© 2022 - Robin Ohm - Utrecht University - The Netherlands
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| Protein ID | Pro_DTO377G3_2|g7073.t1 |
| Gene name | |
| Location | scaffold_20:402920..404636 |
| Strand | + |
| Gene length (bp) | 1716 |
| Transcript length (bp) | 1401 |
| Coding sequence length (bp) | 1401 |
| Protein length (aa) | 467 |
| PFAM Domain ID | Short name | Long name | E-value | Start | End |
|---|---|---|---|---|---|
| PF00270 | DEAD | DEAD/DEAH box helicase | 3.1E-48 | 160 | 331 |
| PF00271 | Helicase_C | Helicase conserved C-terminal domain | 1.1E-14 | 372 | 452 |
| GO Term | Description | Terminal node |
|---|---|---|
| GO:0005524 | ATP binding | Yes |
| GO:0003676 | nucleic acid binding | Yes |
| GO:0000166 | nucleotide binding | No |
| GO:0008144 | drug binding | No |
| GO:0003674 | molecular_function | No |
| GO:0043167 | ion binding | No |
| GO:0032553 | ribonucleotide binding | No |
| GO:0017076 | purine nucleotide binding | No |
| GO:0035639 | purine ribonucleoside triphosphate binding | No |
| GO:0097367 | carbohydrate derivative binding | No |
| GO:0030554 | adenyl nucleotide binding | No |
| GO:1901265 | nucleoside phosphate binding | No |
| GO:0005488 | binding | No |
| GO:1901363 | heterocyclic compound binding | No |
| GO:0032559 | adenyl ribonucleotide binding | No |
| GO:0043168 | anion binding | No |
| GO:0032555 | purine ribonucleotide binding | No |
| GO:0036094 | small molecule binding | No |
| GO:0097159 | organic cyclic compound binding | No |
| SignalP signal predicted | Location (based on Ymax) |
D score (significance: > 0.45) |
|---|---|---|
| No | 1 - 22 | 0.45 |
| Type of sequence | Sequence |
|---|---|
| Locus | Download genbank file of locus
The gene with 5 kb flanks (if sufficient flanking sequence is available). For use in cloning design programs. NOTE: features (genes or exons) that are only partially contained within the sequence are completely excluded. |
| Protein | >Pro_DTO377G3_2|g7073.t1 MSYGGGYSRGGGGGGDSYRSRGGDSGYSNGGSGGGGYSGGGGGYGGGRGGGYSGGGGYGGGGGGGYGGGAAGGDR MNNLGAGLKTQDWDPNTMPKFEKSFYKEHPDVTARSEEDIIAFRKEKEMAIQGTNVPRPVETFDEAGFPAYVLSE VKAQGFDAPTAIQSQGWPMALSGRDVVGIAETGSGKTLSYCLPAIVHINAQPLLAPGDGPIVLVLAPTRELAVQI QAEITKFGKSSRIRNTCVYGGVPKGPQIRDLSRGVEVCIATPGRLIDMLEAGRTNLRRVTYLVLDEADRMLDMGF EPQIRKIIGQIRPDRQTCMWSATWPKDVRQLASDFLNDYIQVNVGSTDLSANHRITQIVEVVSDFEKRDKMIKHL EKIMEDRSNKCIIFTGTKRVADEITRFLRQDGWPALSIHGDKQQNERDWVLNEFKQGKSPIMVATDVASRGIGMN KLHPSPLFPSPLLVPP* |
| Coding | >Pro_DTO377G3_2|g7073.t1 ATGTCGTACGGAGGTGGCTACTCTCGCGGTGGCGGCGGCGGCGGTGACTCCTACCGCTCTCGCGGAGGTGACAGC GGCTACTCTAACGGTGGCTCCGGTGGTGGTGGTTACAGCGGCGGCGGTGGTGGTTACGGCGGTGGCCGTGGAGGT GGTTACAGCGGTGGCGGCGGCTACGGTGGTGGTGGTGGTGGTGGTTACGGCGGCGGTGCTGCCGGTGGTGACCGC ATGAACAACCTCGGCGCCGGCCTGAAGACTCAGGACTGGGATCCCAACACCATGCCCAAGTTTGAGAAGTCATTC TACAAGGAGCACCCCGATGTCACTGCGCGCTCGGAGGAAGACATTATCGCCTTCCGCAAGGAGAAGGAGATGGCT ATTCAGGGTACCAATGTGCCCCGTCCCGTTGAAACCTTCGACGAGGCTGGTTTCCCCGCGTACGTTTTGTCTGAG GTCAAGGCTCAGGGCTTTGACGCTCCTACTGCTATCCAGTCCCAGGGCTGGCCCATGGCTCTGTCCGGACGCGAT GTCGTCGGTATTGCCGAGACTGGTTCCGGCAAGACTCTGAGTTACTGTCTCCCCGCTATTGTTCACATCAACGCT CAGCCTCTCCTCGCCCCCGGCGATGGACCCATTGTTTTGGTCTTGGCTCCTACTCGTGAGTTGGCTGTCCAGATT CAGGCTGAGATTACCAAGTTCGGAAAGTCCTCCCGTATTCGCAACACCTGTGTCTACGGTGGTGTCCCCAAGGGT CCTCAGATTCGTGACCTCTCCCGCGGTGTTGAGGTTTGCATTGCCACCCCCGGTCGCCTGATTGATATGCTCGAG GCTGGCCGTACCAACCTTCGTCGCGTCACTTACCTCGTTCTTGACGAGGCTGATCGTATGCTTGATATGGGTTTC GAACCCCAGATTCGCAAGATCATCGGCCAAATTCGCCCTGATCGTCAGACTTGCATGTGGTCCGCTACCTGGCCC AAGGATGTCCGTCAGCTCGCTTCTGATTTCCTCAACGACTACATTCAAGTCAACGTCGGCTCCACAGATCTCTCC GCCAACCACCGCATCACCCAGATTGTCGAGGTCGTCTCGGACTTTGAGAAGCGTGACAAGATGATCAAGCATCTT GAGAAGATTATGGAGGACCGCTCCAATAAGTGCATCATTTTCACAGGTACCAAGCGTGTCGCAGATGAGATTACC CGATTCCTCCGTCAGGACGGCTGGCCCGCGCTTTCCATCCACGGTGACAAGCAGCAGAACGAGCGTGACTGGGTC TTGAACGAGTTCAAGCAAGGCAAAAGCCCCATCATGGTGGCCACCGACGTGGCCTCGCGTGGTATTGGTATGAAC AAACTACACCCCTCCCCCCTCTTCCCCTCCCCCCTTCTTGTCCCCCCTTAA |
| Transcript | >Pro_DTO377G3_2|g7073.t1 ATGTCGTACGGAGGTGGCTACTCTCGCGGTGGCGGCGGCGGCGGTGACTCCTACCGCTCTCGCGGAGGTGACAGC GGCTACTCTAACGGTGGCTCCGGTGGTGGTGGTTACAGCGGCGGCGGTGGTGGTTACGGCGGTGGCCGTGGAGGT GGTTACAGCGGTGGCGGCGGCTACGGTGGTGGTGGTGGTGGTGGTTACGGCGGCGGTGCTGCCGGTGGTGACCGC ATGAACAACCTCGGCGCCGGCCTGAAGACTCAGGACTGGGATCCCAACACCATGCCCAAGTTTGAGAAGTCATTC TACAAGGAGCACCCCGATGTCACTGCGCGCTCGGAGGAAGACATTATCGCCTTCCGCAAGGAGAAGGAGATGGCT ATTCAGGGTACCAATGTGCCCCGTCCCGTTGAAACCTTCGACGAGGCTGGTTTCCCCGCGTACGTTTTGTCTGAG GTCAAGGCTCAGGGCTTTGACGCTCCTACTGCTATCCAGTCCCAGGGCTGGCCCATGGCTCTGTCCGGACGCGAT GTCGTCGGTATTGCCGAGACTGGTTCCGGCAAGACTCTGAGTTACTGTCTCCCCGCTATTGTTCACATCAACGCT CAGCCTCTCCTCGCCCCCGGCGATGGACCCATTGTTTTGGTCTTGGCTCCTACTCGTGAGTTGGCTGTCCAGATT CAGGCTGAGATTACCAAGTTCGGAAAGTCCTCCCGTATTCGCAACACCTGTGTCTACGGTGGTGTCCCCAAGGGT CCTCAGATTCGTGACCTCTCCCGCGGTGTTGAGGTTTGCATTGCCACCCCCGGTCGCCTGATTGATATGCTCGAG GCTGGCCGTACCAACCTTCGTCGCGTCACTTACCTCGTTCTTGACGAGGCTGATCGTATGCTTGATATGGGTTTC GAACCCCAGATTCGCAAGATCATCGGCCAAATTCGCCCTGATCGTCAGACTTGCATGTGGTCCGCTACCTGGCCC AAGGATGTCCGTCAGCTCGCTTCTGATTTCCTCAACGACTACATTCAAGTCAACGTCGGCTCCACAGATCTCTCC GCCAACCACCGCATCACCCAGATTGTCGAGGTCGTCTCGGACTTTGAGAAGCGTGACAAGATGATCAAGCATCTT GAGAAGATTATGGAGGACCGCTCCAATAAGTGCATCATTTTCACAGGTACCAAGCGTGTCGCAGATGAGATTACC CGATTCCTCCGTCAGGACGGCTGGCCCGCGCTTTCCATCCACGGTGACAAGCAGCAGAACGAGCGTGACTGGGTC TTGAACGAGTTCAAGCAAGGCAAAAGCCCCATCATGGTGGCCACCGACGTGGCCTCGCGTGGTATTGGTATGAAC AAACTACACCCCTCCCCCCTCTTCCCCTCCCCCCTTCTTGTCCCCCCTTAA |
| Gene | >Pro_DTO377G3_2|g7073.t1 ATGTCGTACGGAGGTGGCTACTCTCGCGGTGGCGGCGGCGGCGGTGACTCCTACCGGTAAGTTCATTCTCATCGA GACTTTTCTTTGTCTTCTTTGTCTATCTCATCAACTGCACGGTTTTCTGGCAAAGGCCTTGATCCTGCAGTTGTT TGTTATGACGTTGGGCACTGGGATTCCTATCGTGGTCTCCCAACCAATACCAAAGAGACCTCGCATATCGCAGAA GAATTCGTCCTAACTTTGCTATTCTAGCTCTCGCGGAGGTGACAGCGGCTACTCTAACGGTGGCTCCGGTGGTGG TGGTTACAGCGGCGGCGGTGGTGGTTACGGCGGTGGCCGTGGAGGTGGTTACAGCGGTGGCGGCGGCTACGGTGG TGGTGGTGGTGGTGGTTACGGCGGCGGTGCTGCCGGTGGTGACCGCATGAACAACCTCGGCGCCGGCCTGAAGAC TCAGGACTGGGGTAAGTTGATTCCAATGACAGGCGTGTTTGTTGACGCAATACTAACTTTGGTTCCACTTAGATC CCAACACCATGCCCAAGTTTGAGAAGTCATTCTACAAGGAGCACCCCGATGTCACTGCGCGCTCGGAGGAAGACA TTATCGCCTTCCGCAAGGAGAAGGAGATGGCTATTCAGGGTACCAATGTGCCCCGTCCCGTTGAAACCTTCGACG AGGCTGGTTTCCCCGCGTACGTTTTGTCTGAGGTCAAGGCTCAGGGCTTTGACGCTCCTACTGCTATCCAGTCCC AGGGCTGGCCCATGGCTCTGTCCGGACGCGATGTCGTCGGTATTGCCGAGACTGGTTCCGGCAAGACTCTGAGTT ACTGTCTCCCCGCTATTGTTCACATCAACGCTCAGCCTCTCCTCGCCCCCGGCGATGGACCCATTGTTTTGGTCT TGGCTCCTACTCGTGAGTTGGCTGTCCAGATTCAGGCTGAGATTACCAAGTTCGGAAAGTCCTCCCGTATTCGCA ACACCTGTGTCTACGGTGGTGTCCCCAAGGGTCCTCAGATTCGTGACCTCTCCCGCGGTGTTGAGGTTTGCATTG CCACCCCCGGTCGCCTGATTGATATGCTCGAGGCTGGCCGTACCAACCTTCGTCGCGTCACTTACCTCGTTCTTG ACGAGGCTGATCGTATGCTTGATATGGGTTTCGAACCCCAGATTCGCAAGATCATCGGCCAAATTCGCCCTGATC GTCAGACTTGCATGTGGTCCGCTACCTGGCCCAAGGATGTCCGTCAGCTCGCTTCTGATTTCCTCAACGACTACA TTCAAGTCAACGTCGGCTCCACAGATCTCTCCGCCAACCACCGCATCACCCAGATTGTCGAGGTCGTCTCGGACT TTGAGAAGCGTGACAAGATGATCAAGCATCTTGAGAAGATTATGGAGGACCGCTCCAATAAGTGCATCATTTTCA CAGGTACCAAGCGTGTCGCAGATGAGATTACCCGATTCCTCCGTCAGGACGGCTGGCCCGCGCTTTGTAAGTTTT CTTTGGGTTCCCAATTGACACATGTGTACGGTGCTAACGTACATTCCAGCCATCCACGGTGACAAGCAGCAGAAC GAGCGTGACTGGGTCTTGAACGAGTTCAAGCAAGGCAAAAGCCCCATCATGGTGGCCACCGACGTGGCCTCGCGT GGTATTGGTATGAACAAACTACACCCCTCCCCCCTCTTCCCCTCCCCCCTTCTTGTCCCCCCTTAA |