© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7075.t1 |
| Gene name | |
| Location | scaffold_20:406239..407145 |
| Strand | - |
| Gene length (bp) | 906 |
| Transcript length (bp) | 726 |
| Coding sequence length (bp) | 726 |
| Protein length (aa) | 242 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00657 | Lipase_GDSL | GDSL-like Lipase/Acylhydrolase | 4.5E-12 | 38 | 225 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0016788 | hydrolase activity, acting on ester bonds | Yes |
| GO:0003824 | catalytic activity | No |
| GO:0003674 | molecular_function | No |
| GO:0016787 | hydrolase activity | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| Yes | 1 - 19 | 0.45 |
Expression values
| Label | Description | Expression (RPKM) | Confidence interval (low) | Confidence interval (high) |
|---|---|---|---|---|
| 3d_25C | Three days - 25 degrees Celsius | 0.16 | 0.0 | 0.49 |
| 5d_25C | Five days - 25 degrees Celsius | 0.12 | 0.0 | 0.46 |
| 7d_25C | Seven days - 25 degrees Celsius | 0.32 | 0.0 | 0.85 |
| 10d_25C | Ten days - 25 degrees Celsius | 0.24 | 0.0 | 0.68 |
| 7d_15C | Seven days - 15 degrees Celsius | 0.10 | 0.0 | 0.40 |
| 7d_30C | Seven days - 30 degrees Celsius | 1.25 | 0.0 | 2.66 |
Differential expression
| Label1 | Label2 | Q-value | Significant difference |
|---|---|---|---|
| 3d_25C | 5d_25C | 1.000000 | no |
| 3d_25C | 7d_25C | 1.000000 | no |
| 3d_25C | 7d_15C | 1.000000 | no |
| 3d_25C | 7d_30C | 0.188553 | no |
| 3d_25C | 10d_25C | 1.000000 | no |
| 5d_25C | 7d_25C | 1.000000 | no |
| 5d_25C | 7d_15C | 1.000000 | no |
| 5d_25C | 7d_30C | 0.258601 | no |
| 5d_25C | 10d_25C | 1.000000 | no |
| 7d_25C | 7d_15C | 1.000000 | no |
| 7d_25C | 7d_30C | 0.224627 | no |
| 7d_25C | 10d_25C | 1.000000 | no |
| 7d_15C | 7d_30C | 0.327237 | no |
| 7d_15C | 10d_25C | 1.000000 | no |
| 7d_30C | 10d_25C | 0.223614 | no |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7075.t1 MIILTICVLAIAFGTIFARASPLSRPAKLNWSSTKALIAFGDSYTYVQGTIGHQNFSFIGDQFNLAYDAEALLSN KIVQNQTATAEGGPNWVEYLTNCGIHQGLTSPQDCKKQLWDFAFAGADISTEYTPPHHNFTVSLLDQINQFKQYG HPALLNSLPSFTQDKTLVAIWIGINDINDSAKYVVNFPTFYKSLIDTLFTSVEILYNLGYRNYLFMNLPPLDRTP GNQATKDPSPNSGRVV* |
| Coding | >Pro_DTO377G3_2|g7075.t1 ATGATTATCCTGACGATATGCGTCCTAGCCATCGCCTTTGGCACTATTTTCGCCAGAGCAAGTCCTCTGTCAAGA CCCGCCAAACTCAACTGGTCATCGACTAAGGCTCTAATCGCCTTTGGTGACTCCTACACCTATGTCCAGGGAACC ATCGGACACCAAAATTTCAGTTTCATTGGCGACCAATTCAACCTCGCATATGATGCCGAAGCCCTGCTTTCCAAC AAGATAGTCCAAAATCAAACCGCAACCGCAGAAGGCGGTCCGAACTGGGTCGAATATCTCACAAACTGCGGCATC CACCAAGGCCTCACCTCTCCACAAGACTGCAAAAAGCAACTCTGGGATTTCGCCTTTGCAGGCGCCGATATATCA ACCGAGTACACACCACCACACCACAACTTCACAGTCTCCCTCCTAGACCAGATAAACCAATTCAAGCAATATGGC CACCCAGCCCTCCTAAACAGTCTACCAAGCTTCACCCAAGACAAAACCCTAGTCGCCATCTGGATCGGCATCAAC GACATAAACGACAGCGCCAAGTACGTCGTGAACTTCCCAACCTTCTACAAAAGCCTCATAGACACACTCTTCACA TCAGTGGAAATCCTCTATAACCTGGGCTACAGAAACTATCTCTTCATGAACCTGCCGCCGCTAGACCGCACGCCA GGGAACCAAGCAACGAAGGATCCGAGTCCGAATTCAGGTCGGGTGGTATAA |
| Transcript | >Pro_DTO377G3_2|g7075.t1 ATGATTATCCTGACGATATGCGTCCTAGCCATCGCCTTTGGCACTATTTTCGCCAGAGCAAGTCCTCTGTCAAGA CCCGCCAAACTCAACTGGTCATCGACTAAGGCTCTAATCGCCTTTGGTGACTCCTACACCTATGTCCAGGGAACC ATCGGACACCAAAATTTCAGTTTCATTGGCGACCAATTCAACCTCGCATATGATGCCGAAGCCCTGCTTTCCAAC AAGATAGTCCAAAATCAAACCGCAACCGCAGAAGGCGGTCCGAACTGGGTCGAATATCTCACAAACTGCGGCATC CACCAAGGCCTCACCTCTCCACAAGACTGCAAAAAGCAACTCTGGGATTTCGCCTTTGCAGGCGCCGATATATCA ACCGAGTACACACCACCACACCACAACTTCACAGTCTCCCTCCTAGACCAGATAAACCAATTCAAGCAATATGGC CACCCAGCCCTCCTAAACAGTCTACCAAGCTTCACCCAAGACAAAACCCTAGTCGCCATCTGGATCGGCATCAAC GACATAAACGACAGCGCCAAGTACGTCGTGAACTTCCCAACCTTCTACAAAAGCCTCATAGACACACTCTTCACA TCAGTGGAAATCCTCTATAACCTGGGCTACAGAAACTATCTCTTCATGAACCTGCCGCCGCTAGACCGCACGCCA GGGAACCAAGCAACGAAGGATCCGAGTCCGAATTCAGGTCGGGTGGTATAA |
| Gene | >Pro_DTO377G3_2|g7075.t1 ATGATTATCCTGACGATATGCGTCCTAGCCATCGCCTTTGGCACTATTTTCGCCAGAGCAAGTCCTCTGTCAAGA CCCGCCAAACTCAACTGGTCATCGACTAAGGCTCTGTGAGTATATCTAGCCTAAATCTTGCAAGCAGCACTGACC CCAGACCAAAGAATCGCCTTTGGTGACTCCTACACCTATGTCCAGGGAACCATCGGACACCAAAATTTCAGTTTC ATTGGCGACCAATTCAACCTCGCATATGATGCCGAAGCCCTGCTTTCCAACAAGATAGTCCAAAATCAAGTAAGC TTATATCTTGACACGATTGAATCAAACACAGCACCACTCGGATATTAACGTCCCACGTCTAGACCGCAACCGCAG AAGGCGGTCCGAACTGGGTCGAATATCTCACAAACTGCGGCATCCACCAAGGCCTCACCTCTCCACAAGACTGCA AAAAGCAACTCTGGGATTTCGCCTTTGCAGGCGCCGATATATCAACCGAGTAGTAAGTACAAGCACAAGTACAAT CAACACACATTTTCGAGCAAACTCAACTAAAAACCAAGCACACCACCACACCACAACTTCACAGTCTCCCTCCTA GACCAGATAAACCAATTCAAGCAATATGGCCACCCAGCCCTCCTAAACAGTCTACCAAGCTTCACCCAAGACAAA ACCCTAGTCGCCATCTGGATCGGCATCAACGACATAAACGACAGCGCCAAGTACGTCGTGAACTTCCCAACCTTC TACAAAAGCCTCATAGACACACTCTTCACATCAGTGGAAATCCTCTATAACCTGGGCTACAGAAACTATCTCTTC ATGAACCTGCCGCCGCTAGACCGCACGCCAGGGAACCAAGCAACGAAGGATCCGAGTCCGAATTCAGGTCGGGTG GTATAA |