Protein ID | Pro_DTO377G3_2|g7125.t1 |
Gene name | |
Location | scaffold_21:125359..128393 |
Strand | - |
Gene length (bp) | 3034 |
Transcript length (bp) | 2919 |
Coding sequence length (bp) | 2919 |
Protein length (aa) | 973 |
PFAM Domain ID | Short name | Long name | E-value | Start | End |
---|---|---|---|---|---|
PF00400 | WD40 | WD domain, G-beta repeat | 4.6E-07 | 102 | 139 |
PF00400 | WD40 | WD domain, G-beta repeat | 1.5E-01 | 146 | 218 |
PF00400 | WD40 | WD domain, G-beta repeat | 7.9E-05 | 224 | 260 |
PF00400 | WD40 | WD domain, G-beta repeat | 7.9E-05 | 421 | 455 |
PF00400 | WD40 | WD domain, G-beta repeat | 2.8E-01 | 465 | 518 |
PF00400 | WD40 | WD domain, G-beta repeat | 1.5E-04 | 537 | 570 |
PF00400 | WD40 | WD domain, G-beta repeat | 3.3E-03 | 576 | 627 |
PF00400 | WD40 | WD domain, G-beta repeat | 1.8E-01 | 632 | 696 |
PF08625 | Utp13 | Utp13 specific WD40 associated domain | 1.2E-49 | 776 | 940 |
GO Term | Description | Terminal node |
---|---|---|
GO:0032040 | small-subunit processome | Yes |
GO:0005515 | protein binding | Yes |
GO:0006364 | rRNA processing | Yes |
GO:0032991 | protein-containing complex | No |
GO:0043170 | macromolecule metabolic process | No |
GO:0006139 | nucleobase-containing compound metabolic process | No |
GO:0016070 | RNA metabolic process | No |
GO:0008150 | biological_process | No |
GO:0006396 | RNA processing | No |
GO:0006725 | cellular aromatic compound metabolic process | No |
GO:0071704 | organic substance metabolic process | No |
GO:1901360 | organic cyclic compound metabolic process | No |
GO:0005575 | cellular_component | No |
GO:0008152 | metabolic process | No |
GO:0030684 | preribosome | No |
GO:0005488 | binding | No |
GO:0044238 | primary metabolic process | No |
GO:0034470 | ncRNA processing | No |
GO:0034641 | cellular nitrogen compound metabolic process | No |
GO:0046483 | heterocycle metabolic process | No |
GO:0003674 | molecular_function | No |
GO:0006807 | nitrogen compound metabolic process | No |
GO:0034660 | ncRNA metabolic process | No |
GO:0016072 | rRNA metabolic process | No |
GO:1990904 | ribonucleoprotein complex | No |
GO:0090304 | nucleic acid metabolic process | No |
GO:0044237 | cellular metabolic process | No |
GO:0009987 | cellular process | No |
SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
---|---|---|
No | 1 - 40 | 0.45 |
Type of sequence | Sequence |
---|---|
Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
Protein | >Pro_DTO377G3_2|g7125.t1 MSKAIVKTTFEASRTLRPIYTGGSTALDASGRILLSCVGEDALIVDLETGNQLASLEGDGEIVTGLAITPSASHA IVCSRSMSMRIYGLSTFDETSQTIEAKLLRTLKPHTAPVVTIAVDPTGTLLATGGADGSIKVWDIRGGFVTHTFH GHGGVISALCFFEVPTADSDAKSSKKNKSKQQAAEDDDEDMESSARTGSTAGFRLASGSEDGKMRVWDLHKRKSI ASLESHVSLVRSLSFSPSENALISASRDKTVIVWDARTWKTRRIIPVLESVEAAAFIADSSLCVIGGENGKLRVW DCNRGSEITEEQEAGEEFESVVAIQYSPGLPFVLTVHADQTLRLHSLESLSDYKPGSTLKPLAIIRRISGNDDEI IDLAYIGPDRSMLALATNTESIRVVSVAPSEDRPSNQGEEYFGADVTHLEGHDDIIICIDADWSGHWLATGAKDN TARLWRIDPKTSSYTCFAIFTGHAESLGAIALPRVPPPVGSAAYNDPLNHPPAFLITGSQDRTIKRWDTSKLAPL TEEKPHYPKAVYTRKAHEKDINAIDVDSTSELFASASQDRTVKIWAADEGSSVGVLRGHKRGVWSVRFAPQGTPI INSDSRTSTSRGLAVTGSGDKTVKLWSLSDYSCLLTFEGHTNSVLKVLWLPPPQVSNNQTDDDEDDEEATTARKN ATQDHPLIASAAADGLVKIWSPYTGELETTLDNHIDRVWALASPTPSGSRADVKPISSKFNTTPYALASGSADAT VTFWTDTTSSTYTAAVNASSARVEQDQELQNYIRAGAYREAITLALQLNHPGRLLSLFTSAINTADDPTLPAEDR ERSAASLSGNPSIDEVLQNLDPANLRTLLLRLRDWNTNARTSRVSQRILYALFRSYPASTFVELATQSVRGKEGR AAAGLKDILQALAAYTERHYRRVEELVDDSYLVEWVLGEMDGGVGLGGLRDLTVGNVSDEGEHEKDVIMLEA* |
Coding | >Pro_DTO377G3_2|g7125.t1 ATGTCGAAAGCTATCGTCAAAACCACTTTCGAGGCGTCCCGTACGCTCCGCCCCATTTACACCGGCGGTAGCACT GCGCTGGATGCCAGTGGGCGCATCTTGCTGAGCTGCGTGGGCGAAGATGCATTGATCGTCGATTTGGAGACTGGC AACCAGCTTGCTAGCCTGGAAGGAGATGGAGAAATTGTCACAGGTTTGGCCATCACGCCTTCCGCCTCACACGCT ATTGTCTGCTCGCGCTCGATGTCCATGCGAATCTACGGCCTCTCAACTTTTGACGAGACTTCCCAGACCATTGAA GCAAAACTTCTCCGAACCCTTAAGCCTCACACAGCTCCCGTCGTGACCATTGCTGTTGATCCTACTGGTACACTG CTTGCCACTGGTGGTGCTGATGGCTCAATCAAGGTCTGGGATATCAGAGGTGGTTTTGTCACTCACACTTTCCAT GGTCACGGTGGTGTCATTTCTGCGCTTTGCTTTTTCGAGGTTCCTACTGCCGACAGCGATGCGAAGTCATCCAAA AAGAACAAGTCTAAGCAACAAGCTGCGGAGGATGATGATGAAGATATGGAAAGCTCCGCCCGTACGGGCTCTACT GCAGGATTCCGCCTAGCATCTGGCAGTGAAGATGGCAAAATGCGTGTATGGGATCTGCACAAGAGAAAGTCCATT GCGTCGCTCGAGTCACATGTTTCACTTGTCCGCAGTTTGTCCTTTTCTCCGTCAGAGAACGCATTGATCTCGGCC AGCCGAGACAAGACTGTCATCGTCTGGGATGCGCGTACTTGGAAGACTCGCAGAATCATTCCTGTTTTGGAGAGC GTGGAAGCTGCGGCTTTCATTGCGGATAGCAGTCTGTGCGTTATAGGTGGAGAAAATGGCAAATTGCGAGTTTGG GACTGCAATCGTGGAAGTGAGATCACAGAGGAACAAGAGGCTGGCGAGGAGTTCGAAAGCGTCGTCGCTATCCAG TATTCCCCTGGTTTGCCTTTTGTCCTTACAGTTCATGCGGATCAGACTCTTCGGCTCCACTCGCTCGAGTCGCTG TCTGATTATAAGCCAGGGTCAACTTTGAAGCCTTTGGCGATTATCCGCCGTATTTCCGGCAATGACGACGAGATC ATTGATCTGGCTTACATTGGGCCTGATCGATCTATGCTTGCTTTGGCCACCAACACCGAGAGCATTCGTGTAGTT TCGGTTGCTCCCTCGGAAGACCGACCCTCAAATCAGGGAGAGGAGTATTTCGGTGCTGATGTCACACACCTGGAA GGCCACGACGATATTATCATTTGCATTGATGCAGATTGGTCAGGACACTGGCTAGCAACTGGTGCCAAAGACAAT ACAGCCCGTCTTTGGCGTATTGACCCAAAGACATCCTCTTATACTTGCTTTGCTATATTCACTGGCCACGCCGAA TCGTTGGGAGCAATCGCCTTGCCGCGTGTGCCACCTCCTGTTGGCAGTGCCGCATATAACGACCCCTTGAACCAC CCACCAGCATTTTTAATCACTGGCTCGCAAGATCGCACAATCAAGCGATGGGATACAAGCAAGTTAGCTCCACTG ACAGAAGAAAAGCCACACTATCCTAAGGCCGTCTATACTCGCAAGGCTCACGAAAAAGATATTAATGCTATTGAT GTCGATTCTACGTCCGAGCTATTTGCCTCAGCATCACAAGATCGCACCGTGAAGATCTGGGCCGCCGACGAAGGC TCGTCGGTTGGTGTCCTCCGTGGCCATAAGCGAGGTGTTTGGTCGGTGCGATTCGCCCCGCAGGGCACACCGATC ATCAACTCAGATTCACGTACTAGCACAAGCCGTGGCCTAGCAGTCACAGGCTCTGGTGACAAGACCGTCAAACTG TGGAGTCTGTCTGACTACAGCTGTCTCTTGACTTTCGAGGGTCATACCAACAGTGTTCTCAAAGTCCTCTGGCTC CCACCCCCGCAGGTCTCGAACAACCAAACCGATGATGACGAGGATGACGAAGAGGCCACAACAGCACGCAAAAAC GCCACCCAAGACCATCCCCTTATCGCCTCCGCGGCCGCAGACGGTCTGGTCAAGATATGGTCCCCCTACACAGGC GAACTCGAAACCACCCTAGACAACCACATCGACCGAGTCTGGGCGCTAGCCAGCCCAACTCCGTCCGGCTCACGC GCAGACGTGAAGCCAATCTCCTCCAAGTTCAACACCACTCCCTACGCCCTTGCCTCCGGTTCTGCCGACGCAACA GTGACCTTCTGGACTGATACGACATCATCCACCTACACAGCCGCTGTCAACGCCAGTTCTGCTCGCGTCGAACAG GACCAAGAACTGCAGAACTACATCCGCGCCGGTGCCTACCGTGAAGCCATCACCCTGGCCCTGCAACTCAACCAC CCGGGTAGATTGCTCTCGCTCTTCACCTCCGCCATCAACACCGCAGACGACCCAACCCTCCCGGCCGAGGACCGC GAGCGCTCTGCGGCCAGTCTGTCCGGTAACCCGTCCATCGATGAGGTCCTGCAGAACTTGGACCCTGCCAATCTG CGCACTCTCCTGCTCCGTCTCCGGGACTGGAACACCAATGCACGCACCTCGCGCGTGTCACAGCGCATTTTGTAT GCTCTGTTCCGCTCTTACCCCGCGTCCACTTTCGTGGAGCTTGCGACCCAGTCCGTCCGCGGGAAGGAGGGTCGT GCCGCGGCTGGTCTGAAGGATATTCTCCAGGCGCTGGCTGCGTACACTGAGAGGCACTACCGGCGAGTTGAGGAG CTGGTCGATGACAGCTACCTGGTTGAGTGGGTTCTCGGTGAGATGGATGGTGGCGTTGGACTTGGTGGTCTTCGT GATTTGACTGTGGGCAATGTCAGCGACGAGGGAGAGCATGAGAAGGACGTTATTATGTTGGAAGCATAG |
Transcript | >Pro_DTO377G3_2|g7125.t1 ATGTCGAAAGCTATCGTCAAAACCACTTTCGAGGCGTCCCGTACGCTCCGCCCCATTTACACCGGCGGTAGCACT GCGCTGGATGCCAGTGGGCGCATCTTGCTGAGCTGCGTGGGCGAAGATGCATTGATCGTCGATTTGGAGACTGGC AACCAGCTTGCTAGCCTGGAAGGAGATGGAGAAATTGTCACAGGTTTGGCCATCACGCCTTCCGCCTCACACGCT ATTGTCTGCTCGCGCTCGATGTCCATGCGAATCTACGGCCTCTCAACTTTTGACGAGACTTCCCAGACCATTGAA GCAAAACTTCTCCGAACCCTTAAGCCTCACACAGCTCCCGTCGTGACCATTGCTGTTGATCCTACTGGTACACTG CTTGCCACTGGTGGTGCTGATGGCTCAATCAAGGTCTGGGATATCAGAGGTGGTTTTGTCACTCACACTTTCCAT GGTCACGGTGGTGTCATTTCTGCGCTTTGCTTTTTCGAGGTTCCTACTGCCGACAGCGATGCGAAGTCATCCAAA AAGAACAAGTCTAAGCAACAAGCTGCGGAGGATGATGATGAAGATATGGAAAGCTCCGCCCGTACGGGCTCTACT GCAGGATTCCGCCTAGCATCTGGCAGTGAAGATGGCAAAATGCGTGTATGGGATCTGCACAAGAGAAAGTCCATT GCGTCGCTCGAGTCACATGTTTCACTTGTCCGCAGTTTGTCCTTTTCTCCGTCAGAGAACGCATTGATCTCGGCC AGCCGAGACAAGACTGTCATCGTCTGGGATGCGCGTACTTGGAAGACTCGCAGAATCATTCCTGTTTTGGAGAGC GTGGAAGCTGCGGCTTTCATTGCGGATAGCAGTCTGTGCGTTATAGGTGGAGAAAATGGCAAATTGCGAGTTTGG GACTGCAATCGTGGAAGTGAGATCACAGAGGAACAAGAGGCTGGCGAGGAGTTCGAAAGCGTCGTCGCTATCCAG TATTCCCCTGGTTTGCCTTTTGTCCTTACAGTTCATGCGGATCAGACTCTTCGGCTCCACTCGCTCGAGTCGCTG TCTGATTATAAGCCAGGGTCAACTTTGAAGCCTTTGGCGATTATCCGCCGTATTTCCGGCAATGACGACGAGATC ATTGATCTGGCTTACATTGGGCCTGATCGATCTATGCTTGCTTTGGCCACCAACACCGAGAGCATTCGTGTAGTT TCGGTTGCTCCCTCGGAAGACCGACCCTCAAATCAGGGAGAGGAGTATTTCGGTGCTGATGTCACACACCTGGAA GGCCACGACGATATTATCATTTGCATTGATGCAGATTGGTCAGGACACTGGCTAGCAACTGGTGCCAAAGACAAT ACAGCCCGTCTTTGGCGTATTGACCCAAAGACATCCTCTTATACTTGCTTTGCTATATTCACTGGCCACGCCGAA TCGTTGGGAGCAATCGCCTTGCCGCGTGTGCCACCTCCTGTTGGCAGTGCCGCATATAACGACCCCTTGAACCAC CCACCAGCATTTTTAATCACTGGCTCGCAAGATCGCACAATCAAGCGATGGGATACAAGCAAGTTAGCTCCACTG ACAGAAGAAAAGCCACACTATCCTAAGGCCGTCTATACTCGCAAGGCTCACGAAAAAGATATTAATGCTATTGAT GTCGATTCTACGTCCGAGCTATTTGCCTCAGCATCACAAGATCGCACCGTGAAGATCTGGGCCGCCGACGAAGGC TCGTCGGTTGGTGTCCTCCGTGGCCATAAGCGAGGTGTTTGGTCGGTGCGATTCGCCCCGCAGGGCACACCGATC ATCAACTCAGATTCACGTACTAGCACAAGCCGTGGCCTAGCAGTCACAGGCTCTGGTGACAAGACCGTCAAACTG TGGAGTCTGTCTGACTACAGCTGTCTCTTGACTTTCGAGGGTCATACCAACAGTGTTCTCAAAGTCCTCTGGCTC CCACCCCCGCAGGTCTCGAACAACCAAACCGATGATGACGAGGATGACGAAGAGGCCACAACAGCACGCAAAAAC GCCACCCAAGACCATCCCCTTATCGCCTCCGCGGCCGCAGACGGTCTGGTCAAGATATGGTCCCCCTACACAGGC GAACTCGAAACCACCCTAGACAACCACATCGACCGAGTCTGGGCGCTAGCCAGCCCAACTCCGTCCGGCTCACGC GCAGACGTGAAGCCAATCTCCTCCAAGTTCAACACCACTCCCTACGCCCTTGCCTCCGGTTCTGCCGACGCAACA GTGACCTTCTGGACTGATACGACATCATCCACCTACACAGCCGCTGTCAACGCCAGTTCTGCTCGCGTCGAACAG GACCAAGAACTGCAGAACTACATCCGCGCCGGTGCCTACCGTGAAGCCATCACCCTGGCCCTGCAACTCAACCAC CCGGGTAGATTGCTCTCGCTCTTCACCTCCGCCATCAACACCGCAGACGACCCAACCCTCCCGGCCGAGGACCGC GAGCGCTCTGCGGCCAGTCTGTCCGGTAACCCGTCCATCGATGAGGTCCTGCAGAACTTGGACCCTGCCAATCTG CGCACTCTCCTGCTCCGTCTCCGGGACTGGAACACCAATGCACGCACCTCGCGCGTGTCACAGCGCATTTTGTAT GCTCTGTTCCGCTCTTACCCCGCGTCCACTTTCGTGGAGCTTGCGACCCAGTCCGTCCGCGGGAAGGAGGGTCGT GCCGCGGCTGGTCTGAAGGATATTCTCCAGGCGCTGGCTGCGTACACTGAGAGGCACTACCGGCGAGTTGAGGAG CTGGTCGATGACAGCTACCTGGTTGAGTGGGTTCTCGGTGAGATGGATGGTGGCGTTGGACTTGGTGGTCTTCGT GATTTGACTGTGGGCAATGTCAGCGACGAGGGAGAGCATGAGAAGGACGTTATTATGTTGGAAGCATAG |
Gene | >Pro_DTO377G3_2|g7125.t1 ATGTCGAAAGCTATCGTCAAAACCACTTTCGAGGCGTCCCGTACGCTCCGCCCCATTTACACCGGCGGTAGCACT GCGCTGGATGCCAGTGGGCGCATCTTGCTGAGCTGCGTGGGCGAAGATGCATTGATCGTCGATTTGGAGACTGGC AACCAGCTTGCTAGCCTGGAAGGAGTATGTTTTGTCGCCTTGGGATATTCGTCAATTGCAAAGCGCTAACCACAT AATCGCTACAGGATGGAGAAATTGTCACAGGTTTGGCCAGTAAGTATTCTATGCCTTGAGAATTGAGAATAGCGC ACTAACGATTCGCCTAGTCACGCCTTCCGCCTCACACGCTATTGTCTGCTCGCGCTCGATGTCCATGCGAATCTA CGGCCTCTCAACTTTTGACGAGACTTCCCAGACCATTGAAGCAAAACTTCTCCGAACCCTTAAGCCTCACACAGC TCCCGTCGTGACCATTGCTGTTGATCCTACTGGTACACTGCTTGCCACTGGTGGTGCTGATGGCTCAATCAAGGT CTGGGATATCAGAGGTGGTTTTGTCACTCACACTTTCCATGGTCACGGTGGTGTCATTTCTGCGCTTTGCTTTTT CGAGGTTCCTACTGCCGACAGCGATGCGAAGTCATCCAAAAAGAACAAGTCTAAGCAACAAGCTGCGGAGGATGA TGATGAAGATATGGAAAGCTCCGCCCGTACGGGCTCTACTGCAGGATTCCGCCTAGCATCTGGCAGTGAAGATGG CAAAATGCGTGTATGGGATCTGCACAAGAGAAAGTCCATTGCGTCGCTCGAGTCACATGTTTCACTTGTCCGCAG TTTGTCCTTTTCTCCGTCAGAGAACGCATTGATCTCGGCCAGCCGAGACAAGACTGTCATCGTCTGGGATGCGCG TACTTGGAAGACTCGCAGAATCATTCCTGTTTTGGAGAGCGTGGAAGCTGCGGCTTTCATTGCGGATAGCAGTCT GTGCGTTATAGGTGGAGAAAATGGCAAATTGCGAGTTTGGGACTGCAATCGTGGAAGTGAGATCACAGAGGAACA AGAGGCTGGCGAGGAGTTCGAAAGCGTCGTCGCTATCCAGTATTCCCCTGGTTTGCCTTTTGTCCTTACAGTTCA TGCGGATCAGACTCTTCGGCTCCACTCGCTCGAGTCGCTGTCTGATTATAAGCCAGGGTCAACTTTGAAGCCTTT GGCGATTATCCGCCGTATTTCCGGCAATGACGACGAGATCATTGATCTGGCTTACATTGGGCCTGATCGATCTAT GCTTGCTTTGGCCACCAACACCGAGAGCATTCGTGTAGTTTCGGTTGCTCCCTCGGAAGACCGACCCTCAAATCA GGGAGAGGAGTATTTCGGTGCTGATGTCACACACCTGGAAGGCCACGACGATATTATCATTTGCATTGATGCAGA TTGGTCAGGACACTGGCTAGCAACTGGTGCCAAAGACAATACAGCCCGTCTTTGGCGTATTGACCCAAAGACATC CTCTTATACTTGCTTTGCTATATTCACTGGCCACGCCGAATCGTTGGGAGCAATCGCCTTGCCGCGTGTGCCACC TCCTGTTGGCAGTGCCGCATATAACGACCCCTTGAACCACCCACCAGCATTTTTAATCACTGGCTCGCAAGATCG CACAATCAAGCGATGGGATACAAGCAAGTTAGCTCCACTGACAGAAGAAAAGCCACACTATCCTAAGGCCGTCTA TACTCGCAAGGCTCACGAAAAAGATATTAATGCTATTGATGTCGATTCTACGTCCGAGCTATTTGCCTCAGCATC ACAAGATCGCACCGTGAAGATCTGGGCCGCCGACGAAGGCTCGTCGGTTGGTGTCCTCCGTGGCCATAAGCGAGG TGTTTGGTCGGTGCGATTCGCCCCGCAGGGCACACCGATCATCAACTCAGATTCACGTACTAGCACAAGCCGTGG CCTAGCAGTCACAGGCTCTGGTGACAAGACCGTCAAACTGTGGAGTCTGTCTGACTACAGCTGTCTCTTGACTTT CGAGGGTCATACCAACAGTGTTCTCAAAGTCCTCTGGCTCCCACCCCCGCAGGTCTCGAACAACCAAACCGATGA TGACGAGGATGACGAAGAGGCCACAACAGCACGCAAAAACGCCACCCAAGACCATCCCCTTATCGCCTCCGCGGC CGCAGACGGTCTGGTCAAGATATGGTCCCCCTACACAGGCGAACTCGAAACCACCCTAGACAACCACATCGACCG AGTCTGGGCGCTAGCCAGCCCAACTCCGTCCGGCTCACGCGCAGACGTGAAGCCAATCTCCTCCAAGTTCAACAC CACTCCCTACGCCCTTGCCTCCGGTTCTGCCGACGCAACAGTGACCTTCTGGACTGATACGACATCATCCACCTA CACAGCCGCTGTCAACGCCAGTTCTGCTCGCGTCGAACAGGACCAAGAACTGCAGAACTACATCCGCGCCGGTGC CTACCGTGAAGCCATCACCCTGGCCCTGCAACTCAACCACCCGGGTAGATTGCTCTCGCTCTTCACCTCCGCCAT CAACACCGCAGACGACCCAACCCTCCCGGCCGAGGACCGCGAGCGCTCTGCGGCCAGTCTGTCCGGTAACCCGTC CATCGATGAGGTCCTGCAGAACTTGGACCCTGCCAATCTGCGCACTCTCCTGCTCCGTCTCCGGGACTGGAACAC CAATGCACGCACCTCGCGCGTGTCACAGCGCATTTTGTATGCTCTGTTCCGCTCTTACCCCGCGTCCACTTTCGT GGAGCTTGCGACCCAGTCCGTCCGCGGGAAGGAGGGTCGTGCCGCGGCTGGTCTGAAGGATATTCTCCAGGCGCT GGCTGCGTACACTGAGAGGCACTACCGGCGAGTTGAGGAGCTGGTCGATGACAGCTACCTGGTTGAGTGGGTTCT CGGTGAGATGGATGGTGGCGTTGGACTTGGTGGTCTTCGTGATTTGACTGTGGGCAATGTCAGCGACGAGGGAGA GCATGAGAAGGACGTTATTATGTTGGAAGCATAG |