© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7119.t1 |
| Gene name | |
| Location | scaffold_21:107562..109202 |
| Strand | - |
| Gene length (bp) | 1640 |
| Transcript length (bp) | 1371 |
| Coding sequence length (bp) | 1371 |
| Protein length (aa) | 457 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF16491 | Peptidase_M48_N | CAAX prenyl protease N-terminal, five membrane helices | 1.1E-64 | 40 | 224 |
| PF01435 | Peptidase_M48 | Peptidase family M48 | 5.6E-44 | 228 | 430 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0006508 | proteolysis | Yes |
| GO:0004222 | metalloendopeptidase activity | Yes |
| GO:0008152 | metabolic process | No |
| GO:0071704 | organic substance metabolic process | No |
| GO:0016787 | hydrolase activity | No |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0008233 | peptidase activity | No |
| GO:0140096 | catalytic activity, acting on a protein | No |
| GO:0043170 | macromolecule metabolic process | No |
| GO:0006807 | nitrogen compound metabolic process | No |
| GO:0004175 | endopeptidase activity | No |
| GO:1901564 | organonitrogen compound metabolic process | No |
| GO:0019538 | protein metabolic process | No |
| GO:0044238 | primary metabolic process | No |
| GO:0008150 | biological_process | No |
| GO:0008237 | metallopeptidase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 29 | 0.5 |
| Domain # | Start | End | Length |
|---|---|---|---|
| 1 | 15 | 37 | 22 |
| 2 | 124 | 146 | 22 |
| 3 | 166 | 188 | 22 |
| 4 | 195 | 217 | 22 |
| 5 | 310 | 329 | 19 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 170.67 | 103.50 | 237.85 |
| 5d_25C | Five days - 25 degrees Celsius | 164.71 | 100.56 | 228.86 |
| 7d_25C | Seven days - 25 degrees Celsius | 197.70 | 119.88 | 275.52 |
| 10d_25C | Ten days - 25 degrees Celsius | 262.08 | 156.37 | 367.79 |
| 7d_15C | Seven days - 15 degrees Celsius | 186.96 | 113.67 | 260.24 |
| 7d_30C | Seven days - 30 degrees Celsius | 183.35 | 110.78 | 255.93 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.914570 | no |
| 3d_25C | 7d_25C | 0.562376 | no |
| 3d_25C | 7d_15C | 0.752161 | no |
| 3d_25C | 7d_30C | 0.813829 | no |
| 3d_25C | 10d_25C | 0.046757 | yes |
| 5d_25C | 7d_25C | 0.460813 | no |
| 5d_25C | 7d_15C | 0.639853 | no |
| 5d_25C | 7d_30C | 0.705819 | no |
| 5d_25C | 10d_25C | 0.027948 | yes |
| 7d_25C | 7d_15C | 0.857680 | no |
| 7d_25C | 7d_30C | 0.803079 | no |
| 7d_25C | 10d_25C | 0.224179 | no |
| 7d_15C | 7d_30C | 0.953664 | no |
| 7d_15C | 10d_25C | 0.132161 | no |
| 7d_30C | 10d_25C | 0.116284 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7119.t1 MYILEQLARLLDRPLFPWKNVLVGFSVGQFVLEGFLSLRQYKFLQRTKPPQVLEGEVTQKVFDQSQAYGRAKAKF GFISGLYGQVQNLAFIYGDVLPKIWGLSGLVLARYLPGRFQGEICQTLVFFFGFNIISTILSLPISYYNTFVLEE KFGFNKQTVKLWITDMLKGQMLGIVLGTPIITAVLKIVQKFDTSFYYYLWLFGVFLQIFAITIYPIAILPLFNKL SPLQPGELKTGVENLAKRLNFPLSELHVIDGSKRSAHSNAYFYGLPWKKHIVIYDTLIEKTEPEEVVAVLGHELG HWSLSHTTKLFGIAQAHMFYIFALFSVFVNNKSLYQSFGFINEQPIMIGFLLFSDALAPMDAVVKLLMNILSRKF EFEADKFAQNLGYSDKLASSLLKLQIQNLSTMDADPIYASYHYSHPILTERLAALGWKGGKVTSNKEEDSEKPVK AADREL* |
| Coding | >Pro_DTO377G3_2|g7119.t1 ATGTATATCCTCGAGCAATTGGCGCGTTTGCTCGATCGCCCGCTCTTCCCATGGAAGAACGTGCTTGTGGGATTT TCAGTGGGCCAGTTCGTCCTTGAGGGTTTCCTGTCACTTCGGCAGTACAAGTTTTTGCAACGGACAAAGCCTCCC CAGGTCCTCGAAGGGGAGGTTACCCAGAAGGTCTTTGACCAGAGTCAGGCATACGGTCGCGCAAAGGCCAAGTTC GGCTTCATCTCTGGTCTTTACGGTCAAGTCCAAAACCTTGCTTTCATCTACGGCGATGTCCTCCCCAAGATCTGG GGCCTCAGCGGTCTGGTGCTGGCTCGGTATCTCCCCGGTCGGTTCCAAGGCGAAATTTGTCAGACATTGGTATTC TTCTTCGGTTTCAACATTATAAGCACTATCCTCTCGCTGCCCATCTCGTACTACAACACGTTTGTGCTTGAGGAG AAGTTCGGTTTCAACAAGCAGACGGTCAAGCTCTGGATTACGGATATGCTCAAGGGGCAGATGCTCGGAATTGTT CTGGGTACTCCTATTATCACTGCCGTTCTTAAGATTGTTCAGAAGTTTGACACCTCCTTCTACTACTACCTCTGG CTCTTCGGTGTCTTCCTCCAGATCTTCGCCATTACTATCTACCCCATTGCGATTCTGCCTCTGTTCAACAAGCTC TCGCCTCTTCAGCCCGGCGAACTCAAGACCGGTGTCGAGAACTTGGCTAAGAGACTCAACTTCCCTCTCTCCGAG CTCCATGTCATTGACGGCAGCAAGCGCAGTGCCCACAGCAATGCCTACTTCTATGGTCTGCCATGGAAGAAGCAC ATTGTCATCTACGATACTTTGATTGAGAAGACCGAGCCGGAGGAGGTTGTTGCTGTGCTTGGCCATGAGCTTGGC CACTGGAGCCTCAGCCACACCACCAAGCTCTTCGGCATTGCCCAGGCCCACATGTTCTACATTTTCGCTCTCTTC TCCGTCTTTGTCAACAACAAGTCGTTGTACCAGTCCTTCGGATTCATCAACGAACAGCCTATCATGATTGGTTTC CTGCTCTTCTCCGACGCCCTGGCTCCTATGGATGCTGTCGTGAAGCTTCTCATGAACATCCTCAGCCGAAAATTC GAATTTGAGGCCGATAAATTCGCCCAGAACCTCGGTTACTCTGACAAGCTCGCTTCCTCGCTACTGAAGCTCCAG ATCCAGAACTTGAGCACTATGGATGCCGATCCGATTTATGCTAGCTACCACTACTCCCACCCCATCCTCACCGAG CGTCTCGCTGCGCTTGGCTGGAAGGGTGGCAAGGTCACTAGCAACAAGGAGGAGGACAGTGAAAAGCCTGTCAAG GCCGCAGATCGCGAGCTGTAA |
| Transcript | >Pro_DTO377G3_2|g7119.t1 ATGTATATCCTCGAGCAATTGGCGCGTTTGCTCGATCGCCCGCTCTTCCCATGGAAGAACGTGCTTGTGGGATTT TCAGTGGGCCAGTTCGTCCTTGAGGGTTTCCTGTCACTTCGGCAGTACAAGTTTTTGCAACGGACAAAGCCTCCC CAGGTCCTCGAAGGGGAGGTTACCCAGAAGGTCTTTGACCAGAGTCAGGCATACGGTCGCGCAAAGGCCAAGTTC GGCTTCATCTCTGGTCTTTACGGTCAAGTCCAAAACCTTGCTTTCATCTACGGCGATGTCCTCCCCAAGATCTGG GGCCTCAGCGGTCTGGTGCTGGCTCGGTATCTCCCCGGTCGGTTCCAAGGCGAAATTTGTCAGACATTGGTATTC TTCTTCGGTTTCAACATTATAAGCACTATCCTCTCGCTGCCCATCTCGTACTACAACACGTTTGTGCTTGAGGAG AAGTTCGGTTTCAACAAGCAGACGGTCAAGCTCTGGATTACGGATATGCTCAAGGGGCAGATGCTCGGAATTGTT CTGGGTACTCCTATTATCACTGCCGTTCTTAAGATTGTTCAGAAGTTTGACACCTCCTTCTACTACTACCTCTGG CTCTTCGGTGTCTTCCTCCAGATCTTCGCCATTACTATCTACCCCATTGCGATTCTGCCTCTGTTCAACAAGCTC TCGCCTCTTCAGCCCGGCGAACTCAAGACCGGTGTCGAGAACTTGGCTAAGAGACTCAACTTCCCTCTCTCCGAG CTCCATGTCATTGACGGCAGCAAGCGCAGTGCCCACAGCAATGCCTACTTCTATGGTCTGCCATGGAAGAAGCAC ATTGTCATCTACGATACTTTGATTGAGAAGACCGAGCCGGAGGAGGTTGTTGCTGTGCTTGGCCATGAGCTTGGC CACTGGAGCCTCAGCCACACCACCAAGCTCTTCGGCATTGCCCAGGCCCACATGTTCTACATTTTCGCTCTCTTC TCCGTCTTTGTCAACAACAAGTCGTTGTACCAGTCCTTCGGATTCATCAACGAACAGCCTATCATGATTGGTTTC CTGCTCTTCTCCGACGCCCTGGCTCCTATGGATGCTGTCGTGAAGCTTCTCATGAACATCCTCAGCCGAAAATTC GAATTTGAGGCCGATAAATTCGCCCAGAACCTCGGTTACTCTGACAAGCTCGCTTCCTCGCTACTGAAGCTCCAG ATCCAGAACTTGAGCACTATGGATGCCGATCCGATTTATGCTAGCTACCACTACTCCCACCCCATCCTCACCGAG CGTCTCGCTGCGCTTGGCTGGAAGGGTGGCAAGGTCACTAGCAACAAGGAGGAGGACAGTGAAAAGCCTGTCAAG GCCGCAGATCGCGAGCTGTAA |
| Gene | >Pro_DTO377G3_2|g7119.t1 ATGTATATCCTCGAGGTAAGTTGATTTGATTGATACTATCATGTTTATACGGTAAATATGCTTTCCACCGTGGAC ACGTCGCTAATAACTGTCCTCCAGCAATTGGCGCGTTTGCTCGATCGCCCGCTCTTCCCATGGAAGAACGTGCTT GTGGGATTTTCAGTGGGCCAGTTCGTCCTTGAGGGTTTCCTGTCACTTCGGCAGTACAAGTTTTTGCAACGGACA AAGCCTCCCCAGGTCCTCGAAGGGGAGGTTACCCAGAAGGTCTTTGACCAGAGTCAGGTATGAACCCGATGACGG GGAATTATATCATATACAGAGGCTTACTGAAACATCACTACAGGCATACGGTCGCGCAAAGGCCAAGTTCGGCTT CATCTCTGGTCTTTACGGTCAAGTCCAAAACCTTGCTTTCATCTACGGCGATGTCCTCCCCAAGATCTGGGGCCT CAGCGGTCTGGTGCTGGCTCGGTATCTCCCCGGTCGGTTCCAAGGCGAAATTTGTCAGACATTGGTATTCTTCTT CGGTTTCAACATTATAAGCACTATCCTCTCGCTGCCCATCTCGTACTACAACACGTTTGTGCTTGAGGAGAAGTT CGGTTTCAACAAGCAGACGGTCAAGCTCTGGATTACGGATATGCTCAAGGGGCAGATGCTCGGAATTGTTCTGGG TACTCCTATTATCACTGCCGTTCTTAAGATTGTTCAGAAGTTTGACACCTCCTTCTACTACTACCTCTGGCTCTT CGGTGTCTTCCTCCAGATCTTCGCCATTACTATCTACCCCATTGCGATTCTGCCTCTGTTCAACAAGCTCTCGCC TCTTCAGCCCGGCGAACTCAAGACCGGTGTCGAGAACTTGGCTAAGAGACTCAACTTCCCTCTCTCCGAGCTCCA TGTCATTGACGGCAGCAAGCGCAGTGCCCACAGCAATGCCTACTTCTATGGTCTGCCATGGAAGAAGCACATTGT CATCTACGATACTTTGATTGAGAAGACCGAGCCGGAGGAGGTTGTTGCTGTGCTTGGCCATGAGCTTGGCCACTG GAGCCTCAGCCACACCACCAAGCTCTTCGGCATTGCCCAGGTACGAATTTGTTCAGTTGCTCTTTTGGCGAATTA TCACTAACTATGTAATCCAGGCCCACATGTTCTACATTTTCGCTCTCTTCTCCGTCTTTGTCAACAACAAGTCGT TGTACCAGTCCTTCGGATTCATCAACGAACAGCCTATCATGATTGGTTTCCTGCTCTTCTCCGACGCCCTGGCTC CTATGGATGCTGTCGTGAAGCTTCTCATGAACATCCTCAGCCGAAAATTCGAATTTGAGGCCGGTATGTTCCATT CGATCCATCACATTTACACTCGGTTTTACACTCGGTTTTACTAACAATGTTCCACAGATAAATTCGCCCAGAACC TCGGTTACTCTGACAAGCTCGCTTCCTCGCTACTGAAGCTCCAGATCCAGAACTTGAGCACTATGGATGCCGATC CGATTTATGCTAGCTACCACTACTCCCACCCCATCCTCACCGAGCGTCTCGCTGCGCTTGGCTGGAAGGGTGGCA AGGTCACTAGCAACAAGGAGGAGGACAGTGAAAAGCCTGTCAAGGCCGCAGATCGCGAGCTGTAA |