© 2022 - Robin Ohm - Utrecht University - The Netherlands
Built with Python Django and Wagtail
| Protein ID | Pro_DTO377G3_2|g7223.t1 |
| Gene name | |
| Location | scaffold_21:381052..382957 |
| Strand | + |
| Gene length (bp) | 1905 |
| Transcript length (bp) | 1689 |
| Coding sequence length (bp) | 1689 |
| Protein length (aa) | 563 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00144 | Beta-lactamase | Beta-lactamase | 5.6E-23 | 108 | 411 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 5.79 | 2.06 | 9.52 |
| 5d_25C | Five days - 25 degrees Celsius | 8.48 | 3.53 | 13.44 |
| 7d_25C | Seven days - 25 degrees Celsius | 10.30 | 4.59 | 16.01 |
| 10d_25C | Ten days - 25 degrees Celsius | 15.57 | 7.73 | 23.42 |
| 7d_15C | Seven days - 15 degrees Celsius | 7.67 | 2.99 | 12.35 |
| 7d_30C | Seven days - 30 degrees Celsius | 12.00 | 5.52 | 18.48 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.308347 | no |
| 3d_25C | 7d_25C | 0.086529 | no |
| 3d_25C | 7d_15C | 0.490579 | no |
| 3d_25C | 7d_30C | 0.023923 | yes |
| 3d_25C | 10d_25C | 0.001278 | yes |
| 5d_25C | 7d_25C | 0.621759 | no |
| 5d_25C | 7d_15C | 0.823867 | no |
| 5d_25C | 7d_30C | 0.311169 | no |
| 5d_25C | 10d_25C | 0.036077 | yes |
| 7d_25C | 7d_15C | 0.423782 | no |
| 7d_25C | 7d_30C | 0.704931 | no |
| 7d_25C | 10d_25C | 0.177586 | no |
| 7d_15C | 7d_30C | 0.169807 | no |
| 7d_15C | 10d_25C | 0.014676 | yes |
| 7d_30C | 10d_25C | 0.427762 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7223.t1 MPSISYAPFFLLFSSALSFTPCPLLGPAFPPFSLDTNDKTVAGALQKLTQKFDTLVATNNGTHGDTSPNTTFSIA LFSSDAGNAEDEPFFWQYHHTAPILNQSLVGSHTADKDSIYRIGGLTEVFTVWSLLLAGDGDQIFDDPVTKHLPE LIDNTTREQDMNGRVRWEDVTVGQLASHMSGIVRDYCSTDVTLQTSSAEAGLPPLQAISIPCCGGDSKCDSSDFI RHLANQTRVAPAGETPIYSNMAFQLLGYIVEKRTGKPFSKVLHHIFDVLGMAETSIFAPNSTTAGIIPVSKEASG CVKDLATAGQAILNSTLLSKPQTNRWFKPVSHTSNPANSIGSPWVIYSAGSYPNTSMVDIYTVLSNEGNDKSLYS SYLGLVPDFGVGFAILSADSDTPADLNAHADDIGDVVLTALMETATEQAARNFGGEYKVSNINSSIVVEYDSLPG LYIQEFVSNGTDFRATLAGLVGVAKPADLSIRLYPTQLVEDSGSGSKQGFRAVFQDVTELADAGTATCVSWLDIG RLRYGGHGLDEFIFSLDQSGQAVSVEIPALRISLQKS* |
| Coding | >Pro_DTO377G3_2|g7223.t1 ATGCCTTCAATCTCTTACGCTCCATTCTTCTTGCTCTTCTCTTCGGCCCTCTCTTTCACCCCATGTCCACTCCTC GGCCCTGCATTCCCTCCGTTTTCCCTCGACACAAACGACAAAACTGTTGCAGGGGCCCTGCAAAAGCTTACACAG AAGTTTGACACCCTAGTCGCAACTAATAATGGCACTCATGGGGATACCTCGCCAAACACCACCTTTAGCATCGCC TTGTTCTCGTCTGACGCCGGGAATGCCGAAGACGAGCCCTTCTTCTGGCAATATCATCACACAGCTCCTATATTG AACCAGTCTTTGGTAGGATCTCACACTGCGGACAAAGACAGCATTTACCGCATTGGTGGTCTCACTGAAGTCTTC ACTGTGTGGAGTCTTCTTCTTGCCGGAGACGGAGACCAGATATTTGATGATCCTGTTACCAAGCACCTCCCTGAG CTGATTGATAATACTACAAGGGAACAAGATATGAATGGACGTGTAAGATGGGAGGATGTTACTGTTGGTCAGCTC GCGAGTCATATGTCTGGAATTGTGAGGGACTATTGCTCGACGGATGTGACTTTGCAAACAAGTTCTGCTGAGGCT GGACTACCTCCACTCCAGGCTATCAGCATACCTTGCTGTGGTGGTGATTCCAAGTGTGATAGCAGTGATTTCATT CGACACCTGGCCAACCAAACTCGCGTGGCTCCGGCTGGGGAAACTCCAATCTATTCCAACATGGCATTCCAGCTT CTAGGCTACATAGTAGAAAAGCGCACAGGAAAGCCCTTCAGCAAAGTCCTACATCACATATTTGACGTCCTAGGC ATGGCCGAAACCTCGATCTTTGCGCCAAACAGCACCACTGCAGGCATCATTCCCGTGAGCAAAGAAGCCAGTGGT TGTGTCAAAGATCTCGCAACAGCCGGCCAAGCAATCCTAAACTCAACCCTACTCAGCAAACCCCAAACAAATCGC TGGTTCAAGCCAGTCTCCCACACCTCTAACCCGGCCAACTCCATCGGATCCCCATGGGTCATATACAGTGCCGGC TCATACCCCAACACATCCATGGTGGACATCTACACAGTTCTCAGCAACGAAGGCAACGACAAGAGTCTTTACAGC TCATATCTCGGCCTGGTCCCTGATTTCGGCGTCGGCTTTGCCATTCTCTCGGCCGATAGCGACACCCCAGCAGAT CTCAACGCGCACGCAGATGATATCGGTGATGTCGTGCTAACAGCGTTGATGGAAACGGCTACCGAGCAGGCAGCC CGCAATTTCGGTGGCGAATACAAGGTATCCAATATCAATTCGTCTATTGTTGTTGAGTACGATAGCTTGCCTGGT TTATATATCCAGGAGTTTGTCAGTAATGGTACCGACTTTCGTGCAACGCTGGCTGGGCTCGTGGGTGTCGCGAAG CCGGCGGATCTGAGTATTCGATTGTATCCTACACAGCTGGTTGAGGATTCTGGATCTGGCTCCAAGCAGGGGTTT AGAGCTGTCTTTCAGGATGTGACTGAGTTGGCGGATGCTGGAACTGCGACTTGTGTGTCGTGGCTAGATATTGGA AGGCTCCGGTATGGAGGCCATGGCTTGGATGAGTTCATCTTTTCTCTGGATCAGAGTGGTCAGGCTGTCAGTGTT GAGATTCCAGCTTTGCGAATCTCGTTGCAAAAGAGCTAG |
| Transcript | >Pro_DTO377G3_2|g7223.t1 ATGCCTTCAATCTCTTACGCTCCATTCTTCTTGCTCTTCTCTTCGGCCCTCTCTTTCACCCCATGTCCACTCCTC GGCCCTGCATTCCCTCCGTTTTCCCTCGACACAAACGACAAAACTGTTGCAGGGGCCCTGCAAAAGCTTACACAG AAGTTTGACACCCTAGTCGCAACTAATAATGGCACTCATGGGGATACCTCGCCAAACACCACCTTTAGCATCGCC TTGTTCTCGTCTGACGCCGGGAATGCCGAAGACGAGCCCTTCTTCTGGCAATATCATCACACAGCTCCTATATTG AACCAGTCTTTGGTAGGATCTCACACTGCGGACAAAGACAGCATTTACCGCATTGGTGGTCTCACTGAAGTCTTC ACTGTGTGGAGTCTTCTTCTTGCCGGAGACGGAGACCAGATATTTGATGATCCTGTTACCAAGCACCTCCCTGAG CTGATTGATAATACTACAAGGGAACAAGATATGAATGGACGTGTAAGATGGGAGGATGTTACTGTTGGTCAGCTC GCGAGTCATATGTCTGGAATTGTGAGGGACTATTGCTCGACGGATGTGACTTTGCAAACAAGTTCTGCTGAGGCT GGACTACCTCCACTCCAGGCTATCAGCATACCTTGCTGTGGTGGTGATTCCAAGTGTGATAGCAGTGATTTCATT CGACACCTGGCCAACCAAACTCGCGTGGCTCCGGCTGGGGAAACTCCAATCTATTCCAACATGGCATTCCAGCTT CTAGGCTACATAGTAGAAAAGCGCACAGGAAAGCCCTTCAGCAAAGTCCTACATCACATATTTGACGTCCTAGGC ATGGCCGAAACCTCGATCTTTGCGCCAAACAGCACCACTGCAGGCATCATTCCCGTGAGCAAAGAAGCCAGTGGT TGTGTCAAAGATCTCGCAACAGCCGGCCAAGCAATCCTAAACTCAACCCTACTCAGCAAACCCCAAACAAATCGC TGGTTCAAGCCAGTCTCCCACACCTCTAACCCGGCCAACTCCATCGGATCCCCATGGGTCATATACAGTGCCGGC TCATACCCCAACACATCCATGGTGGACATCTACACAGTTCTCAGCAACGAAGGCAACGACAAGAGTCTTTACAGC TCATATCTCGGCCTGGTCCCTGATTTCGGCGTCGGCTTTGCCATTCTCTCGGCCGATAGCGACACCCCAGCAGAT CTCAACGCGCACGCAGATGATATCGGTGATGTCGTGCTAACAGCGTTGATGGAAACGGCTACCGAGCAGGCAGCC CGCAATTTCGGTGGCGAATACAAGGTATCCAATATCAATTCGTCTATTGTTGTTGAGTACGATAGCTTGCCTGGT TTATATATCCAGGAGTTTGTCAGTAATGGTACCGACTTTCGTGCAACGCTGGCTGGGCTCGTGGGTGTCGCGAAG CCGGCGGATCTGAGTATTCGATTGTATCCTACACAGCTGGTTGAGGATTCTGGATCTGGCTCCAAGCAGGGGTTT AGAGCTGTCTTTCAGGATGTGACTGAGTTGGCGGATGCTGGAACTGCGACTTGTGTGTCGTGGCTAGATATTGGA AGGCTCCGGTATGGAGGCCATGGCTTGGATGAGTTCATCTTTTCTCTGGATCAGAGTGGTCAGGCTGTCAGTGTT GAGATTCCAGCTTTGCGAATCTCGTTGCAAAAGAGCTAG |
| Gene | >Pro_DTO377G3_2|g7223.t1 ATGCCTTCAATCTCTTACGCTCCATTCTTCTTGCTCTTCTCTTCGGCCCTCTCTTTCACCCCATGTCCACTCCTC GGCCCTGCATTCCCTCCGTTTTCCCTCGACACAAACGACAAAACTGTTGCAGGGGCCCTGCAAAAGCTTACACAG AAGTTTGACACCCTAGTCGCAACTAATAATGGCACTCATGGGGATACCTCGCCAAACACCACCTTTAGCATCGCC TTGTTCTCGTCTGACGCCGGGAATGCCGAAGACGAGCCCTTCTTCTGGCAATATCATCACACAGCTCCTATATTG AACCAGTCTTTGGTAGGATCTCACACTGCGGACAAAGACAGCATTTACCGCATTGGTGGTCTCACTGAAGTCTTC ACTGTGTGGAGTCTTCTTCTTGCCGGAGACGGAGACCAGATATTTGATGATCCTGTTACCAAGCACCTCCCTGAG CTGATTGATAATACTACAAGGGAACAAGATATGAATGGACGTGTAAGATGGGAGGATGTTACTGTTGGTCAGCTC GCGAGTCATATGTCTGGAATTGTGAGGGACTGTGAGTAGGACACCGAACAGGGCAAGGTTGTTGGTTATCAGAGC TAATTCATGAATAGATTGCTCGACGGATGTGACTTTGCAAACAAGTTCTGCTGAGGCTGGACTACCTCCACTCCA GGCTATCAGCATACCTTGCTGTGGTGGTGATTCCAAGTGTGATAGCAGTGGTATGAGATTCAAGTCCGTGCCTGC TCTCTGTATACTAATCTCTTTATAGATTTCATTCGACACCTGGCCAACCAAACTCGCGTGGCTCCGGCTGGGGAA ACTCCAATCTATTCCAACATGGCATTCCAGCTTCTAGGCTACATAGTAGAAAAGCGCACAGGAAAGCCCTTCAGC AAAGTCCTACATCACATATTTGACGTCCTAGGCATGGCCGAAACCTCGATCTTTGCGCCAAACAGCACCACTGCA GGCATCATTCCCGTGAGCAAAGAAGCCAGTGGTTGGTCAGCACACCTCGAAGCAGACATAGCGCAAGTTCATACT CTCCCCACCACATCCCAGTCACCAATCTAACAGTGCACCCACTGCAGATCAAAATCCATTTTCTCCAGTGTCAAA GATCTCGCAACAGCCGGCCAAGCAATCCTAAACTCAACCCTACTCAGCAAACCCCAAACAAATCGCTGGTTCAAG CCAGTCTCCCACACCTCTAACCCGGCCAACTCCATCGGATCCCCATGGGTCATATACAGTGCCGGCTCATACCCC AACACATCCATGGTGGACATCTACACAGTTCTCAGCAACGAAGGCAACGACAAGAGTCTTTACAGCTCATATCTC GGCCTGGTCCCTGATTTCGGCGTCGGCTTTGCCATTCTCTCGGCCGATAGCGACACCCCAGCAGATCTCAACGCG CACGCAGATGATATCGGTGATGTCGTGCTAACAGCGTTGATGGAAACGGCTACCGAGCAGGCAGCCCGCAATTTC GGTGGCGAATACAAGGTATCCAATATCAATTCGTCTATTGTTGTTGAGTACGATAGCTTGCCTGGTTTATATATC CAGGAGTTTGTCAGTAATGGTACCGACTTTCGTGCAACGCTGGCTGGGCTCGTGGGTGTCGCGAAGCCGGCGGAT CTGAGTATTCGATTGTATCCTACACAGCTGGTTGAGGATTCTGGATCTGGCTCCAAGCAGGGGTTTAGAGCTGTC TTTCAGGATGTGACTGAGTTGGCGGATGCTGGAACTGCGACTTGTGTGTCGTGGCTAGATATTGGAAGGCTCCGG TATGGAGGCCATGGCTTGGATGAGTTCATCTTTTCTCTGGATCAGAGTGGTCAGGCTGTCAGTGTTGAGATTCCA GCTTTGCGAATCTCGTTGCAAAAGAGCTAG |