© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7101.t1 |
| Gene name | |
| Location | scaffold_21:56531..58244 |
| Strand | - |
| Gene length (bp) | 1713 |
| Transcript length (bp) | 1545 |
| Coding sequence length (bp) | 1545 |
| Protein length (aa) | 515 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00150 | Cellulase | Cellulase (glycosyl hydrolase family 5) | 4.6E-57 | 47 | 312 |
| PF00734 | CBM_1 | Fungal cellulose binding domain | 3.1E-13 | 483 | 510 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds | Yes |
| GO:0071704 | organic substance metabolic process | Yes |
| GO:0005576 | extracellular region | Yes |
| GO:0005975 | carbohydrate metabolic process | Yes |
| GO:0030248 | cellulose binding | Yes |
| GO:0008152 | metabolic process | No |
| GO:0005488 | binding | No |
| GO:0005575 | cellular_component | No |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds | No |
| GO:0044238 | primary metabolic process | No |
| GO:0030247 | polysaccharide binding | No |
| GO:0110165 | cellular anatomical entity | No |
| GO:0030246 | carbohydrate binding | No |
| GO:0003674 | molecular_function | No |
| GO:0003824 | catalytic activity | No |
| GO:0016787 | hydrolase activity | No |
| GO:0008150 | biological_process | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 71.16 | 42.05 | 100.27 |
| 5d_25C | Five days - 25 degrees Celsius | 48.70 | 27.52 | 69.88 |
| 7d_25C | Seven days - 25 degrees Celsius | 39.08 | 21.11 | 57.05 |
| 10d_25C | Ten days - 25 degrees Celsius | 23.11 | 11.23 | 34.99 |
| 7d_15C | Seven days - 15 degrees Celsius | 33.19 | 14.72 | 51.66 |
| 7d_30C | Seven days - 30 degrees Celsius | 43.76 | 23.20 | 64.31 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.096746 | no |
| 3d_25C | 7d_25C | 0.007091 | yes |
| 3d_25C | 7d_15C | 0.005626 | yes |
| 3d_25C | 7d_30C | 0.037779 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.431454 | no |
| 5d_25C | 7d_15C | 0.180281 | no |
| 5d_25C | 7d_30C | 0.744249 | no |
| 5d_25C | 10d_25C | 0.002297 | yes |
| 7d_25C | 7d_15C | 0.643295 | no |
| 7d_25C | 7d_30C | 0.735102 | no |
| 7d_25C | 10d_25C | 0.039155 | yes |
| 7d_15C | 7d_30C | 0.378894 | no |
| 7d_15C | 10d_25C | 0.246480 | no |
| 7d_30C | 10d_25C | 0.007779 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7101.t1 MKFTNIVLAASAATVACAYPRTRDVVPTRQSANIKKRANGFTWVGVNESGAEFASGSIPGTLNTDYTWPKTDQIQ ILRDAGMNIFRVPFLMERLVPSSMTGTADATYLAALKTTVQFITDSGAYAIIDPHNYGRYSGNIITSTSDFGAFW KTVAAEFATNEKVIFDTNNEYHGLDQTLVLDLNQAAINAIRAAGATSQYIFVEGNAWSGAYSWVATNDNLKALTD SADKIVYEMHQYLDSDSSGTSETCVSTTIGKERLESATTWLQDNNKKGFIGEFAGGVNSDCETAVEGMLSYMSDN SDVWVGASWWSAGPWWGSYMYNLEPSNGPAYATYLPILEKYFVDGTASAVTSSSSSSSSTSTTAAQTSSTKTAAQ TSATTTAQTSTSTKNAVQTSTTTAAQTSSTTTAAAQVPTSVTSSSSTTTAPAASAPTTTTTVVVPSTLVTLTSTV TSTTTAATSTTTATAYAQVPTSGSSTVNIAKHYYQCGGINWTGATACESGTTCVKQNPYYSQCL* |
| Coding | >Pro_DTO377G3_2|g7101.t1 ATGAAGTTCACTAACATTGTCCTGGCTGCCAGCGCCGCAACTGTGGCCTGCGCATACCCCCGAACAAGAGACGTT GTTCCTACCAGGCAGAGCGCTAATATCAAGAAGCGCGCCAATGGATTCACTTGGGTCGGCGTGAACGAGTCCGGT GCTGAATTTGCCTCGGGCAGCATCCCCGGTACTCTGAACACAGACTACACCTGGCCCAAGACTGATCAGATTCAG ATCCTGCGAGATGCGGGCATGAACATCTTCCGTGTGCCCTTCTTGATGGAGCGCCTGGTGCCATCCAGCATGACC GGCACCGCGGATGCTACTTACCTGGCCGCTCTTAAGACTACTGTCCAGTTCATTACCGACAGCGGTGCCTATGCC ATCATTGACCCCCACAACTACGGAAGATACTCTGGCAATATCATCACCTCGACCTCTGATTTCGGCGCCTTCTGG AAGACCGTTGCTGCTGAGTTCGCCACTAACGAGAAGGTCATCTTCGATACCAACAACGAGTACCACGGCCTTGAT CAGACTCTCGTTCTGGACCTGAACCAGGCCGCTATTAACGCTATCCGTGCCGCTGGTGCCACCAGCCAGTACATC TTCGTTGAAGGTAACGCATGGAGCGGCGCCTATTCCTGGGTCGCCACCAACGACAACCTGAAGGCCCTTACCGAC TCCGCGGACAAGATCGTCTACGAGATGCACCAGTACCTGGACAGCGACAGCTCCGGTACCTCCGAGACCTGTGTC AGCACCACCATCGGTAAGGAGCGTCTCGAGTCCGCCACCACCTGGTTGCAGGACAACAACAAGAAGGGCTTCATC GGCGAGTTCGCCGGTGGCGTCAACAGCGACTGCGAGACTGCCGTCGAGGGCATGCTCTCCTACATGTCCGACAAC AGCGACGTCTGGGTCGGCGCCTCGTGGTGGTCTGCCGGTCCCTGGTGGGGATCTTACATGTACAACTTGGAGCCC AGCAATGGCCCTGCTTACGCGACTTACCTGCCCATCCTCGAGAAGTACTTCGTGGACGGCACTGCCTCAGCCGTG ACCTCCTCGTCTTCCTCTTCTTCATCCACCTCCACCACCGCTGCCCAGACATCCTCTACTAAGACCGCCGCTCAG ACATCCGCTACTACCACTGCGCAGACATCTACATCCACCAAGAACGCCGTTCAGACATCCACCACCACCGCTGCC CAGACGTCCAGCACCACTACCGCTGCCGCCCAGGTCCCCACCTCGGTGACCTCGTCTTCCTCGACCACCACAGCT CCCGCAGCGTCAGCTCCCACGACCACCACCACGGTTGTCGTCCCGTCCACCCTCGTCACCCTCACCTCCACCGTG ACCTCGACCACCACCGCCGCCACCTCCACCACGACCGCTACGGCATATGCTCAGGTACCTACCAGCGGCTCCTCT ACTGTGAACATTGCTAAGCACTATTACCAGTGCGGTGGCATCAACTGGACCGGCGCCACTGCTTGCGAGAGCGGC ACCACTTGCGTCAAGCAGAACCCTTACTATTCCCAGTGTCTTTAA |
| Transcript | >Pro_DTO377G3_2|g7101.t1 ATGAAGTTCACTAACATTGTCCTGGCTGCCAGCGCCGCAACTGTGGCCTGCGCATACCCCCGAACAAGAGACGTT GTTCCTACCAGGCAGAGCGCTAATATCAAGAAGCGCGCCAATGGATTCACTTGGGTCGGCGTGAACGAGTCCGGT GCTGAATTTGCCTCGGGCAGCATCCCCGGTACTCTGAACACAGACTACACCTGGCCCAAGACTGATCAGATTCAG ATCCTGCGAGATGCGGGCATGAACATCTTCCGTGTGCCCTTCTTGATGGAGCGCCTGGTGCCATCCAGCATGACC GGCACCGCGGATGCTACTTACCTGGCCGCTCTTAAGACTACTGTCCAGTTCATTACCGACAGCGGTGCCTATGCC ATCATTGACCCCCACAACTACGGAAGATACTCTGGCAATATCATCACCTCGACCTCTGATTTCGGCGCCTTCTGG AAGACCGTTGCTGCTGAGTTCGCCACTAACGAGAAGGTCATCTTCGATACCAACAACGAGTACCACGGCCTTGAT CAGACTCTCGTTCTGGACCTGAACCAGGCCGCTATTAACGCTATCCGTGCCGCTGGTGCCACCAGCCAGTACATC TTCGTTGAAGGTAACGCATGGAGCGGCGCCTATTCCTGGGTCGCCACCAACGACAACCTGAAGGCCCTTACCGAC TCCGCGGACAAGATCGTCTACGAGATGCACCAGTACCTGGACAGCGACAGCTCCGGTACCTCCGAGACCTGTGTC AGCACCACCATCGGTAAGGAGCGTCTCGAGTCCGCCACCACCTGGTTGCAGGACAACAACAAGAAGGGCTTCATC GGCGAGTTCGCCGGTGGCGTCAACAGCGACTGCGAGACTGCCGTCGAGGGCATGCTCTCCTACATGTCCGACAAC AGCGACGTCTGGGTCGGCGCCTCGTGGTGGTCTGCCGGTCCCTGGTGGGGATCTTACATGTACAACTTGGAGCCC AGCAATGGCCCTGCTTACGCGACTTACCTGCCCATCCTCGAGAAGTACTTCGTGGACGGCACTGCCTCAGCCGTG ACCTCCTCGTCTTCCTCTTCTTCATCCACCTCCACCACCGCTGCCCAGACATCCTCTACTAAGACCGCCGCTCAG ACATCCGCTACTACCACTGCGCAGACATCTACATCCACCAAGAACGCCGTTCAGACATCCACCACCACCGCTGCC CAGACGTCCAGCACCACTACCGCTGCCGCCCAGGTCCCCACCTCGGTGACCTCGTCTTCCTCGACCACCACAGCT CCCGCAGCGTCAGCTCCCACGACCACCACCACGGTTGTCGTCCCGTCCACCCTCGTCACCCTCACCTCCACCGTG ACCTCGACCACCACCGCCGCCACCTCCACCACGACCGCTACGGCATATGCTCAGGTACCTACCAGCGGCTCCTCT ACTGTGAACATTGCTAAGCACTATTACCAGTGCGGTGGCATCAACTGGACCGGCGCCACTGCTTGCGAGAGCGGC ACCACTTGCGTCAAGCAGAACCCTTACTATTCCCAGTGTCTTTAA |
| Gene | >Pro_DTO377G3_2|g7101.t1 ATGAAGTTCACTAACATTGTCCTGGCTGCCAGCGCCGCAACTGTGGCCTGCGCATACCCCCGAACAAGAGACGTT GTTCCTACCAGGCAGAGCGCTAATATCAAGAAGCGCGCCAATGGATTCACTTGGGTCGGCGTGAACGAGTCCGGT GCTGAATTTGCCTCGGGCAGCATCCCCGGTACTCTGAACACAGACTACACCTGGCCCAAGACTGATCAGATTCAG ATCCTGCGAGATGCGGGCATGAACATCTTCCGTGTGCCCTTCTTGATGGAGCGCCTGGTGCCATCCAGCATGACC GGCACCGCGGATGCTACTTACCTGGCCGCTCTTAAGACTGTACGTGATGTCTGTCGTAGTTGATTCTCTTCCAGA TCTAACAGTTCTATTATGTAGACTGTCCAGTTCATTACCGACAGCGGTGCCTATGCCATCATTGACCCCCACAAC TACGGAAGATAGTAAGTGTATAAAACTAGAACCCACCGTGATGTATGATACTAATTGCTCATTTACAGCTCTGGC AATATCATCACCTCGACCTCTGATTTCGGCGCCTTCTGGAAGACCGTTGCTGCTGAGTTCGCCACTAACGAGAAG GTCATCTTCGATACCAGTAAGTCACCTAGAGGCACCCATACCATGGTAATAATCCACTAATATCATTTAGACAAC GAGTACCACGGCCTTGATCAGACTCTCGTTCTGGACCTGAACCAGGCCGCTATTAACGCTATCCGTGCCGCTGGT GCCACCAGCCAGTACATCTTCGTTGAAGGTAACGCATGGAGCGGCGCCTATTCCTGGGTCGCCACCAACGACAAC CTGAAGGCCCTTACCGACTCCGCGGACAAGATCGTCTACGAGATGCACCAGTACCTGGACAGCGACAGCTCCGGT ACCTCCGAGACCTGTGTCAGCACCACCATCGGTAAGGAGCGTCTCGAGTCCGCCACCACCTGGTTGCAGGACAAC AACAAGAAGGGCTTCATCGGCGAGTTCGCCGGTGGCGTCAACAGCGACTGCGAGACTGCCGTCGAGGGCATGCTC TCCTACATGTCCGACAACAGCGACGTCTGGGTCGGCGCCTCGTGGTGGTCTGCCGGTCCCTGGTGGGGATCTTAC ATGTACAACTTGGAGCCCAGCAATGGCCCTGCTTACGCGACTTACCTGCCCATCCTCGAGAAGTACTTCGTGGAC GGCACTGCCTCAGCCGTGACCTCCTCGTCTTCCTCTTCTTCATCCACCTCCACCACCGCTGCCCAGACATCCTCT ACTAAGACCGCCGCTCAGACATCCGCTACTACCACTGCGCAGACATCTACATCCACCAAGAACGCCGTTCAGACA TCCACCACCACCGCTGCCCAGACGTCCAGCACCACTACCGCTGCCGCCCAGGTCCCCACCTCGGTGACCTCGTCT TCCTCGACCACCACAGCTCCCGCAGCGTCAGCTCCCACGACCACCACCACGGTTGTCGTCCCGTCCACCCTCGTC ACCCTCACCTCCACCGTGACCTCGACCACCACCGCCGCCACCTCCACCACGACCGCTACGGCATATGCTCAGGTA CCTACCAGCGGCTCCTCTACTGTGAACATTGCTAAGCACTATTACCAGTGCGGTGGCATCAACTGGACCGGCGCC ACTGCTTGCGAGAGCGGCACCACTTGCGTCAAGCAGAACCCTTACTATTCCCAGTGTCTTTAA |