© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g716.t1 |
| Gene name | |
| Location | scaffold_01:1854469..1855666 |
| Strand | + |
| Gene length (bp) | 1197 |
| Transcript length (bp) | 1074 |
| Coding sequence length (bp) | 1074 |
| Protein length (aa) | 358 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF03029 | ATP_bind_1 | Conserved hypothetical ATP binding protein | 3.3E-78 | 7 | 255 |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 17 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 82.47 | 49.59 | 115.36 |
| 5d_25C | Five days - 25 degrees Celsius | 89.11 | 53.35 | 124.87 |
| 7d_25C | Seven days - 25 degrees Celsius | 79.16 | 46.81 | 111.51 |
| 10d_25C | Ten days - 25 degrees Celsius | 84.39 | 50.54 | 118.25 |
| 7d_15C | Seven days - 15 degrees Celsius | 147.39 | 87.65 | 207.13 |
| 7d_30C | Seven days - 30 degrees Celsius | 70.61 | 41.60 | 99.62 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.806907 | no |
| 3d_25C | 7d_25C | 0.904641 | no |
| 3d_25C | 7d_15C | 0.005235 | yes |
| 3d_25C | 7d_30C | 0.568582 | no |
| 3d_25C | 10d_25C | 0.948952 | no |
| 5d_25C | 7d_25C | 0.688166 | no |
| 5d_25C | 7d_15C | 0.015833 | yes |
| 5d_25C | 7d_30C | 0.346776 | no |
| 5d_25C | 10d_25C | 0.872372 | no |
| 7d_25C | 7d_15C | 0.002761 | yes |
| 7d_25C | 7d_30C | 0.700171 | no |
| 7d_25C | 10d_25C | 0.847962 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.010735 | yes |
| 7d_30C | 10d_25C | 0.507509 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g716.t1 MPFAQLVIGPPGAGKSTYCNGMHQFLGAIGRKCSVVNLDPANDKTSYPCALDVRDLVRLEDIMEEDKLGPNGGVL YALEELENNFDWLENGLKELGEDYILFDCPGQVELFTHHTSLRNIFYKIQKMGIRLIVVHLVDSYALTLPSMYIS ALLLSLRAMLQLDLPHINVLTKIDNLANYAPLPFNLDYYTEVQDLSYLLPELESESSRLSHEKFGKLNQTIIDLV EEFGLVAFETLAVEDKKSMMSLLRAIDRASGYAFGPAEGANDTVWQVAVREGMGVTDVRDVQERWIDAKDEYDRQ EEMDLEEEVRVRNAASQVEATGAVDGGPDEDDGHDYDEELEKWKKDMPDSGVRVHRK* |
| Coding | >Pro_DTO377G3_2|g716.t1 ATGCCTTTTGCCCAGCTGGTGATTGGTCCGCCGGGCGCTGGCAAGTCCACATACTGCAATGGTATGCATCAGTTC CTGGGCGCAATTGGCCGGAAATGCTCTGTCGTCAACCTTGACCCCGCCAACGACAAGACTTCATATCCATGCGCG CTGGACGTACGTGATTTAGTCAGGCTAGAGGACATCATGGAAGAGGACAAGTTGGGTCCGAACGGTGGTGTCTTA TATGCTCTTGAAGAGCTCGAAAATAATTTTGACTGGTTGGAAAACGGGCTGAAGGAGCTTGGTGAGGATTATATT CTTTTCGATTGTCCTGGTCAAGTTGAGCTATTTACACATCATACTTCATTACGCAACATCTTCTACAAAATCCAG AAGATGGGCATCCGGCTTATCGTCGTCCACCTCGTCGACTCCTACGCCCTCACCCTCCCCTCAATGTACATATCC GCCCTCCTCCTCTCCCTCCGCGCCATGCTCCAACTCGACCTCCCACACATAAATGTCCTCACCAAAATCGACAAC CTTGCCAACTACGCTCCACTCCCTTTCAACCTAGACTACTATACCGAAGTACAAGACCTGTCCTACCTACTCCCA GAATTGGAAAGCGAGTCCTCACGACTTTCACACGAGAAATTCGGCAAATTGAACCAGACTATCATCGATCTGGTC GAGGAATTCGGACTCGTTGCCTTCGAGACGCTGGCCGTCGAAGACAAAAAGAGTATGATGAGTCTCTTGCGCGCT ATTGACCGTGCATCCGGGTATGCCTTTGGTCCCGCCGAGGGCGCCAACGATACTGTCTGGCAAGTGGCTGTTCGG GAGGGCATGGGTGTCACAGACGTGCGTGATGTGCAGGAGCGCTGGATAGATGCCAAGGATGAATACGATCGGCAG GAGGAGATGGATTTAGAGGAGGAAGTTCGTGTGCGCAATGCGGCGAGCCAGGTCGAAGCGACGGGTGCCGTGGAT GGCGGACCTGACGAGGATGACGGCCATGACTACGACGAGGAGTTGGAGAAGTGGAAAAAGGATATGCCAGACAGT GGCGTGCGGGTGCACCGCAAGTAA |
| Transcript | >Pro_DTO377G3_2|g716.t1 ATGCCTTTTGCCCAGCTGGTGATTGGTCCGCCGGGCGCTGGCAAGTCCACATACTGCAATGGTATGCATCAGTTC CTGGGCGCAATTGGCCGGAAATGCTCTGTCGTCAACCTTGACCCCGCCAACGACAAGACTTCATATCCATGCGCG CTGGACGTACGTGATTTAGTCAGGCTAGAGGACATCATGGAAGAGGACAAGTTGGGTCCGAACGGTGGTGTCTTA TATGCTCTTGAAGAGCTCGAAAATAATTTTGACTGGTTGGAAAACGGGCTGAAGGAGCTTGGTGAGGATTATATT CTTTTCGATTGTCCTGGTCAAGTTGAGCTATTTACACATCATACTTCATTACGCAACATCTTCTACAAAATCCAG AAGATGGGCATCCGGCTTATCGTCGTCCACCTCGTCGACTCCTACGCCCTCACCCTCCCCTCAATGTACATATCC GCCCTCCTCCTCTCCCTCCGCGCCATGCTCCAACTCGACCTCCCACACATAAATGTCCTCACCAAAATCGACAAC CTTGCCAACTACGCTCCACTCCCTTTCAACCTAGACTACTATACCGAAGTACAAGACCTGTCCTACCTACTCCCA GAATTGGAAAGCGAGTCCTCACGACTTTCACACGAGAAATTCGGCAAATTGAACCAGACTATCATCGATCTGGTC GAGGAATTCGGACTCGTTGCCTTCGAGACGCTGGCCGTCGAAGACAAAAAGAGTATGATGAGTCTCTTGCGCGCT ATTGACCGTGCATCCGGGTATGCCTTTGGTCCCGCCGAGGGCGCCAACGATACTGTCTGGCAAGTGGCTGTTCGG GAGGGCATGGGTGTCACAGACGTGCGTGATGTGCAGGAGCGCTGGATAGATGCCAAGGATGAATACGATCGGCAG GAGGAGATGGATTTAGAGGAGGAAGTTCGTGTGCGCAATGCGGCGAGCCAGGTCGAAGCGACGGGTGCCGTGGAT GGCGGACCTGACGAGGATGACGGCCATGACTACGACGAGGAGTTGGAGAAGTGGAAAAAGGATATGCCAGACAGT GGCGTGCGGGTGCACCGCAAGTAA |
| Gene | >Pro_DTO377G3_2|g716.t1 ATGCCTTTTGCCCAGCTGGTGATTGGTCCGCCGGGCGCTGGCAAGTCCACATACTGCAATGGTATGCATCAGTTC CTGGGCGCAATTGGCCGGAAATGCTCTGTCGTCAACCTTGACCCCGCCAACGACAAGACTTCATATCCATGCGCG CTGGACGTACGTGATTTAGTCAGGCTAGAGGACATCATGGAAGAGGACAAGTTGGGTCCGAACGGTGGTGTCTTA TATGCTCTTGAAGAGCTCGAAAATAATTTTGACTGGTTGGAAAACGGGCTGAAGGAGCTTGGTGGTATGTCTGAC ATGTCCTGGCTGCATACATTTACTGACTGGTTTGATGAATTCTCAGAGGATTATATTCTTTTCGATTGTCCTGGT CAAGTTGAGCTATTTACACATCATACTTCATTACGCAACATCTTCTACAAAATCCAGAAGATGGGCATCCGGGTT AGTGGCAGCAAATCTTCCAGCGGAACACAAAGGAAAGTCAGCTAACCAGACTCCTCATAACAGCTTATCGTCGTC CACCTCGTCGACTCCTACGCCCTCACCCTCCCCTCAATGTACATATCCGCCCTCCTCCTCTCCCTCCGCGCCATG CTCCAACTCGACCTCCCACACATAAATGTCCTCACCAAAATCGACAACCTTGCCAACTACGCTCCACTCCCTTTC AACCTAGACTACTATACCGAAGTACAAGACCTGTCCTACCTACTCCCAGAATTGGAAAGCGAGTCCTCACGACTT TCACACGAGAAATTCGGCAAATTGAACCAGACTATCATCGATCTGGTCGAGGAATTCGGACTCGTTGCCTTCGAG ACGCTGGCCGTCGAAGACAAAAAGAGTATGATGAGTCTCTTGCGCGCTATTGACCGTGCATCCGGGTATGCCTTT GGTCCCGCCGAGGGCGCCAACGATACTGTCTGGCAAGTGGCTGTTCGGGAGGGCATGGGTGTCACAGACGTGCGT GATGTGCAGGAGCGCTGGATAGATGCCAAGGATGAATACGATCGGCAGGAGGAGATGGATTTAGAGGAGGAAGTT CGTGTGCGCAATGCGGCGAGCCAGGTCGAAGCGACGGGTGCCGTGGATGGCGGACCTGACGAGGATGACGGCCAT GACTACGACGAGGAGTTGGAGAAGTGGAAAAAGGATATGCCAGACAGTGGCGTGCGGGTGCACCGCAAGTAA |