCCATGATGCCGTACCCCAATCTACCCATGGAATGGCTATTCAAC TACTGGGAGATCACTCCGGAGACTCTGGTTGCCATGGCGCTCGATCCAGAAGCACCTCACAACCTTGATTGGAAC GGCCGGACATTTCTCAACACTGGATTTATTATTGCCCAGCAAAGCCCTCGCACCCATGAACTCTTTGAGGCGTGG GACGATTGTCCCACTGAAACGCGCTATCCAGACTGCGCTAAATGGGGCCGAGAATGGCCACATGAGCAATCTGCA TTTGGGAACCACGTCAGAGGCAAATGGGTGCCCAGGGGTCGCAGCTACGGGATGTGTCGGGGAGTTGGTGAGGCA CTATTGGGGTGA |
| Gene | >Pro_DTO377G3_2|g7244.t1 ATGCCTCGTCCAAGGTCAGGACTCATGTTTCCTCGCCGAATAACCGCTATTTTTACTTCGAGTCTGATCGTGTGT GCGCTGCTTTTGGTATACTCCTACTTGAACAGTGTATTAATCGATCAGCCGTCCCAGTACGAGCCCACGCAAAGC AAAATGTTGAAGTTGAGGACTGACTCTAGTATAGGAAGCACTTCCTATGGACCGTCGAAAGCCACTTATACTCCT CCACGGTCCGCAAACTATACAATCCCTACATACACCCCATTACTAGAACCATATTTATTGGCCGCACAGGGAAAG CCTTCTGGGTTGCGGAGCCATTAAGGTTCACCGAACCATTAGGAAAGAAGATCCTCATTTTGGACGCCGATAGTC GGGATCTTGATGGCCCTCAAGGTCTTTTGAGCAAGGTTCCATTGAACGCGACTGGACTTCCTCCGGATGTCAGTG GAAGACTCAACCATTACATGTTCGGTAAGTAGTCACACTTCTATCTGTTCCTACGGTGTGATTGACTAGCATAGC AATGATCCATGGCTACGATTACCGACTAGTTCAGATCCCCAGAGCAGTCGGGCGAAGTGGAACATGGATCAAAGT CACCGCCATCAAAGAAGCGTTGGAACACTACGAATACGTTGTATTCATGGATTCAGACGCCATGATGCCGTACCC CAATCTACCCATGGAATGGCTATTCAACTACTGGGAGATCACTCCGGAGACTCTGGTTGCCATGGCGCTCGATCC AGAAGCACCTCACAACCTTGATTGGAACGGCCGGACATTTCTCAACACTGGATTTATTATTGCCCAGCAAAGCCC TCGCACCCATGAACTCTTTGAGGCGTGGGACGATTGTCCCACTGAAACGCGCTATCCAGACTGCGCTAAATGGGG CCGAGAATGGCCACATGAGCAATCTGCATTTGGGAACCACGTCAGGTATGAATTTAACAGATCGGAGGACATTCG AGTCCTATCTTGTGCAGAGGCAAATGGGTGCCCAGGGGTCGCAGCTACGGGATGTGTCGGGGAGTTGGTGAGGCA CTATTGGGGTGA |