© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7182.t1 |
| Gene name | |
| Location | scaffold_21:270692..271523 |
| Strand | - |
| Gene length (bp) | 831 |
| Transcript length (bp) | 771 |
| Coding sequence length (bp) | 771 |
| Protein length (aa) | 257 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF14523 | Syntaxin_2 | Syntaxin-like protein | 1.9E-26 | 22 | 119 |
| PF05739 | SNARE | SNARE domain | 5.8E-12 | 199 | 250 |
| PF00804 | Syntaxin | Syntaxin | 7.7E-07 | 48 | 197 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016020 | membrane | Yes |
| GO:0110165 | cellular anatomical entity | No |
| GO:0005575 | cellular_component | No |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 236 | 255 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 111.13 | 66.20 | 156.06 |
| 5d_25C | Five days - 25 degrees Celsius | 112.42 | 66.93 | 157.91 |
| 7d_25C | Seven days - 25 degrees Celsius | 117.00 | 69.85 | 164.15 |
| 10d_25C | Ten days - 25 degrees Celsius | 136.30 | 82.35 | 190.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 149.19 | 90.50 | 207.87 |
| 7d_30C | Seven days - 30 degrees Celsius | 86.42 | 49.70 | 123.14 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.976225 | no |
| 3d_25C | 7d_25C | 0.877806 | no |
| 3d_25C | 7d_15C | 0.203217 | no |
| 3d_25C | 7d_30C | 0.310392 | no |
| 3d_25C | 10d_25C | 0.412713 | no |
| 5d_25C | 7d_25C | 0.909651 | no |
| 5d_25C | 7d_15C | 0.226921 | no |
| 5d_25C | 7d_30C | 0.284407 | no |
| 5d_25C | 10d_25C | 0.451043 | no |
| 7d_25C | 7d_15C | 0.312315 | no |
| 7d_25C | 7d_30C | 0.198288 | no |
| 7d_25C | 10d_25C | 0.570968 | no |
| 7d_15C | 7d_30C | 0.009124 | yes |
| 7d_15C | 10d_25C | 0.758843 | no |
| 7d_30C | 10d_25C | 0.031312 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 5951 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7182.t1 MRRAEDPQYRDDPDFDHLAEQLSDQLFTLTSNISRLSNQIALLGTKRDTERVRERVHNLLEETRTGFRDVGEGIK QVQTWEDVNPSQKWTQQKLSSEFKATLDEFQTIQRRALEKQRASAVAARTAIEGGEQPSADNDVQLQEQLLEEQH RMANQGEVDFQESLIIEREAEIRNIEQSVGELNELFRDVAHIVTEQGGQLDIISENVQNVTQDTRGANVELRSAS RYQKNARNRACCLFVILAVILAIIVLAIVLG* |
| Coding | >Pro_DTO377G3_2|g7182.t1 ATGCGCAGGGCTGAAGACCCGCAATACCGTGACGATCCGGACTTCGACCATCTGGCCGAGCAGCTCTCAGATCAG CTATTTACCTTGACATCGAACATCTCTCGCCTATCCAACCAAATTGCCCTTCTTGGAACCAAACGCGATACAGAG CGTGTGCGCGAGCGAGTTCATAATCTGCTTGAAGAGACCCGCACCGGGTTTAGGGATGTAGGAGAAGGGATTAAA CAGGTCCAGACATGGGAGGACGTCAATCCCTCCCAGAAATGGACACAGCAGAAGCTATCGTCCGAATTCAAGGCC ACCTTGGATGAGTTCCAAACTATTCAGCGTCGTGCACTCGAGAAACAGCGCGCTTCTGCAGTTGCTGCCCGTACA GCTATCGAAGGAGGCGAGCAACCGTCTGCCGACAACGATGTCCAATTACAAGAGCAGCTATTGGAGGAGCAACAC CGTATGGCGAATCAGGGCGAGGTGGACTTCCAAGAGTCCTTGATCATCGAGCGTGAGGCAGAGATCCGGAACATT GAACAAAGTGTGGGAGAGCTGAACGAGCTCTTCCGTGATGTCGCGCACATCGTTACGGAACAAGGAGGGCAGTTG GATATCATCAGCGAGAATGTCCAAAATGTCACCCAGGACACACGAGGCGCCAATGTCGAATTGCGCAGTGCTAGC AGATATCAGAAGAATGCGCGCAACAGAGCCTGCTGTCTCTTTGTGATTCTTGCTGTTATCCTTGCTATTATTGTG CTTGCAATTGTCCTCGGATAG |
| Transcript | >Pro_DTO377G3_2|g7182.t1 ATGCGCAGGGCTGAAGACCCGCAATACCGTGACGATCCGGACTTCGACCATCTGGCCGAGCAGCTCTCAGATCAG CTATTTACCTTGACATCGAACATCTCTCGCCTATCCAACCAAATTGCCCTTCTTGGAACCAAACGCGATACAGAG CGTGTGCGCGAGCGAGTTCATAATCTGCTTGAAGAGACCCGCACCGGGTTTAGGGATGTAGGAGAAGGGATTAAA CAGGTCCAGACATGGGAGGACGTCAATCCCTCCCAGAAATGGACACAGCAGAAGCTATCGTCCGAATTCAAGGCC ACCTTGGATGAGTTCCAAACTATTCAGCGTCGTGCACTCGAGAAACAGCGCGCTTCTGCAGTTGCTGCCCGTACA GCTATCGAAGGAGGCGAGCAACCGTCTGCCGACAACGATGTCCAATTACAAGAGCAGCTATTGGAGGAGCAACAC CGTATGGCGAATCAGGGCGAGGTGGACTTCCAAGAGTCCTTGATCATCGAGCGTGAGGCAGAGATCCGGAACATT GAACAAAGTGTGGGAGAGCTGAACGAGCTCTTCCGTGATGTCGCGCACATCGTTACGGAACAAGGAGGGCAGTTG GATATCATCAGCGAGAATGTCCAAAATGTCACCCAGGACACACGAGGCGCCAATGTCGAATTGCGCAGTGCTAGC AGATATCAGAAGAATGCGCGCAACAGAGCCTGCTGTCTCTTTGTGATTCTTGCTGTTATCCTTGCTATTATTGTG CTTGCAATTGTCCTCGGATAG |
| Gene | >Pro_DTO377G3_2|g7182.t1 ATGCGCAGGGCTGAAGACCCGCAATACCGTGACGATCCGGACTTCGACCATCTGGCCGAGCAGCTCTCAGATCAG CTATTTACCTTGACATCGAACATCTCTCGCCTATCCAACCAAATTGCCCTTCTTGGAACCAAACGCGATACAGAG CGTGTGCGCGAGCGAGTTCATAATCTGCTTGAAGAGACCCGCACCGGGTTTAGGGATGTAGGAGAAGGGATTAAA CAGGTCCAGACATGGGAGGACGTCAATGTATGATCCATCTAATTTTATCCACTAGCGAGAATTTCTTATTAACGT CCCAACTTATAGCCCTCCCAGAAATGGACACAGCAGAAGCTATCGTCCGAATTCAAGGCCACCTTGGATGAGTTC CAAACTATTCAGCGTCGTGCACTCGAGAAACAGCGCGCTTCTGCAGTTGCTGCCCGTACAGCTATCGAAGGAGGC GAGCAACCGTCTGCCGACAACGATGTCCAATTACAAGAGCAGCTATTGGAGGAGCAACACCGTATGGCGAATCAG GGCGAGGTGGACTTCCAAGAGTCCTTGATCATCGAGCGTGAGGCAGAGATCCGGAACATTGAACAAAGTGTGGGA GAGCTGAACGAGCTCTTCCGTGATGTCGCGCACATCGTTACGGAACAAGGAGGGCAGTTGGATATCATCAGCGAG AATGTCCAAAATGTCACCCAGGACACACGAGGCGCCAATGTCGAATTGCGCAGTGCTAGCAGATATCAGAAGAAT GCGCGCAACAGAGCCTGCTGTCTCTTTGTGATTCTTGCTGTTATCCTTGCTATTATTGTGCTTGCAATTGTCCTC GGATAG |