© 2023 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7154.t1 |
| Gene name | |
| Location | scaffold_21:203905..205465 |
| Strand | + |
| Gene length (bp) | 1560 |
| Transcript length (bp) | 1239 |
| Coding sequence length (bp) | 1239 |
| Protein length (aa) | 413 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 20 | 42 | 22 |
| 2 | 55 | 77 | 22 |
| 3 | 101 | 123 | 22 |
| 4 | 130 | 152 | 22 |
| 5 | 177 | 199 | 22 |
| 6 | 212 | 234 | 22 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 21.78 | 10.64 | 32.92 |
| 5d_25C | Five days - 25 degrees Celsius | 13.87 | 5.95 | 21.79 |
| 7d_25C | Seven days - 25 degrees Celsius | 11.26 | 4.54 | 17.98 |
| 10d_25C | Ten days - 25 degrees Celsius | 3.68 | 0.91 | 6.45 |
| 7d_15C | Seven days - 15 degrees Celsius | 125.02 | 73.84 | 176.21 |
| 7d_30C | Seven days - 30 degrees Celsius | 17.76 | 8.09 | 27.43 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.129833 | no |
| 3d_25C | 7d_25C | 0.027043 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.547594 | no |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.587637 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.480358 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.149982 | no |
| 7d_25C | 10d_25C | 0.002761 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Orthofinder run ID | 2 |
| Orthogroup | 167 |
| Change Orthofinder run |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
Download genbank file of locus (reverse complement)
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7154.t1 MSDGPHSRDVNPPDVNQGPRILIATAITTFAALFTVLARFYVRIFLIRNVGWDDYTMALTMLLSLCGFAIIVPEV IYGAGRHMIYVQETSVKAMHLNYATQGIYMWAIGLVKVSIGLFLLRFAPRKGYKVFIWVVIVLMTLYTAICFLTL IFECSDIRSNWDPSVKSKCFSRKQLLVLTYTNTALNILTDLIFAVLPVFMLRHLQVNRRVKASLICILGLGVFAC AAAFVKLSILSSYGSAGDFLWDFSNLTIWVVTECNTGIIAGTLPTLKPLFKRFLGTYGSQSKTTREYPGSNKYKL HSMSRSRGGPLQSRGHKSGNLSVIEYDADPQNHRSQLASTTGSAAYAGSQRSNSSEERILPIQGEGIVRTTEVIV SREQNPPQMSPGPGQTSPRLNRMGSLNGLRISADDRV* |
| Coding | >Pro_DTO377G3_2|g7154.t1 ATGTCGGACGGTCCGCATAGCAGGGATGTGAATCCCCCAGATGTCAATCAAGGCCCTAGGATTCTCATAGCCACG GCTATCACTACTTTCGCCGCGTTATTCACCGTTTTGGCCAGGTTCTACGTGCGCATCTTCCTGATTCGCAATGTC GGCTGGGATGACTATACGATGGCCCTGACCATGCTGCTGTCTCTCTGCGGGTTCGCCATTATCGTCCCCGAGGTG ATATACGGTGCAGGCAGGCATATGATCTATGTTCAAGAAACGTCTGTAAAGGCAATGCATTTGAATTATGCTACC CAGGGCATTTACATGTGGGCCATTGGCCTGGTGAAGGTATCAATTGGGTTGTTTTTGCTTCGTTTCGCACCTCGA AAAGGATACAAGGTCTTTATCTGGGTGGTCATTGTTCTCATGACTCTCTACACTGCGATCTGCTTCTTGACTCTT ATCTTTGAGTGTTCAGATATCCGATCAAATTGGGATCCTTCGGTGAAATCAAAGTGCTTCTCTCGTAAACAACTT TTGGTTCTGACCTATACAAACACTGCATTGAATATCCTGACTGATCTGATCTTCGCGGTCCTACCGGTTTTCATG CTACGTCATCTTCAAGTCAATCGCAGAGTGAAAGCCTCTCTCATCTGTATCCTAGGCCTGGGAGTTTTTGCCTGC GCAGCCGCCTTCGTCAAGCTCTCTATCCTATCCAGCTATGGCAGCGCCGGCGACTTCCTCTGGGACTTTTCAAAC CTCACAATCTGGGTCGTCACGGAATGCAACACAGGTATCATCGCGGGCACGCTCCCAACCCTCAAACCCCTCTTC AAGAGATTCCTCGGCACATACGGCTCCCAATCCAAAACGACACGCGAGTACCCCGGCAGCAATAAATACAAATTG CACTCGATGTCGCGATCACGGGGCGGACCGCTCCAATCCCGCGGCCACAAAAGCGGCAACCTCAGCGTCATCGAG TACGATGCCGACCCGCAGAACCACCGCTCCCAGCTCGCGTCTACGACCGGCTCGGCGGCGTATGCGGGGAGTCAA CGGAGCAATTCCAGCGAGGAGCGGATCTTGCCGATTCAGGGTGAGGGCATCGTGCGCACGACCGAGGTGATCGTT TCGCGCGAGCAGAATCCGCCACAGATGTCGCCCGGCCCCGGACAGACTTCGCCGAGATTGAATAGGATGGGGTCG CTGAATGGATTACGTATCAGCGCCGATGATAGGGTTTAG |
| Transcript | >Pro_DTO377G3_2|g7154.t1 ATGTCGGACGGTCCGCATAGCAGGGATGTGAATCCCCCAGATGTCAATCAAGGCCCTAGGATTCTCATAGCCACG GCTATCACTACTTTCGCCGCGTTATTCACCGTTTTGGCCAGGTTCTACGTGCGCATCTTCCTGATTCGCAATGTC GGCTGGGATGACTATACGATGGCCCTGACCATGCTGCTGTCTCTCTGCGGGTTCGCCATTATCGTCCCCGAGGTG ATATACGGTGCAGGCAGGCATATGATCTATGTTCAAGAAACGTCTGTAAAGGCAATGCATTTGAATTATGCTACC CAGGGCATTTACATGTGGGCCATTGGCCTGGTGAAGGTATCAATTGGGTTGTTTTTGCTTCGTTTCGCACCTCGA AAAGGATACAAGGTCTTTATCTGGGTGGTCATTGTTCTCATGACTCTCTACACTGCGATCTGCTTCTTGACTCTT ATCTTTGAGTGTTCAGATATCCGATCAAATTGGGATCCTTCGGTGAAATCAAAGTGCTTCTCTCGTAAACAACTT TTGGTTCTGACCTATACAAACACTGCATTGAATATCCTGACTGATCTGATCTTCGCGGTCCTACCGGTTTTCATG CTACGTCATCTTCAAGTCAATCGCAGAGTGAAAGCCTCTCTCATCTGTATCCTAGGCCTGGGAGTTTTTGCCTGC GCAGCCGCCTTCGTCAAGCTCTCTATCCTATCCAGCTATGGCAGCGCCGGCGACTTCCTCTGGGACTTTTCAAAC CTCACAATCTGGGTCGTCACGGAATGCAACACAGGTATCATCGCGGGCACGCTCCCAACCCTCAAACCCCTCTTC AAGAGATTCCTCGGCACATACGGCTCCCAATCCAAAACGACACGCGAGTACCCCGGCAGCAATAAATACAAATTG CACTCGATGTCGCGATCACGGGGCGGACCGCTCCAATCCCGCGGCCACAAAAGCGGCAACCTCAGCGTCATCGAG TACGATGCCGACCCGCAGAACCACCGCTCCCAGCTCGCGTCTACGACCGGCTCGGCGGCGTATGCGGGGAGTCAA CGGAGCAATTCCAGCGAGGAGCGGATCTTGCCGATTCAGGGTGAGGGCATCGTGCGCACGACCGAGGTGATCGTT TCGCGCGAGCAGAATCCGCCACAGATGTCGCCCGGCCCCGGACAGACTTCGCCGAGATTGAATAGGATGGGGTCG CTGAATGGATTACGTATCAGCGCCGATGATAGGGTTTAG |
| Gene | >Pro_DTO377G3_2|g7154.t1 ATGTCGGACGGTCCGCATAGCAGGGATGTGAATCCCCCAGATGTCAATCAAGGCCCTAGGATTCTCATAGCCACG GCTATCACTACTTTCGCCGCGTTATTCACCGTTTTGGCCAGGTTCTACGTGCGCATCTTCCTGATTCGCAATGTC GGCTGGGATGACTATACGATGGCCCTGACCATGCTGCTGTCTCTCTGCGGGTTCGCCATTATCGTCCCCGAGGTG ATATACGGTGCAGGCAGGCATATGATCTATGTTCAAGAAACGTCTGTAAAGGCAATGCATTTGAATTATGCTACC CAGGGCATTTACATGTGGGCCATTGGCCTGGTGAAGGTATCAATTGGGTTGTTTTTGCTTCGTTTCGCACCTCGA AAAGGATACAAGGTCTTTATCTGGGTGGTCATTGGTGTGTAAAGGCTTTATATCTTCTTCTGCGTCTTACTGACG AGCCCGGCGCATTGCAGTTCTCATGACTCTCTACACTGCGATCTGCTTCTTGGTGCGTGCCTTATCCCCACTTTC GATCGACAGCAACTAACAATCCGATCGATCGCAGACTCTTATCTTTGAGTGTTCAGATATCCGATCAAATTGGGA TCCTTCGGTGAAATCAAAGTGCTTCTCTCGTAAACAACTTTTGGTTCTGACCTATACAAACACTGGTGAGATTCG CTCTGTATGGGTTTAAATAAACGTTTTTTAACTTGAACAGCATTGAATATCCTGACTGATCTGATCTTCGCGGTC CTACCGGTTTTCATGCTACGGTATGCTATGGTCATCGCTTTCTTCCGATGAGATGCTAATACAATACAGTCATCT TCAAGTCAATCGCAGAGTGAAAGCCTCTCTCATCTGTATCCTAGGCCTGGGAGTTTTGTACGCGACTTCCAATCC AATCCCGTCATAAGCCATGCTAATTCATCTACTCCCTTAGTGCCTGCGCAGCCGCCTTCGTCAAGCTCTCTATCC TATCCAGCTATGGCAGCGCCGGCGACTTCCTCTGGGACTTTTCAAACCTCACAATCTGGGTCGTGTAAGTTGACT AGTTATCCACCACTTTAAGCCATTCTAACAAAAAATAGCACGGAATGCAACACAGGTATCATCGCGGGCACGCTC CCAACCCTCAAACCCCTCTTCAAGAGATTCCTCGGCACATACGGCTCCCAATCCAAAACGACACGCGAGTACCCC GGCAGCAATAAATACAAATTGCACTCGATGTCGCGATCACGGGGCGGACCGCTCCAATCCCGCGGCCACAAAAGC GGCAACCTCAGCGTCATCGAGTACGATGCCGACCCGCAGAACCACCGCTCCCAGCTCGCGTCTACGACCGGCTCG GCGGCGTATGCGGGGAGTCAACGGAGCAATTCCAGCGAGGAGCGGATCTTGCCGATTCAGGGTGAGGGCATCGTG CGCACGACCGAGGTGATCGTTTCGCGCGAGCAGAATCCGCCACAGATGTCGCCCGGCCCCGGACAGACTTCGCCG AGATTGAATAGGATGGGGTCGCTGAATGGATTACGTATCAGCGCCGATGATAGGGTTTAG |