Fungal Genomics

at Utrecht University

General Properties

Protein IDPro_DTO377G3_2|g7154.t1
Gene name
Locationscaffold_21:203905..205465
Strand+
Gene length (bp)1560
Transcript length (bp)1239
Coding sequence length (bp)1239
Protein length (aa) 413

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PFAM Domains

(None)

GO

(None)

SignalP

[Help with interpreting these statistics]
SignalP signal predicted Location
(based on Ymax)
D score
(significance: > 0.45)
No 1 - 66 0.5

Transmembrane Domains

Domain # Start End Length
1 20 42 22
2 55 77 22
3 101 123 22
4 130 152 22
5 177 199 22
6 212 234 22

Transcription Factor Class

(None)

Expression data

Analysis 1: Genome-wide gene expression in conidia of Penicillium roqueforti during growth at various temperatures and for various amounts of time. Published in Punt et al., 2020.

Expression values

Label Description Expression (RPKM) Confidence interval (low) Confidence interval (high)
3d_25C Three days - 25 degrees Celsius 21.78 10.64 32.92
5d_25C Five days - 25 degrees Celsius 13.87 5.95 21.79
7d_25C Seven days - 25 degrees Celsius 11.26 4.54 17.98
10d_25C Ten days - 25 degrees Celsius 3.68 0.91 6.45
7d_15C Seven days - 15 degrees Celsius 125.02 73.84 176.21
7d_30C Seven days - 30 degrees Celsius 17.76 8.09 27.43

Differential expression

Label1 Label2 Q-value Significant difference
3d_25C 5d_25C 0.129833 no
3d_25C 7d_25C 0.027043 yes
3d_25C 7d_15C 0.000700 yes
3d_25C 7d_30C 0.547594 no
3d_25C 10d_25C 0.000700 yes
5d_25C 7d_25C 0.587637 no
5d_25C 7d_15C 0.000700 yes
5d_25C 7d_30C 0.480358 no
5d_25C 10d_25C 0.000700 yes
7d_25C 7d_15C 0.000700 yes
7d_25C 7d_30C 0.149982 no
7d_25C 10d_25C 0.002761 yes
7d_15C 7d_30C 0.000700 yes
7d_15C 10d_25C 0.000700 yes
7d_30C 10d_25C 0.000700 yes

Sequences

Type of sequenceSequence
Locus Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded.
Protein >Pro_DTO377G3_2|g7154.t1
MSDGPHSRDVNPPDVNQGPRILIATAITTFAALFTVLARFYVRIFLIRNVGWDDYTMALTMLLSLCGFAIIVPEV
IYGAGRHMIYVQETSVKAMHLNYATQGIYMWAIGLVKVSIGLFLLRFAPRKGYKVFIWVVIVLMTLYTAICFLTL
IFECSDIRSNWDPSVKSKCFSRKQLLVLTYTNTALNILTDLIFAVLPVFMLRHLQVNRRVKASLICILGLGVFAC
AAAFVKLSILSSYGSAGDFLWDFSNLTIWVVTECNTGIIAGTLPTLKPLFKRFLGTYGSQSKTTREYPGSNKYKL
HSMSRSRGGPLQSRGHKSGNLSVIEYDADPQNHRSQLASTTGSAAYAGSQRSNSSEERILPIQGEGIVRTTEVIV
SREQNPPQMSPGPGQTSPRLNRMGSLNGLRISADDRV*
Coding >Pro_DTO377G3_2|g7154.t1
ATGTCGGACGGTCCGCATAGCAGGGATGTGAATCCCCCAGATGTCAATCAAGGCCCTAGGATTCTCATAGCCACG
GCTATCACTACTTTCGCCGCGTTATTCACCGTTTTGGCCAGGTTCTACGTGCGCATCTTCCTGATTCGCAATGTC
GGCTGGGATGACTATACGATGGCCCTGACCATGCTGCTGTCTCTCTGCGGGTTCGCCATTATCGTCCCCGAGGTG
ATATACGGTGCAGGCAGGCATATGATCTATGTTCAAGAAACGTCTGTAAAGGCAATGCATTTGAATTATGCTACC
CAGGGCATTTACATGTGGGCCATTGGCCTGGTGAAGGTATCAATTGGGTTGTTTTTGCTTCGTTTCGCACCTCGA
AAAGGATACAAGGTCTTTATCTGGGTGGTCATTGTTCTCATGACTCTCTACACTGCGATCTGCTTCTTGACTCTT
ATCTTTGAGTGTTCAGATATCCGATCAAATTGGGATCCTTCGGTGAAATCAAAGTGCTTCTCTCGTAAACAACTT
TTGGTTCTGACCTATACAAACACTGCATTGAATATCCTGACTGATCTGATCTTCGCGGTCCTACCGGTTTTCATG
CTACGTCATCTTCAAGTCAATCGCAGAGTGAAAGCCTCTCTCATCTGTATCCTAGGCCTGGGAGTTTTTGCCTGC
GCAGCCGCCTTCGTCAAGCTCTCTATCCTATCCAGCTATGGCAGCGCCGGCGACTTCCTCTGGGACTTTTCAAAC
CTCACAATCTGGGTCGTCACGGAATGCAACACAGGTATCATCGCGGGCACGCTCCCAACCCTCAAACCCCTCTTC
AAGAGATTCCTCGGCACATACGGCTCCCAATCCAAAACGACACGCGAGTACCCCGGCAGCAATAAATACAAATTG
CACTCGATGTCGCGATCACGGGGCGGACCGCTCCAATCCCGCGGCCACAAAAGCGGCAACCTCAGCGTCATCGAG
TACGATGCCGACCCGCAGAACCACCGCTCCCAGCTCGCGTCTACGACCGGCTCGGCGGCGTATGCGGGGAGTCAA
CGGAGCAATTCCAGCGAGGAGCGGATCTTGCCGATTCAGGGTGAGGGCATCGTGCGCACGACCGAGGTGATCGTT
TCGCGCGAGCAGAATCCGCCACAGATGTCGCCCGGCCCCGGACAGACTTCGCCGAGATTGAATAGGATGGGGTCG
CTGAATGGATTACGTATCAGCGCCGATGATAGGGTTTAG
Transcript >Pro_DTO377G3_2|g7154.t1
ATGTCGGACGGTCCGCATAGCAGGGATGTGAATCCCCCAGATGTCAATCAAGGCCCTAGGATTCTCATAGCCACG
GCTATCACTACTTTCGCCGCGTTATTCACCGTTTTGGCCAGGTTCTACGTGCGCATCTTCCTGATTCGCAATGTC
GGCTGGGATGACTATACGATGGCCCTGACCATGCTGCTGTCTCTCTGCGGGTTCGCCATTATCGTCCCCGAGGTG
ATATACGGTGCAGGCAGGCATATGATCTATGTTCAAGAAACGTCTGTAAAGGCAATGCATTTGAATTATGCTACC
CAGGGCATTTACATGTGGGCCATTGGCCTGGTGAAGGTATCAATTGGGTTGTTTTTGCTTCGTTTCGCACCTCGA
AAAGGATACAAGGTCTTTATCTGGGTGGTCATTGTTCTCATGACTCTCTACACTGCGATCTGCTTCTTGACTCTT
ATCTTTGAGTGTTCAGATATCCGATCAAATTGGGATCCTTCGGTGAAATCAAAGTGCTTCTCTCGTAAACAACTT
TTGGTTCTGACCTATACAAACACTGCATTGAATATCCTGACTGATCTGATCTTCGCGGTCCTACCGGTTTTCATG
CTACGTCATCTTCAAGTCAATCGCAGAGTGAAAGCCTCTCTCATCTGTATCCTAGGCCTGGGAGTTTTTGCCTGC
GCAGCCGCCTTCGTCAAGCTCTCTATCCTATCCAGCTATGGCAGCGCCGGCGACTTCCTCTGGGACTTTTCAAAC
CTCACAATCTGGGTCGTCACGGAATGCAACACAGGTATCATCGCGGGCACGCTCCCAACCCTCAAACCCCTCTTC
AAGAGATTCCTCGGCACATACGGCTCCCAATCCAAAACGACACGCGAGTACCCCGGCAGCAATAAATACAAATTG
CACTCGATGTCGCGATCACGGGGCGGACCGCTCCAATCCCGCGGCCACAAAAGCGGCAACCTCAGCGTCATCGAG
TACGATGCCGACCCGCAGAACCACCGCTCCCAGCTCGCGTCTACGACCGGCTCGGCGGCGTATGCGGGGAGTCAA
CGGAGCAATTCCAGCGAGGAGCGGATCTTGCCGATTCAGGGTGAGGGCATCGTGCGCACGACCGAGGTGATCGTT
TCGCGCGAGCAGAATCCGCCACAGATGTCGCCCGGCCCCGGACAGACTTCGCCGAGATTGAATAGGATGGGGTCG
CTGAATGGATTACGTATCAGCGCCGATGATAGGGTTTAG
Gene >Pro_DTO377G3_2|g7154.t1
ATGTCGGACGGTCCGCATAGCAGGGATGTGAATCCCCCAGATGTCAATCAAGGCCCTAGGATTCTCATAGCCACG
GCTATCACTACTTTCGCCGCGTTATTCACCGTTTTGGCCAGGTTCTACGTGCGCATCTTCCTGATTCGCAATGTC
GGCTGGGATGACTATACGATGGCCCTGACCATGCTGCTGTCTCTCTGCGGGTTCGCCATTATCGTCCCCGAGGTG
ATATACGGTGCAGGCAGGCATATGATCTATGTTCAAGAAACGTCTGTAAAGGCAATGCATTTGAATTATGCTACC
CAGGGCATTTACATGTGGGCCATTGGCCTGGTGAAGGTATCAATTGGGTTGTTTTTGCTTCGTTTCGCACCTCGA
AAAGGATACAAGGTCTTTATCTGGGTGGTCATTGGTGTGTAAAGGCTTTATATCTTCTTCTGCGTCTTACTGACG
AGCCCGGCGCATTGCAGTTCTCATGACTCTCTACACTGCGATCTGCTTCTTGGTGCGTGCCTTATCCCCACTTTC
GATCGACAGCAACTAACAATCCGATCGATCGCAGACTCTTATCTTTGAGTGTTCAGATATCCGATCAAATTGGGA
TCCTTCGGTGAAATCAAAGTGCTTCTCTCGTAAACAACTTTTGGTTCTGACCTATACAAACACTGGTGAGATTCG
CTCTGTATGGGTTTAAATAAACGTTTTTTAACTTGAACAGCATTGAATATCCTGACTGATCTGATCTTCGCGGTC
CTACCGGTTTTCATGCTACGGTATGCTATGGTCATCGCTTTCTTCCGATGAGATGCTAATACAATACAGTCATCT
TCAAGTCAATCGCAGAGTGAAAGCCTCTCTCATCTGTATCCTAGGCCTGGGAGTTTTGTACGCGACTTCCAATCC
AATCCCGTCATAAGCCATGCTAATTCATCTACTCCCTTAGTGCCTGCGCAGCCGCCTTCGTCAAGCTCTCTATCC
TATCCAGCTATGGCAGCGCCGGCGACTTCCTCTGGGACTTTTCAAACCTCACAATCTGGGTCGTGTAAGTTGACT
AGTTATCCACCACTTTAAGCCATTCTAACAAAAAATAGCACGGAATGCAACACAGGTATCATCGCGGGCACGCTC
CCAACCCTCAAACCCCTCTTCAAGAGATTCCTCGGCACATACGGCTCCCAATCCAAAACGACACGCGAGTACCCC
GGCAGCAATAAATACAAATTGCACTCGATGTCGCGATCACGGGGCGGACCGCTCCAATCCCGCGGCCACAAAAGC
GGCAACCTCAGCGTCATCGAGTACGATGCCGACCCGCAGAACCACCGCTCCCAGCTCGCGTCTACGACCGGCTCG
GCGGCGTATGCGGGGAGTCAACGGAGCAATTCCAGCGAGGAGCGGATCTTGCCGATTCAGGGTGAGGGCATCGTG
CGCACGACCGAGGTGATCGTTTCGCGCGAGCAGAATCCGCCACAGATGTCGCCCGGCCCCGGACAGACTTCGCCG
AGATTGAATAGGATGGGGTCGCTGAATGGATTACGTATCAGCGCCGATGATAGGGTTTAG

© 2022 - Robin Ohm - Utrecht University - The Netherlands

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