© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7139.t1 |
| Gene name | |
| Location | scaffold_21:164131..165757 |
| Strand | - |
| Gene length (bp) | 1626 |
| Transcript length (bp) | 1455 |
| Coding sequence length (bp) | 1455 |
| Protein length (aa) | 485 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00232 | Glyco_hydro_1 | Glycosyl hydrolase family 1 | 1.5E-150 | 4 | 473 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0008150 | biological_process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0071704 | organic substance metabolic process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 48 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 9.06 | 3.76 | 14.35 |
| 5d_25C | Five days - 25 degrees Celsius | 16.99 | 8.28 | 25.70 |
| 7d_25C | Seven days - 25 degrees Celsius | 24.55 | 13.11 | 35.99 |
| 10d_25C | Ten days - 25 degrees Celsius | 29.58 | 16.12 | 43.04 |
| 7d_15C | Seven days - 15 degrees Celsius | 4.97 | 1.51 | 8.42 |
| 7d_30C | Seven days - 30 degrees Celsius | 20.08 | 10.08 | 30.08 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.029318 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.083802 | no |
| 3d_25C | 7d_30C | 0.004045 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.177209 | no |
| 5d_25C | 7d_15C | 0.000700 | yes |
| 5d_25C | 7d_30C | 0.615819 | no |
| 5d_25C | 10d_25C | 0.027506 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.510222 | no |
| 7d_25C | 10d_25C | 0.530881 | no |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.138113 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7139.t1 MSVPLPPDFEWGFATASYQIEGAVNEDGRGKSIWDTFCHLEPTRTKGDNGDIACDHYHRFEEDFDLLSRYGAKAY RFSISWSRIIPLGGRNDPVNEAGIAFYNKLIDSLLARGITPWVTLYHWDLPQGIHDRYGGWLNVEESQLDFERYA QICYERFGDRVKNWITLNEPWIASIFGYATGGNAPGRSSINPQCTEGDTTTEPWIVGKALIMSHARAVVLYNREF RASQQGQIGISLNGDYYEPWDSEDERDHQAAERRMQFHIGWFANPVCLAQDYPECMREQLGERLPRFTESDFSLL READIDFYGMNYYTSQFARHRDQPASETDFLGNVDELQENKQGVLIGEKSGVHWLLSTPSLFRKHLTRVYRAYGK PIYITENGCPCPGEDKMTAEEAVNDTYRIKYFEDHLDAVGTARTEDGSDIKGYFAWSLMDNLEWSDGYGVRFGVT FTDYNTLERTPKQSALLLKGMFDKRMGGNASESK* |
| Coding | >Pro_DTO377G3_2|g7139.t1 ATGTCAGTACCCTTGCCCCCCGATTTCGAATGGGGATTTGCAACAGCCTCGTATCAGATCGAAGGAGCTGTGAAT GAAGACGGGCGTGGAAAATCGATCTGGGATACTTTCTGCCACCTTGAGCCAACAAGGACCAAGGGAGACAATGGC GACATCGCTTGCGACCACTACCACCGATTTGAGGAGGATTTCGATCTTCTCTCGAGATACGGCGCAAAAGCATAC CGATTCTCAATTTCCTGGTCGCGAATCATTCCGCTAGGAGGAAGAAACGACCCAGTCAACGAAGCAGGCATCGCG TTCTATAACAAACTCATTGATTCGTTGCTTGCCAGGGGAATCACACCATGGGTCACTCTCTATCATTGGGATCTT CCTCAAGGCATTCATGATCGATACGGAGGTTGGTTGAATGTGGAGGAGTCACAGCTTGACTTTGAGCGGTATGCG CAGATTTGCTATGAGAGATTTGGGGACCGAGTCAAGAACTGGATCACACTGAATGAGCCGTGGATTGCTTCTATT TTCGGATACGCTACTGGCGGAAATGCGCCCGGGCGTAGCAGTATAAATCCGCAGTGCACGGAGGGCGATACTACT ACGGAGCCATGGATTGTGGGGAAAGCCTTGATCATGAGCCACGCTCGCGCTGTGGTTTTGTATAACCGGGAATTC CGAGCTTCTCAGCAAGGGCAGATTGGAATCTCCTTGAATGGCGATTACTACGAGCCCTGGGATAGTGAGGATGAG CGCGACCACCAAGCTGCTGAACGCCGGATGCAGTTCCATATCGGATGGTTTGCGAACCCCGTTTGTTTAGCACAA GACTACCCCGAATGCATGAGAGAGCAACTCGGCGAGAGACTTCCTAGGTTCACAGAGTCGGACTTTTCTCTGCTT AGGGAGGCCGACATAGACTTCTACGGAATGAATTATTACACCTCCCAATTTGCCCGGCATCGCGATCAGCCTGCC TCTGAGACTGATTTCTTGGGAAATGTGGATGAACTACAAGAAAACAAGCAAGGTGTATTGATCGGAGAGAAAAGT GGTGTGCATTGGCTCCTGTCAACCCCGAGCCTTTTCCGGAAGCACTTGACACGAGTATATCGTGCATATGGCAAG CCTATCTATATCACAGAAAACGGGTGCCCGTGTCCTGGTGAAGACAAGATGACAGCTGAAGAGGCCGTCAACGAT ACCTACCGAATCAAATACTTCGAAGATCATCTCGATGCGGTCGGAACAGCACGCACAGAAGATGGCTCTGATATC AAAGGATATTTCGCATGGTCATTGATGGACAACCTAGAATGGTCCGATGGATACGGGGTTCGCTTCGGCGTTACC TTCACTGATTACAACACCCTGGAAAGGACGCCGAAGCAATCCGCATTGTTGCTGAAAGGAATGTTTGATAAACGC ATGGGTGGCAACGCTTCCGAATCCAAATAG |
| Transcript | >Pro_DTO377G3_2|g7139.t1 ATGTCAGTACCCTTGCCCCCCGATTTCGAATGGGGATTTGCAACAGCCTCGTATCAGATCGAAGGAGCTGTGAAT GAAGACGGGCGTGGAAAATCGATCTGGGATACTTTCTGCCACCTTGAGCCAACAAGGACCAAGGGAGACAATGGC GACATCGCTTGCGACCACTACCACCGATTTGAGGAGGATTTCGATCTTCTCTCGAGATACGGCGCAAAAGCATAC CGATTCTCAATTTCCTGGTCGCGAATCATTCCGCTAGGAGGAAGAAACGACCCAGTCAACGAAGCAGGCATCGCG TTCTATAACAAACTCATTGATTCGTTGCTTGCCAGGGGAATCACACCATGGGTCACTCTCTATCATTGGGATCTT CCTCAAGGCATTCATGATCGATACGGAGGTTGGTTGAATGTGGAGGAGTCACAGCTTGACTTTGAGCGGTATGCG CAGATTTGCTATGAGAGATTTGGGGACCGAGTCAAGAACTGGATCACACTGAATGAGCCGTGGATTGCTTCTATT TTCGGATACGCTACTGGCGGAAATGCGCCCGGGCGTAGCAGTATAAATCCGCAGTGCACGGAGGGCGATACTACT ACGGAGCCATGGATTGTGGGGAAAGCCTTGATCATGAGCCACGCTCGCGCTGTGGTTTTGTATAACCGGGAATTC CGAGCTTCTCAGCAAGGGCAGATTGGAATCTCCTTGAATGGCGATTACTACGAGCCCTGGGATAGTGAGGATGAG CGCGACCACCAAGCTGCTGAACGCCGGATGCAGTTCCATATCGGATGGTTTGCGAACCCCGTTTGTTTAGCACAA GACTACCCCGAATGCATGAGAGAGCAACTCGGCGAGAGACTTCCTAGGTTCACAGAGTCGGACTTTTCTCTGCTT AGGGAGGCCGACATAGACTTCTACGGAATGAATTATTACACCTCCCAATTTGCCCGGCATCGCGATCAGCCTGCC TCTGAGACTGATTTCTTGGGAAATGTGGATGAACTACAAGAAAACAAGCAAGGTGTATTGATCGGAGAGAAAAGT GGTGTGCATTGGCTCCTGTCAACCCCGAGCCTTTTCCGGAAGCACTTGACACGAGTATATCGTGCATATGGCAAG CCTATCTATATCACAGAAAACGGGTGCCCGTGTCCTGGTGAAGACAAGATGACAGCTGAAGAGGCCGTCAACGAT ACCTACCGAATCAAATACTTCGAAGATCATCTCGATGCGGTCGGAACAGCACGCACAGAAGATGGCTCTGATATC AAAGGATATTTCGCATGGTCATTGATGGACAACCTAGAATGGTCCGATGGATACGGGGTTCGCTTCGGCGTTACC TTCACTGATTACAACACCCTGGAAAGGACGCCGAAGCAATCCGCATTGTTGCTGAAAGGAATGTTTGATAAACGC ATGGGTGGCAACGCTTCCGAATCCAAATAG |
| Gene | >Pro_DTO377G3_2|g7139.t1 ATGTCAGTACCCTTGCCCCCCGATTTCGAATGGGGATTTGCAACAGCCTCGTATCAGATCGAAGGAGCTGTGAAT GAAGACGGGCGTGGAAAATCGATCTGGGATACTTTCTGCCACCTTGAGCCAACAAGGACCAAGGGAGACAATGGC GACATCGCTTGCGACCACTACCACCGATTTGAGGAGGATTTCGATCTTCTCTCGAGATACGGCGCAAAAGCATAC CGATTCTCAATTTCCTGGTCGCGAATCATTCCGCTAGGAGGAAGAAACGACCCAGTCAACGAAGCAGGCATCGCG TTCTATAACAAACTCATTGATTCGTTGCTTGCCAGGGGAATCACACCATGGGTCACTCTCTATCATTGGGATCTT CCTCAAGGCATTCATGATCGATACGGAGGTTGGTTGAATGTGGAGGAGTCACAGCTTGACTTTGAGCGGTATGCG CAGATTTGCTATGAGAGATTTGGGGACCGAGTCAAGAACTGGATCACACTGAATGAGCCGTGGATTGCTTCTATT TTCGTATGTTTCTCCAGTCCCTTGTCCTTTCTTTTTTATCCTTTCGGATAGCATCTAACACGTGTCTAGGGATAC GCTACTGGCGGAAATGCGCCCGGGCGTAGCAGTATAAATCCGCAGTGCACGGAGGGCGATACTACTACGGAGCCA TGGATTGTGGGGAAAGCCTTGATCATGAGCCACGCTCGCGCTGTGGTTTTGTATAACCGGGAATTCCGAGCTTCT CAGCAAGGGCAGATTGGAATCTCCTTGAATGGCGATTACTACGAGCCCTGGGATAGTGAGGATGAGCGCGACCAC CAAGCTGCTGAACGCCGGATGCAGTTCCATATCGGATGGTTTGCGAACCCCGTTTGGTAGGTTTTTCGGAGTCTC AGATAGCAAAAGCACACAACTAACACCTTTGACAGTTTAGCACAAGACTACCCCGAATGCATGAGAGAGCAACTC GGCGAGAGACTTCCTAGGTTCACAGAGTCGGACTTTTCTCTGCTTAGGGAGGCCGACATAGACTTCTACGGAATG AATTATTACACCTCCCAATTTGCCCGGCATCGCGATCAGCCTGCCTCTGAGACTGATTTCTTGGGAAATGTGGAT GAACTACAAGAAAACAAGCAAGGTGTATTGATCGGAGAGAAAAGTGGTGTGCATTGGCTCCTGTCAACCCCGAGC CTTTTCCGGAAGCACTTGACACGAGTATATCGTGCATATGGCAAGCCTATCTATATCACAGAAAACGGGTGCCCG TGTCCTGGTGAAGACAAGATGACAGCTGAAGAGGCCGTCAACGATACCTACCGAATCAAATACTTCGAAGATCAT CTCGATGCGGTCGGAACAGCACGCACAGAAGATGGCTCTGATATCAAAGGATATTTCGCATGGTCATTGATGGAC AACCTAGGTACGTGTCTTGTTTCATACTTCAAGACCTTTGAGCTAATTTTTCTTCCAGAATGGTCCGATGGATAC GGGGTTCGCTTCGGCGTTACCTTCACTGATTACAACACCCTGGAAAGGACGCCGAAGCAATCCGCATTGTTGCTG AAAGGAATGTTTGATAAACGCATGGGTGGCAACGCTTCCGAATCCAAATAG |