© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7080.t1 |
| Gene name | |
| Location | scaffold_21:11139..12108 |
| Strand | - |
| Gene length (bp) | 969 |
| Transcript length (bp) | 969 |
| Coding sequence length (bp) | 969 |
| Protein length (aa) | 323 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF02567 | PhzC-PhzF | Phenazine biosynthesis-like protein | 3.6E-10 | 34 | 204 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0003824 | catalytic activity | Yes |
| GO:0009058 | biosynthetic process | Yes |
| GO:0008150 | biological_process | No |
| GO:0008152 | metabolic process | No |
| GO:0003674 | molecular_function | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 77.79 | 46.40 | 109.18 |
| 5d_25C | Five days - 25 degrees Celsius | 354.75 | 206.71 | 502.78 |
| 7d_25C | Seven days - 25 degrees Celsius | 461.67 | 269.58 | 653.76 |
| 10d_25C | Ten days - 25 degrees Celsius | 1091.53 | 587.57 | 1595.50 |
| 7d_15C | Seven days - 15 degrees Celsius | 207.03 | 120.82 | 293.25 |
| 7d_30C | Seven days - 30 degrees Celsius | 440.21 | 248.74 | 631.68 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 0.000700 | yes |
| 3d_25C | 7d_25C | 0.000700 | yes |
| 3d_25C | 7d_15C | 0.000700 | yes |
| 3d_25C | 7d_30C | 0.000700 | yes |
| 3d_25C | 10d_25C | 0.000700 | yes |
| 5d_25C | 7d_25C | 0.281027 | no |
| 5d_25C | 7d_15C | 0.011688 | yes |
| 5d_25C | 7d_30C | 0.419820 | no |
| 5d_25C | 10d_25C | 0.000700 | yes |
| 7d_25C | 7d_15C | 0.000700 | yes |
| 7d_25C | 7d_30C | 0.895315 | no |
| 7d_25C | 10d_25C | 0.000700 | yes |
| 7d_15C | 7d_30C | 0.000700 | yes |
| 7d_15C | 10d_25C | 0.000700 | yes |
| 7d_30C | 10d_25C | 0.000700 | yes |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7080.t1 MEATSSLPHPSVIENVQAHILRVSPAGPDGKGIISVVLNANGLSDEEMQKLTTNYGHPSGFVFSAPADSDLDYEI RVWHPDHELEKCAHVMIGTVWLLSKLGMMPRGDLRILTKSDCVEAKITKTTDKDNAKENIWVEFFNLACDMNTVN TENMDVILSDLKISRSDIAPGMVHNAGTVDDADTDIISTTLIPIRSVRRLRDLKLSDDLVKKLLERIQSPGLCLY AIVDEIRQEYEVRQVPEPDANWEDTTTALAFALLINGFVDRPVEPLQIREPCDNDRYREINLRFRLGGGNASGCW IGGTAEFETEEKETGQTKTDAE* |
| Coding | >Pro_DTO377G3_2|g7080.t1 ATGGAGGCGACATCATCTCTACCACATCCATCTGTAATAGAGAATGTCCAAGCCCACATTCTACGGGTCTCTCCT GCAGGTCCAGACGGCAAGGGTATAATTTCAGTTGTCCTAAATGCCAATGGCCTGTCCGACGAAGAAATGCAAAAA CTTACCACAAATTACGGCCACCCGAGCGGGTTCGTCTTCTCCGCACCAGCAGACTCCGACTTGGACTATGAGATC CGCGTCTGGCACCCAGACCATGAACTAGAGAAGTGTGCTCATGTAATGATCGGAACCGTGTGGCTACTCTCGAAG CTTGGGATGATGCCGCGGGGCGACCTCCGCATCTTGACCAAGAGCGACTGTGTGGAAGCAAAGATCACGAAGACC ACCGACAAAGACAACGCCAAGGAGAACATCTGGGTTGAGTTCTTCAACCTGGCATGTGACATGAACACTGTGAAT ACCGAAAACATGGATGTCATTCTGTCCGATTTGAAGATTTCGAGATCTGACATTGCACCTGGAATGGTCCACAAT GCTGGCACGGTCGACGATGCTGACACGGACATAATCTCAACGACACTGATTCCGATCAGATCGGTTAGGAGATTG CGTGACTTGAAGCTGAGCGATGATCTCGTCAAGAAGCTTCTTGAAAGGATTCAGAGCCCTGGATTGTGTCTGTAT GCCATCGTCGACGAAATACGGCAGGAGTACGAAGTGAGACAGGTTCCTGAACCTGATGCGAATTGGGAGGACACC ACGACTGCTTTGGCTTTTGCGCTTTTGATAAATGGCTTTGTCGACAGACCTGTTGAGCCACTTCAGATCAGGGAG CCTTGCGACAACGACCGTTACCGTGAGATTAATTTGAGGTTCAGGCTTGGGGGTGGCAATGCCAGTGGCTGTTGG ATTGGAGGTACAGCCGAGTTTGAAACCGAGGAGAAAGAGACTGGACAGACAAAGACCGATGCTGAATAG |
| Transcript | >Pro_DTO377G3_2|g7080.t1 ATGGAGGCGACATCATCTCTACCACATCCATCTGTAATAGAGAATGTCCAAGCCCACATTCTACGGGTCTCTCCT GCAGGTCCAGACGGCAAGGGTATAATTTCAGTTGTCCTAAATGCCAATGGCCTGTCCGACGAAGAAATGCAAAAA CTTACCACAAATTACGGCCACCCGAGCGGGTTCGTCTTCTCCGCACCAGCAGACTCCGACTTGGACTATGAGATC CGCGTCTGGCACCCAGACCATGAACTAGAGAAGTGTGCTCATGTAATGATCGGAACCGTGTGGCTACTCTCGAAG CTTGGGATGATGCCGCGGGGCGACCTCCGCATCTTGACCAAGAGCGACTGTGTGGAAGCAAAGATCACGAAGACC ACCGACAAAGACAACGCCAAGGAGAACATCTGGGTTGAGTTCTTCAACCTGGCATGTGACATGAACACTGTGAAT ACCGAAAACATGGATGTCATTCTGTCCGATTTGAAGATTTCGAGATCTGACATTGCACCTGGAATGGTCCACAAT GCTGGCACGGTCGACGATGCTGACACGGACATAATCTCAACGACACTGATTCCGATCAGATCGGTTAGGAGATTG CGTGACTTGAAGCTGAGCGATGATCTCGTCAAGAAGCTTCTTGAAAGGATTCAGAGCCCTGGATTGTGTCTGTAT GCCATCGTCGACGAAATACGGCAGGAGTACGAAGTGAGACAGGTTCCTGAACCTGATGCGAATTGGGAGGACACC ACGACTGCTTTGGCTTTTGCGCTTTTGATAAATGGCTTTGTCGACAGACCTGTTGAGCCACTTCAGATCAGGGAG CCTTGCGACAACGACCGTTACCGTGAGATTAATTTGAGGTTCAGGCTTGGGGGTGGCAATGCCAGTGGCTGTTGG ATTGGAGGTACAGCCGAGTTTGAAACCGAGGAGAAAGAGACTGGACAGACAAAGACCGATGCTGAATAG |
| Gene | >Pro_DTO377G3_2|g7080.t1 ATGGAGGCGACATCATCTCTACCACATCCATCTGTAATAGAGAATGTCCAAGCCCACATTCTACGGGTCTCTCCT GCAGGTCCAGACGGCAAGGGTATAATTTCAGTTGTCCTAAATGCCAATGGCCTGTCCGACGAAGAAATGCAAAAA CTTACCACAAATTACGGCCACCCGAGCGGGTTCGTCTTCTCCGCACCAGCAGACTCCGACTTGGACTATGAGATC CGCGTCTGGCACCCAGACCATGAACTAGAGAAGTGTGCTCATGTAATGATCGGAACCGTGTGGCTACTCTCGAAG CTTGGGATGATGCCGCGGGGCGACCTCCGCATCTTGACCAAGAGCGACTGTGTGGAAGCAAAGATCACGAAGACC ACCGACAAAGACAACGCCAAGGAGAACATCTGGGTTGAGTTCTTCAACCTGGCATGTGACATGAACACTGTGAAT ACCGAAAACATGGATGTCATTCTGTCCGATTTGAAGATTTCGAGATCTGACATTGCACCTGGAATGGTCCACAAT GCTGGCACGGTCGACGATGCTGACACGGACATAATCTCAACGACACTGATTCCGATCAGATCGGTTAGGAGATTG CGTGACTTGAAGCTGAGCGATGATCTCGTCAAGAAGCTTCTTGAAAGGATTCAGAGCCCTGGATTGTGTCTGTAT GCCATCGTCGACGAAATACGGCAGGAGTACGAAGTGAGACAGGTTCCTGAACCTGATGCGAATTGGGAGGACACC ACGACTGCTTTGGCTTTTGCGCTTTTGATAAATGGCTTTGTCGACAGACCTGTTGAGCCACTTCAGATCAGGGAG CCTTGCGACAACGACCGTTACCGTGAGATTAATTTGAGGTTCAGGCTTGGGGGTGGCAATGCCAGTGGCTGTTGG ATTGGAGGTACAGCCGAGTTTGAAACCGAGGAGAAAGAGACTGGACAGACAAAGACCGATGCTGAATAG |